Wall clock time and date at job start Tue Mar 31 2020 07:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38357 * 119.45299 * 2 1 4 4 C 1.38340 * 119.30503 * 179.97438 * 3 2 1 5 5 C 1.40077 * 118.28978 * 359.97438 * 4 3 2 6 6 C 1.47716 * 120.56952 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99996 * 176.14492 * 6 5 4 8 8 O 1.34710 * 119.99798 * 355.87033 * 6 5 4 9 9 C 1.45201 * 116.99896 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47138 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47152 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47316 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99906 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00451 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99663 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47178 * 60.00436 * 16 14 12 18 18 H 1.48504 * 109.46918 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47388 * 300.00176 * 16 14 12 20 20 C 1.39575 * 118.86692 * 0.27233 * 5 4 3 21 21 C 1.50698 * 119.72079 * 179.72329 * 20 5 4 22 22 C 1.53002 * 109.47068 * 157.02660 * 21 20 5 23 23 C 1.52999 * 109.47323 * 277.02499 * 21 20 5 24 24 N 1.31694 * 120.55712 * 359.45515 * 20 5 4 25 25 H 1.08996 * 109.47003 * 90.00300 * 1 2 3 26 26 H 1.09001 * 109.47264 * 210.00565 * 1 2 3 27 27 H 1.08998 * 109.46847 * 329.99782 * 1 2 3 28 28 H 1.07998 * 120.34748 * 359.97438 * 3 2 1 29 29 H 1.08007 * 120.85791 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46864 * 299.99423 * 9 8 6 31 31 H 1.09000 * 109.47611 * 60.00015 * 9 8 6 32 32 H 1.09005 * 109.47204 * 299.99658 * 10 9 8 33 33 H 1.09001 * 109.47542 * 59.99833 * 10 9 8 34 34 H 1.08992 * 109.47286 * 299.99877 * 11 10 9 35 35 H 1.09000 * 109.47340 * 60.00179 * 11 10 9 36 36 H 0.96996 * 119.99564 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.47147 * 37.02791 * 21 20 5 38 38 H 1.08995 * 109.47311 * 59.99702 * 22 21 20 39 39 H 1.08997 * 109.46845 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.46729 * 300.00099 * 22 21 20 41 41 H 1.09005 * 109.46852 * 60.00010 * 23 21 20 42 42 H 1.09006 * 109.46856 * 179.97438 * 23 21 20 43 43 H 1.09001 * 109.47247 * 300.00231 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2048 0.0000 4 6 3.5708 1.2012 0.0005 5 6 4.2314 -0.0340 0.0016 6 6 5.7073 -0.0966 0.0028 7 8 6.2696 -1.1709 0.0745 8 8 6.4295 1.0375 -0.0812 9 6 7.8750 0.9003 -0.0751 10 6 8.5191 2.2843 -0.1776 11 6 10.0422 2.1399 -0.1705 12 6 10.6767 3.5030 -0.2721 13 1 10.0556 4.3844 -0.3350 14 6 12.0499 3.6253 -0.2838 15 7 12.8062 2.5521 -0.2067 16 14 12.8362 5.3150 -0.4104 17 1 12.4119 6.1462 0.7447 18 1 14.3146 5.1747 -0.4034 19 1 12.4073 5.9671 -1.6736 20 6 3.4715 -1.2047 -0.0037 21 6 4.1624 -2.5439 -0.0090 22 6 3.2156 -3.6084 0.5491 23 6 4.5537 -2.9103 -1.4420 24 7 2.1557 -1.1488 0.0011 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6441 2.1382 -0.0004 29 1 4.1271 2.1269 0.0001 30 1 8.1905 0.4201 0.8512 31 1 8.1859 0.2916 -0.9241 32 1 8.2036 2.7642 -1.1041 33 1 8.2084 2.8935 0.6712 34 1 10.3574 1.6602 0.7561 35 1 10.3534 1.5306 -1.0191 36 1 13.7723 2.6381 -0.2145 37 1 5.0577 -2.4933 0.6106 38 1 2.3202 -3.6591 -0.0704 39 1 3.7155 -4.5770 0.5457 40 1 2.9368 -3.3474 1.5700 41 1 5.2283 -2.1519 -1.8395 42 1 5.0539 -3.8788 -1.4456 43 1 3.6584 -2.9609 -2.0615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835159614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:35 Heat of formation + Delta-G solvation = -94.135904 kcal Electronic energy + Delta-G solvation = -22645.995703 eV Core-core repulsion = 19268.757703 eV Total energy + Delta-G solvation = -3377.238000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.17545 -40.79962 -38.06343 -36.47204 -35.90624 -34.32723 -33.56389 -32.44163 -29.57328 -28.72928 -27.98737 -25.85219 -24.85406 -23.97327 -22.22933 -22.14577 -21.47674 -18.99232 -18.60756 -17.97446 -17.73203 -17.12573 -16.79707 -16.49161 -15.98064 -15.55588 -15.38989 -15.10371 -14.90346 -14.35475 -14.15101 -13.98067 -13.78345 -13.72202 -13.52971 -13.20272 -13.02622 -12.93918 -12.80940 -12.55619 -12.46151 -12.32720 -12.24263 -12.10045 -12.02206 -11.59457 -11.43065 -11.30245 -11.13122 -10.94513 -10.57295 -10.52246 -9.95977 -8.22260 -6.33964 -0.58757 0.13493 1.38735 1.40856 1.44375 1.49647 1.53543 2.40958 2.62069 3.03383 3.11664 3.41288 3.60129 3.69315 3.91285 3.98816 4.03687 4.14492 4.22573 4.25839 4.31200 4.39988 4.67477 4.72257 4.77721 4.78466 4.81215 4.83975 4.85204 4.93698 4.95193 5.05909 5.11673 5.13228 5.18326 5.22648 5.38792 5.45788 5.50893 5.62882 5.65380 5.79358 6.18215 6.60184 6.81821 6.82043 7.35620 8.89817 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026087 B = 0.002796 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.057728 B =10011.327576 C =10919.725029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.155 3.845 3 C -0.183 4.183 4 C -0.016 4.016 5 C -0.208 4.208 6 C 0.506 3.494 7 O -0.517 6.517 8 O -0.352 6.352 9 C 0.080 3.920 10 C -0.093 4.093 11 C 0.027 3.973 12 C -0.544 4.544 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.197 3.803 21 C -0.068 4.068 22 C -0.125 4.125 23 C -0.124 4.124 24 N -0.499 5.499 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.180 0.820 29 H 0.161 0.839 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.068 0.932 34 H -0.003 1.003 35 H -0.003 1.003 36 H 0.265 0.735 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.244 -5.549 0.126 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.018 3.982 3 C -0.203 4.203 4 C -0.042 4.042 5 C -0.212 4.212 6 C 0.352 3.648 7 O -0.408 6.408 8 O -0.269 6.269 9 C 0.007 3.993 10 C -0.131 4.131 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.084 0.916 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.190 1.190 20 C 0.059 3.941 21 C -0.087 4.087 22 C -0.182 4.182 23 C -0.181 4.181 24 N -0.209 5.209 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.198 0.802 29 H 0.179 0.821 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.352 -6.664 0.152 28.153 hybrid contribution 1.809 1.227 -0.029 2.186 sum -25.543 -5.437 0.123 26.116 Atomic orbital electron populations 1.20928 0.85531 1.05090 1.04629 1.22342 0.99176 0.87957 0.88732 1.22347 0.93594 1.00975 1.03347 1.22203 0.95617 0.97290 0.89044 1.20003 0.89524 0.96922 1.14747 1.21321 0.88869 0.82004 0.72604 1.90746 1.73287 1.30083 1.46708 1.86501 1.21967 1.35044 1.83348 1.23175 0.74327 0.99828 1.01997 1.21458 0.95434 0.93616 1.02551 1.18922 0.90276 0.96400 0.95469 1.21599 0.92160 0.93773 1.50676 0.91614 1.26013 0.98157 1.01123 0.94619 1.70095 1.05208 1.30808 1.51283 0.85447 0.76932 0.79056 0.79311 1.18995 1.20966 1.19022 1.21538 0.89274 0.94505 0.88793 1.20586 0.98802 0.89689 0.99593 1.21617 0.98975 0.97161 1.00461 1.21595 1.00722 1.01687 0.94124 1.67568 1.07761 1.30035 1.15528 0.88530 0.90275 0.87720 0.80233 0.82106 0.91713 0.91756 0.91424 0.91376 0.98484 0.98508 0.92668 0.88230 0.91584 0.91556 0.93375 0.94586 0.90776 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.16 71.24 0.72 -0.15 16 2 C 0.16 2.55 6.78 42.57 0.29 2.84 16 3 C -0.18 -2.70 9.72 22.32 0.22 -2.48 16 4 C -0.02 -0.33 9.74 22.74 0.22 -0.11 16 5 C -0.21 -5.53 5.89 -20.00 -0.12 -5.65 16 6 C 0.51 16.20 7.69 70.33 0.54 16.74 16 7 O -0.52 -18.33 11.89 19.93 0.24 -18.09 16 8 O -0.35 -11.71 9.56 -56.20 -0.54 -12.25 16 9 C 0.08 2.97 5.48 71.98 0.39 3.37 16 10 C -0.09 -3.82 5.53 30.59 0.17 -3.65 16 11 C 0.03 1.39 4.97 29.85 0.15 1.54 16 12 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 13 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 16 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 C 0.20 5.02 5.85 42.90 0.25 5.27 16 21 C -0.07 -1.70 2.37 -11.54 -0.03 -1.73 16 22 C -0.12 -2.54 8.64 71.98 0.62 -1.92 16 23 C -0.12 -2.95 8.80 71.98 0.63 -2.32 16 24 N -0.50 -11.03 9.00 -171.01 -1.54 -12.57 16 25 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.37 8.07 -2.39 -0.02 0.35 16 28 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.16 2.89 7.71 -2.91 -0.02 2.87 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 32 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 33 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.10 2.92 5.58 -2.39 -0.01 2.91 16 38 H 0.07 1.30 7.79 -2.39 -0.02 1.28 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.03 0.99 7.05 -2.38 -0.02 0.97 16 42 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -68.19 358.79 6.21 -61.98 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.98 Total: 9.96 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.76 Total: -18.29 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -1.25 Total: -69.16 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.30 Total: -30.34 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.19 6.21 -61.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835159614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.156 kcal (2) G-P(sol) polarization free energy of solvation -68.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds