Wall clock time and date at job start Tue Mar 31 2020 06:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38169 * 119.97255 * 2 1 4 4 C 1.38714 * 119.94280 * 180.02562 * 3 2 1 5 5 O 1.35904 * 120.04956 * 180.02562 * 4 3 2 6 6 C 1.38749 * 119.89108 * 0.02562 * 4 3 2 7 7 C 1.50696 * 120.02903 * 180.02562 * 6 4 3 8 8 N 1.46902 * 109.47438 * 75.20259 * 7 6 4 9 9 C 1.48561 * 110.99858 * 75.57111 * 8 7 6 10 10 C 1.54376 * 104.59136 * 159.04190 * 9 8 7 11 11 C 1.54259 * 105.06314 * 336.14630 * 10 9 8 12 12 O 1.42898 * 110.32484 * 119.00000 * 11 10 9 13 13 C 1.50703 * 110.31987 * 241.10515 * 11 10 9 14 14 H 1.07998 * 119.99741 * 118.55061 * 13 11 10 15 15 C 1.37879 * 120.00048 * 298.54078 * 13 11 10 16 16 N 1.31508 * 119.99981 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99600 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47598 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46905 * 120.00440 * 17 15 13 20 20 H 1.48509 * 109.46949 * 240.00048 * 17 15 13 21 21 C 1.48559 * 111.00108 * 190.99145 * 8 7 6 22 22 C 1.38125 * 119.94165 * 0.27075 * 6 4 3 23 23 C 1.38245 * 119.97612 * 180.02562 * 2 1 3 24 24 C 1.50703 * 119.93810 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.47311 * 89.99683 * 1 2 3 26 26 H 1.08998 * 109.46855 * 210.00226 * 1 2 3 27 27 H 1.09000 * 109.46660 * 329.99737 * 1 2 3 28 28 H 1.08004 * 120.02983 * 0.02562 * 3 2 1 29 29 H 0.96699 * 114.00597 * 275.00723 * 5 4 3 30 30 H 1.09002 * 109.46676 * 315.20242 * 7 6 4 31 31 H 1.08998 * 109.47256 * 195.20332 * 7 6 4 32 32 H 1.08998 * 110.41086 * 40.26451 * 9 8 7 33 33 H 1.09001 * 110.40700 * 277.81735 * 9 8 7 34 34 H 1.09000 * 110.32235 * 95.04360 * 10 9 8 35 35 H 1.09005 * 110.31944 * 217.14537 * 10 9 8 36 36 H 0.96706 * 114.00401 * 61.45292 * 12 11 10 37 37 H 0.97002 * 119.99601 * 180.02562 * 16 15 13 38 38 H 1.09001 * 110.41551 * 82.17502 * 21 8 7 39 39 H 1.09007 * 110.50921 * 319.78930 * 21 8 7 40 40 H 1.07999 * 119.96986 * 179.72845 * 22 6 4 41 41 H 1.09000 * 109.47023 * 90.00577 * 24 23 2 42 42 H 1.09002 * 109.47239 * 210.00274 * 24 23 2 43 43 H 1.08996 * 109.47286 * 330.00694 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2655 2.3722 0.0000 6 6 4.2752 -0.0071 -0.0016 7 6 5.7822 -0.0115 -0.0016 8 7 6.2729 0.3396 1.3377 9 6 6.1213 -0.8018 2.2764 10 6 7.1229 -0.5062 3.4133 11 6 8.1844 0.4182 2.7821 12 8 8.2114 1.6770 3.4579 13 6 9.5427 -0.2324 2.8347 14 1 10.0717 -0.4526 1.9193 15 6 10.1101 -0.5464 4.0515 16 7 9.4657 -0.2786 5.1661 17 14 11.7941 -1.3522 4.1165 18 1 12.3040 -1.5457 2.7354 19 1 12.7304 -0.4817 4.8720 20 1 11.6868 -2.6693 4.7942 21 6 7.7348 0.6033 1.3169 22 6 3.5805 -1.2009 -0.0078 23 6 2.1977 -1.1975 -0.0005 24 6 1.4422 -2.5015 -0.0017 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.6573 2.1323 0.0004 29 1 4.3956 2.7519 -0.8798 30 1 6.1476 0.7173 -0.7251 31 1 6.1426 -1.0040 -0.2720 32 1 6.3752 -1.7385 1.7801 33 1 5.1041 -0.8406 2.6664 34 1 6.6212 0.0010 4.2375 35 1 7.5830 -1.4306 3.7624 36 1 8.4448 1.6158 4.3944 37 1 9.8651 -0.4991 6.0222 38 1 7.9327 1.6223 0.9843 39 1 8.2427 -0.1122 0.6701 40 1 4.1178 -2.1377 -0.0131 41 1 1.2606 -2.8153 -1.0297 42 1 2.0299 -3.2624 0.5119 43 1 0.4898 -2.3701 0.5117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843425799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:06 Heat of formation + Delta-G solvation = -92.572162 kcal Electronic energy + Delta-G solvation = -23712.952911 eV Core-core repulsion = 20335.782721 eV Total energy + Delta-G solvation = -3377.170191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.12424 -39.85244 -37.99259 -36.77118 -34.17865 -34.14392 -32.58399 -31.48103 -29.75901 -28.76204 -27.37074 -26.34595 -24.79843 -23.15305 -22.18264 -21.32074 -20.98080 -19.03259 -18.64925 -17.44928 -17.00208 -16.91022 -16.37400 -16.06230 -15.81717 -15.32447 -14.99255 -14.95156 -14.57655 -14.48503 -14.10859 -13.90858 -13.72796 -13.54410 -13.26673 -13.04304 -12.92233 -12.91735 -12.55568 -12.44998 -12.39876 -12.30298 -12.23278 -12.07333 -11.90056 -11.69217 -11.25741 -11.02807 -10.61234 -10.12457 -9.64200 -9.29729 -9.13782 -8.21497 -6.38692 0.34411 0.40232 1.38712 1.41671 1.52567 2.37569 2.62798 3.03189 3.28844 3.42019 3.77042 3.89240 3.98688 4.02943 4.11834 4.13513 4.30580 4.36433 4.45996 4.53196 4.57794 4.70250 4.72538 4.76031 4.81340 4.87807 4.91725 5.01838 5.04774 5.12894 5.18931 5.23576 5.36257 5.41323 5.46654 5.57075 5.60189 5.71686 5.75144 5.85966 6.03859 6.20466 6.28233 6.68785 7.00253 7.33293 7.47657 8.84086 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027774 B = 0.003741 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.896128 B = 7483.249302 C = 7874.980622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.079 4.079 3 C -0.159 4.159 4 C 0.112 3.888 5 O -0.502 6.502 6 C -0.115 4.115 7 C 0.092 3.908 8 N -0.503 5.503 9 C 0.047 3.953 10 C -0.109 4.109 11 C 0.236 3.764 12 O -0.596 6.596 13 C -0.561 4.561 14 H 0.055 0.945 15 C 0.027 3.973 16 N -0.912 5.912 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.277 1.277 21 C 0.061 3.939 22 C -0.104 4.104 23 C -0.107 4.107 24 C -0.112 4.112 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.399 0.601 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.050 0.950 36 H 0.372 0.628 37 H 0.269 0.731 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.986 -3.145 -12.532 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.079 4.079 3 C -0.178 4.178 4 C 0.067 3.933 5 O -0.314 6.314 6 C -0.116 4.116 7 C -0.036 4.036 8 N -0.226 5.226 9 C -0.080 4.080 10 C -0.148 4.148 11 C 0.196 3.804 12 O -0.404 6.404 13 C -0.599 4.599 14 H 0.074 0.926 15 C -0.173 4.173 16 N -0.552 5.552 17 Si 0.788 3.212 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.202 1.202 21 C -0.067 4.067 22 C -0.123 4.123 23 C -0.107 4.107 24 C -0.168 4.168 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.155 0.845 29 H 0.256 0.744 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.221 0.779 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.146 0.854 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.434 -2.548 -12.187 21.423 hybrid contribution 1.925 -0.929 0.257 2.153 sum -15.509 -3.477 -11.929 19.872 Atomic orbital electron populations 1.20906 0.88869 1.03746 1.03422 1.19959 0.97586 0.91608 0.98757 1.21486 0.92928 0.99298 1.04039 1.18438 0.90027 0.85098 0.99700 1.84925 1.76790 1.35087 1.34553 1.20088 0.95115 0.93378 1.03040 1.21017 0.91517 0.99853 0.91192 1.65385 1.14230 1.35327 1.07702 1.22987 0.98853 0.92037 0.94162 1.22621 0.95924 1.00031 0.96254 1.19502 0.92083 0.80809 0.87969 1.86142 1.92880 1.33733 1.27672 1.21996 1.04061 1.40771 0.93105 0.92644 1.25734 1.01166 0.95264 0.95137 1.69819 1.39241 1.48125 0.97978 0.85452 0.79522 0.78097 0.78179 1.19415 1.20522 1.20235 1.22874 0.87336 0.99899 0.96566 1.20998 0.94197 0.96991 1.00108 1.20040 0.93165 0.96383 1.01076 1.20873 1.00208 0.92510 1.03235 0.89664 0.89913 0.91144 0.84468 0.74357 0.89976 0.93620 0.93848 0.91406 0.94803 0.93168 0.77928 0.92173 0.91787 0.93361 0.85400 0.89919 0.91550 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.60 71.23 0.68 -0.88 16 2 C -0.08 -1.67 5.88 -19.88 -0.12 -1.79 16 3 C -0.16 -3.88 9.64 22.37 0.22 -3.67 16 4 C 0.11 3.27 6.68 22.51 0.15 3.42 16 5 O -0.50 -14.80 12.83 -92.47 -1.19 -15.99 16 6 C -0.12 -3.44 5.09 -19.77 -0.10 -3.54 16 7 C 0.09 3.01 4.59 85.56 0.39 3.40 16 8 N -0.50 -20.70 5.32 -886.05 -4.71 -25.42 16 9 C 0.05 1.98 6.15 86.45 0.53 2.51 16 10 C -0.11 -5.47 5.55 31.49 0.17 -5.30 16 11 C 0.24 12.49 1.05 -10.65 -0.01 12.47 16 12 O -0.60 -33.97 12.94 -148.98 -1.93 -35.90 16 13 C -0.56 -31.11 8.08 25.60 0.21 -30.90 16 14 H 0.06 3.04 7.58 -2.91 -0.02 3.02 16 15 C 0.03 1.48 5.02 84.66 0.43 1.91 16 16 N -0.91 -50.47 10.81 21.45 0.23 -50.24 16 17 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 C 0.06 2.80 5.72 86.45 0.49 3.29 16 22 C -0.10 -2.70 9.32 22.25 0.21 -2.49 16 23 C -0.11 -2.34 5.88 -19.85 -0.12 -2.46 16 24 C -0.11 -1.69 9.60 71.24 0.68 -1.01 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.95 5.94 -2.39 -0.01 0.94 16 27 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 28 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.40 7.49 9.06 -74.06 -0.67 6.82 16 30 H 0.08 2.53 7.93 -2.39 -0.02 2.51 16 31 H 0.05 1.41 7.55 -2.39 -0.02 1.39 16 32 H 0.04 1.68 7.74 -2.39 -0.02 1.66 16 33 H 0.07 2.72 8.14 -2.39 -0.02 2.71 16 34 H 0.03 1.77 7.98 -2.39 -0.02 1.75 16 35 H 0.05 2.65 7.24 -2.38 -0.02 2.63 16 36 H 0.37 21.45 7.32 -74.05 -0.54 20.91 16 37 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 38 H 0.06 3.00 8.08 -2.39 -0.02 2.98 16 39 H 0.05 2.12 7.56 -2.38 -0.02 2.10 16 40 H 0.13 3.03 8.00 -2.91 -0.02 3.00 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 43 H 0.08 1.02 5.94 -2.39 -0.01 1.00 16 Total: -1.00 -66.31 345.50 -1.94 -68.25 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: -0.19 Total: 39.43 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 3.82 Total: -25.03 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -4.48 Total: -75.66 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -3.11 Total: -51.88 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -66.31 -1.94 -68.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.325 kcal (2) G-P(sol) polarization free energy of solvation -66.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds