Wall clock time and date at job start Tue Mar 31 2020 06:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38169 * 119.97255 * 2 1 4 4 C 1.38714 * 119.94280 * 180.02562 * 3 2 1 5 5 O 1.35904 * 120.04956 * 180.02562 * 4 3 2 6 6 C 1.38749 * 119.89108 * 0.02562 * 4 3 2 7 7 C 1.50696 * 120.02903 * 180.02562 * 6 4 3 8 8 N 1.46902 * 109.47438 * 75.20259 * 7 6 4 9 9 C 1.48561 * 110.99858 * 75.57111 * 8 7 6 10 10 C 1.54376 * 104.59136 * 159.04190 * 9 8 7 11 11 C 1.54259 * 105.06314 * 336.14630 * 10 9 8 12 12 O 1.42898 * 110.32484 * 119.00000 * 11 10 9 13 13 C 1.50703 * 110.31987 * 241.10515 * 11 10 9 14 14 H 1.07998 * 119.99741 * 118.55061 * 13 11 10 15 15 C 1.37879 * 120.00048 * 298.54078 * 13 11 10 16 16 N 1.31508 * 119.99981 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99600 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47598 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46905 * 120.00440 * 17 15 13 20 20 H 1.48509 * 109.46949 * 240.00048 * 17 15 13 21 21 C 1.48559 * 111.00108 * 190.99145 * 8 7 6 22 22 C 1.38125 * 119.94165 * 0.27075 * 6 4 3 23 23 C 1.38245 * 119.97612 * 180.02562 * 2 1 3 24 24 C 1.50703 * 119.93810 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.47311 * 89.99683 * 1 2 3 26 26 H 1.08998 * 109.46855 * 210.00226 * 1 2 3 27 27 H 1.09000 * 109.46660 * 329.99737 * 1 2 3 28 28 H 1.08004 * 120.02983 * 0.02562 * 3 2 1 29 29 H 0.96699 * 114.00597 * 275.00723 * 5 4 3 30 30 H 1.09002 * 109.46676 * 315.20242 * 7 6 4 31 31 H 1.08998 * 109.47256 * 195.20332 * 7 6 4 32 32 H 1.08998 * 110.41086 * 40.26451 * 9 8 7 33 33 H 1.09001 * 110.40700 * 277.81735 * 9 8 7 34 34 H 1.09000 * 110.32235 * 95.04360 * 10 9 8 35 35 H 1.09005 * 110.31944 * 217.14537 * 10 9 8 36 36 H 0.96706 * 114.00401 * 61.45292 * 12 11 10 37 37 H 0.97002 * 119.99601 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.41551 * 82.17502 * 21 8 7 39 39 H 1.09007 * 110.50921 * 319.78930 * 21 8 7 40 40 H 1.07999 * 119.96986 * 179.72845 * 22 6 4 41 41 H 1.09000 * 109.47023 * 90.00577 * 24 23 2 42 42 H 1.09002 * 109.47239 * 210.00274 * 24 23 2 43 43 H 1.08996 * 109.47286 * 330.00694 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2655 2.3722 0.0000 6 6 4.2752 -0.0071 -0.0016 7 6 5.7822 -0.0115 -0.0016 8 7 6.2729 0.3396 1.3377 9 6 6.1213 -0.8018 2.2764 10 6 7.1229 -0.5062 3.4133 11 6 8.1844 0.4182 2.7821 12 8 8.2114 1.6770 3.4579 13 6 9.5427 -0.2324 2.8347 14 1 10.0717 -0.4526 1.9193 15 6 10.1101 -0.5464 4.0515 16 7 9.4657 -0.2786 5.1661 17 14 11.7941 -1.3522 4.1165 18 1 12.3040 -1.5457 2.7354 19 1 12.7304 -0.4817 4.8720 20 1 11.6868 -2.6693 4.7942 21 6 7.7348 0.6033 1.3169 22 6 3.5805 -1.2009 -0.0078 23 6 2.1977 -1.1975 -0.0005 24 6 1.4422 -2.5015 -0.0017 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.6573 2.1323 0.0004 29 1 4.3956 2.7519 -0.8798 30 1 6.1476 0.7173 -0.7251 31 1 6.1426 -1.0040 -0.2720 32 1 6.3752 -1.7385 1.7801 33 1 5.1041 -0.8406 2.6664 34 1 6.6212 0.0010 4.2375 35 1 7.5830 -1.4306 3.7624 36 1 8.4448 1.6158 4.3944 37 1 9.8651 -0.4991 6.0222 38 1 7.9327 1.6223 0.9843 39 1 8.2427 -0.1122 0.6701 40 1 4.1178 -2.1377 -0.0131 41 1 1.2606 -2.8153 -1.0297 42 1 2.0299 -3.2624 0.5119 43 1 0.4898 -2.3701 0.5117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843425799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:07 Heat of formation + Delta-G solvation = -69.743356 kcal Electronic energy + Delta-G solvation = -23711.962980 eV Core-core repulsion = 20335.782721 eV Total energy + Delta-G solvation = -3376.180259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.05922 -38.12099 -36.97724 -34.98057 -32.90231 -32.06031 -31.70398 -29.96128 -27.96616 -27.48376 -26.31809 -24.68286 -23.39172 -22.17970 -20.64304 -19.80026 -19.31620 -17.65305 -16.92565 -16.31796 -15.45077 -15.21554 -14.88251 -14.82843 -14.27118 -14.13548 -13.69026 -13.54173 -13.39784 -13.03727 -12.91024 -12.79810 -12.45437 -12.23628 -11.95409 -11.53333 -11.46913 -11.34609 -11.23872 -11.22380 -10.98189 -10.71595 -10.47840 -10.41526 -10.29577 -10.15615 -9.76253 -9.05435 -8.65551 -8.54269 -8.18942 -8.00427 -7.65948 -6.15977 -4.24804 1.33718 1.39568 3.23018 3.31676 3.35580 3.62916 4.32714 4.36855 4.72634 4.75891 4.91108 5.00713 5.10977 5.12311 5.18918 5.37968 5.43919 5.55190 5.61676 5.70411 5.72187 5.75332 5.82668 5.89838 6.05584 6.10858 6.11481 6.20615 6.27394 6.40602 6.52166 6.61774 6.69119 6.73120 6.94859 7.04565 7.13286 7.45456 7.58795 7.62824 7.77923 7.86564 7.92050 8.27710 8.78527 9.44040 9.64977 10.90548 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.003741 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.896128 B = 7483.249302 C = 7874.980622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.151 4.151 4 C 0.129 3.871 5 O -0.480 6.480 6 C -0.091 4.091 7 C 0.089 3.911 8 N -0.494 5.494 9 C 0.034 3.966 10 C -0.118 4.118 11 C 0.254 3.746 12 O -0.584 6.584 13 C -0.536 4.536 14 H 0.059 0.941 15 C 0.069 3.931 16 N -0.893 5.893 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.052 3.948 22 C -0.096 4.096 23 C -0.101 4.101 24 C -0.113 4.113 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.380 0.620 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.378 0.622 37 H 0.266 0.734 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.122 0.878 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 -2.002 -11.483 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.169 4.169 4 C 0.084 3.916 5 O -0.288 6.288 6 C -0.092 4.092 7 C -0.040 4.040 8 N -0.217 5.217 9 C -0.094 4.094 10 C -0.157 4.157 11 C 0.213 3.787 12 O -0.393 6.393 13 C -0.575 4.575 14 H 0.078 0.922 15 C -0.133 4.133 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.075 4.075 22 C -0.115 4.115 23 C -0.101 4.101 24 C -0.170 4.170 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.235 0.765 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.227 0.773 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.140 0.860 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.016 -1.409 -11.110 19.543 hybrid contribution 1.563 -1.319 -0.051 2.046 sum -14.453 -2.727 -11.161 18.463 Atomic orbital electron populations 1.20830 0.91382 1.02798 1.02068 1.19525 0.95725 0.92179 1.00561 1.21272 0.93543 0.98038 1.04063 1.18218 0.89145 0.85310 0.98959 1.84993 1.76506 1.34788 1.32543 1.20151 0.96143 0.92381 1.00574 1.21006 0.90191 0.99343 0.93434 1.65439 1.15920 1.35037 1.05328 1.23151 0.99692 0.91312 0.95214 1.22832 0.95615 1.01591 0.95685 1.19198 0.91869 0.81298 0.86289 1.86147 1.92828 1.32309 1.27980 1.21770 1.03076 1.39779 0.92872 0.92232 1.25005 0.97785 0.94951 0.95558 1.69728 1.37984 1.47998 0.97593 0.86451 0.83891 0.78943 0.78165 1.19757 1.20814 1.20942 1.23056 0.85684 1.00187 0.98614 1.20828 0.93235 0.97329 1.00105 1.19666 0.93525 0.94811 1.02138 1.20812 0.99996 0.94186 1.01999 0.91366 0.91179 0.91724 0.85800 0.76515 0.90626 0.94431 0.95180 0.92120 0.92821 0.91224 0.77263 0.92431 0.90964 0.93973 0.86039 0.91478 0.91661 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.60 36.00 0.35 -0.64 16 2 C -0.08 -0.94 5.88 -104.65 -0.62 -1.56 16 3 C -0.15 -1.95 9.64 -39.43 -0.38 -2.33 16 4 C 0.13 1.92 6.68 -39.22 -0.26 1.66 16 5 O -0.48 -7.13 12.83 -19.44 -0.25 -7.38 16 6 C -0.09 -1.40 5.09 -104.48 -0.53 -1.93 16 7 C 0.09 1.48 4.59 -4.98 -0.02 1.46 16 8 N -0.49 -10.20 5.32 -231.41 -1.23 -11.43 16 9 C 0.03 0.72 6.15 -2.18 -0.01 0.70 16 10 C -0.12 -2.90 5.55 -25.35 -0.14 -3.04 16 11 C 0.25 6.58 1.05 -90.39 -0.10 6.48 16 12 O -0.58 -16.18 12.94 -35.23 -0.46 -16.64 16 13 C -0.54 -14.69 8.08 -34.44 -0.28 -14.97 16 14 H 0.06 1.62 7.58 -52.49 -0.40 1.22 16 15 C 0.07 1.86 5.02 -17.82 -0.09 1.77 16 16 N -0.89 -24.41 10.81 55.43 0.60 -23.81 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.05 1.18 5.72 -2.18 -0.01 1.17 16 22 C -0.10 -1.32 9.32 -39.61 -0.37 -1.69 16 23 C -0.10 -1.23 5.88 -104.60 -0.62 -1.84 16 24 C -0.11 -1.03 9.60 36.01 0.35 -0.69 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.54 5.94 -51.93 -0.31 0.23 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.38 3.61 9.06 45.56 0.41 4.02 16 30 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 31 H 0.04 0.60 7.55 -51.93 -0.39 0.21 16 32 H 0.03 0.60 7.74 -51.93 -0.40 0.19 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.37 7.98 -51.93 -0.41 0.95 16 35 H 0.07 1.80 7.24 -51.93 -0.38 1.42 16 36 H 0.38 10.51 7.32 45.56 0.33 10.84 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.07 1.67 8.08 -51.93 -0.42 1.25 16 39 H 0.04 0.92 7.56 -51.93 -0.39 0.53 16 40 H 0.12 1.53 8.00 -52.49 -0.42 1.11 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 43 H 0.07 0.54 5.94 -51.93 -0.31 0.24 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -30.98 345.50 -9.05 -40.03 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -5.16 Total: 13.57 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.73 Total: -15.44 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.63 Total: -35.24 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.71 Total: -24.01 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.98 -9.05 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.714 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds