Wall clock time and date at job start Tue Mar 31 2020 06:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38165 * 119.97252 * 2 1 4 4 C 1.38712 * 119.94706 * 179.97438 * 3 2 1 5 5 O 1.35894 * 120.05937 * 180.02562 * 4 3 2 6 6 C 1.38756 * 119.88621 * 0.02562 * 4 3 2 7 7 C 1.50704 * 120.02844 * 180.02562 * 6 4 3 8 8 N 1.46896 * 109.47133 * 75.22544 * 7 6 4 9 9 C 1.48717 * 111.01337 * 79.93640 * 8 7 6 10 10 C 1.54384 * 104.51267 * 158.96809 * 9 8 7 11 11 C 1.54255 * 105.15249 * 336.26503 * 10 9 8 12 12 O 1.42898 * 110.32564 * 241.05836 * 11 10 9 13 13 C 1.50703 * 110.32424 * 118.84352 * 11 10 9 14 14 H 1.07992 * 120.00317 * 241.46017 * 13 11 10 15 15 C 1.37881 * 119.99549 * 61.45849 * 13 11 10 16 16 N 1.31516 * 120.00110 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99818 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47206 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47096 * 119.99961 * 17 15 13 20 20 H 1.48503 * 109.47083 * 239.99934 * 17 15 13 21 21 C 1.48556 * 110.99755 * 195.44570 * 8 7 6 22 22 C 1.38119 * 119.94514 * 0.27798 * 6 4 3 23 23 C 1.38239 * 119.97324 * 179.97438 * 2 1 3 24 24 C 1.50700 * 119.94524 * 0.02562 * 23 2 1 25 25 H 1.08991 * 109.47329 * 89.99570 * 1 2 3 26 26 H 1.08996 * 109.46830 * 209.99877 * 1 2 3 27 27 H 1.09001 * 109.46764 * 329.99633 * 1 2 3 28 28 H 1.08003 * 120.03013 * 0.02904 * 3 2 1 29 29 H 0.96696 * 114.00334 * 275.03437 * 5 4 3 30 30 H 1.09007 * 109.46960 * 315.22418 * 7 6 4 31 31 H 1.08998 * 109.46808 * 195.23220 * 7 6 4 32 32 H 1.08992 * 110.39036 * 40.24540 * 9 8 7 33 33 H 1.08996 * 110.50713 * 277.74752 * 9 8 7 34 34 H 1.09001 * 110.31830 * 217.31957 * 10 9 8 35 35 H 1.08999 * 110.32242 * 95.21869 * 10 9 8 36 36 H 0.96708 * 113.99640 * 298.54191 * 12 11 10 37 37 H 0.96998 * 120.00245 * 180.02562 * 16 15 13 38 38 H 1.09003 * 110.41457 * 82.18304 * 21 8 7 39 39 H 1.09000 * 110.41417 * 319.73615 * 21 8 7 40 40 H 1.07996 * 119.97690 * 179.72270 * 22 6 4 41 41 H 1.08998 * 109.46889 * 90.00372 * 24 23 2 42 42 H 1.08999 * 109.47717 * 210.00390 * 24 23 2 43 43 H 1.09002 * 109.46867 * 330.00600 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1963 0.0005 5 8 4.2656 2.3721 0.0011 6 6 4.2752 -0.0071 0.0005 7 6 5.7822 -0.0115 0.0017 8 7 6.2719 0.3397 1.3414 9 6 6.2168 -0.8335 2.2538 10 6 7.2181 -0.4956 3.3793 11 6 8.1997 0.5174 2.7550 12 8 9.5287 -0.0074 2.7666 13 6 8.1458 1.8260 3.5004 14 1 7.8431 2.7273 2.9881 15 6 8.4830 1.8726 4.8365 16 7 8.8510 0.7750 5.4605 17 14 8.4155 3.4945 5.7608 18 1 7.9738 4.5716 4.8389 19 1 7.4553 3.3824 6.8880 20 1 9.7645 3.8191 6.2901 21 6 7.7108 0.7070 1.3029 22 6 3.5806 -1.2009 -0.0058 23 6 2.1976 -1.1975 0.0005 24 6 1.4423 -2.5015 0.0005 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6573 2.1322 0.0005 29 1 4.3960 2.7515 -0.8787 30 1 6.1482 0.7173 -0.7216 31 1 6.1428 -1.0040 -0.2685 32 1 6.5255 -1.7375 1.7290 33 1 5.2130 -0.9534 2.6613 34 1 7.7500 -1.3932 3.6946 35 1 6.6986 -0.0470 4.2260 36 1 9.8721 -0.1891 3.6523 37 1 9.0879 0.8077 6.4006 38 1 7.8299 1.7456 0.9943 39 1 8.2544 0.0445 0.6292 40 1 4.1178 -2.1377 -0.0103 41 1 1.2606 -2.8161 -1.0271 42 1 2.0299 -3.2619 0.5148 43 1 0.4898 -2.3696 0.5139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843425800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:10 Heat of formation + Delta-G solvation = -68.166066 kcal Electronic energy + Delta-G solvation = -23808.090384 eV Core-core repulsion = 20431.978521 eV Total energy + Delta-G solvation = -3376.111863 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03591 -38.13420 -36.95472 -35.01937 -32.92729 -32.01414 -31.68818 -29.94871 -27.99424 -27.41215 -26.27522 -24.63745 -23.42463 -22.16463 -20.63061 -19.80769 -19.32945 -17.62551 -16.93824 -16.27775 -15.54185 -15.11356 -14.86048 -14.73236 -14.21569 -14.13468 -13.78477 -13.55155 -13.45282 -13.02489 -12.90353 -12.73440 -12.33866 -12.19730 -11.93524 -11.65495 -11.55169 -11.33864 -11.24747 -11.09345 -10.94357 -10.74663 -10.44812 -10.34949 -10.24593 -10.14417 -9.81877 -8.95578 -8.63311 -8.48698 -8.16396 -8.03290 -7.68285 -6.08034 -4.12477 1.35745 1.41435 3.31198 3.39092 3.45734 3.64406 4.38817 4.43590 4.68632 4.77357 4.90079 5.00453 5.11177 5.17605 5.24085 5.39255 5.44832 5.56092 5.59697 5.71448 5.72172 5.75896 5.81023 5.90560 6.04263 6.11725 6.19557 6.22616 6.27222 6.39198 6.46975 6.60150 6.63531 6.70976 6.95727 6.96818 7.16037 7.31848 7.65250 7.76553 7.80569 7.93750 7.96369 8.31502 8.90653 9.50748 9.59391 10.99697 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.004233 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.851347 B = 6612.557857 C = 7017.639664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C -0.151 4.151 4 C 0.131 3.869 5 O -0.479 6.479 6 C -0.091 4.091 7 C 0.089 3.911 8 N -0.484 5.484 9 C 0.034 3.966 10 C -0.119 4.119 11 C 0.249 3.751 12 O -0.596 6.596 13 C -0.513 4.513 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.902 5.902 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.055 3.945 22 C -0.096 4.096 23 C -0.102 4.102 24 C -0.113 4.113 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.380 0.620 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.382 0.618 37 H 0.264 0.736 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.121 0.879 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 -4.339 -12.366 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.169 4.169 4 C 0.086 3.914 5 O -0.287 6.287 6 C -0.092 4.092 7 C -0.039 4.039 8 N -0.209 5.209 9 C -0.094 4.094 10 C -0.158 4.158 11 C 0.209 3.791 12 O -0.404 6.404 13 C -0.552 4.552 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.543 5.543 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.073 4.073 22 C -0.115 4.115 23 C -0.102 4.102 24 C -0.170 4.170 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.235 0.765 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.232 0.768 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.139 0.861 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.454 -3.972 -12.045 19.230 hybrid contribution 0.487 0.227 0.497 0.732 sum -13.968 -3.745 -11.548 18.506 Atomic orbital electron populations 1.20828 0.91402 1.02803 1.02046 1.19519 0.95714 0.92185 1.00538 1.21276 0.93570 0.98044 1.04020 1.18213 0.89140 0.85315 0.98765 1.85005 1.76472 1.34777 1.32476 1.20136 0.96075 0.92391 1.00607 1.21011 0.90357 0.99289 0.93262 1.65350 1.17954 1.31316 1.06230 1.23204 1.00031 0.90800 0.95368 1.22838 0.97014 0.98974 0.96995 1.19256 0.79671 0.91093 0.89059 1.86082 1.32643 1.86657 1.35064 1.21694 1.44136 0.94594 0.94733 0.91879 1.25000 0.94504 0.96705 0.97416 1.69711 1.46696 1.26881 1.11040 0.86431 0.77452 0.83874 0.79609 1.19643 1.21046 1.21082 1.22982 0.86176 0.99926 0.98178 1.20808 0.93226 0.97269 1.00207 1.19657 0.93518 0.94791 1.02232 1.20807 1.00002 0.94188 1.01962 0.91383 0.91194 0.91716 0.85794 0.76546 0.90611 0.94478 0.95611 0.91844 0.93226 0.90723 0.76799 0.92647 0.90473 0.95398 0.86118 0.91508 0.91704 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.60 36.00 0.35 -0.66 16 2 C -0.08 -0.95 5.88 -104.65 -0.62 -1.57 16 3 C -0.15 -1.99 9.64 -39.43 -0.38 -2.37 16 4 C 0.13 1.98 6.68 -39.22 -0.26 1.72 16 5 O -0.48 -7.27 12.83 -19.41 -0.25 -7.52 16 6 C -0.09 -1.40 5.23 -104.47 -0.55 -1.95 16 7 C 0.09 1.48 4.62 -4.98 -0.02 1.46 16 8 N -0.48 -10.04 5.29 -231.27 -1.22 -11.26 16 9 C 0.03 0.71 6.28 -2.09 -0.01 0.69 16 10 C -0.12 -2.92 5.55 -25.35 -0.14 -3.06 16 11 C 0.25 6.45 1.05 -90.39 -0.10 6.36 16 12 O -0.60 -15.97 12.94 -35.23 -0.46 -16.43 16 13 C -0.51 -14.43 8.10 -34.44 -0.28 -14.71 16 14 H 0.06 1.81 7.53 -52.49 -0.40 1.41 16 15 C 0.06 1.78 5.02 -17.82 -0.09 1.69 16 16 N -0.90 -24.99 10.82 55.43 0.60 -24.39 16 17 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.05 1.25 5.69 -2.18 -0.01 1.23 16 22 C -0.10 -1.32 9.32 -39.60 -0.37 -1.69 16 23 C -0.10 -1.24 5.88 -104.60 -0.62 -1.86 16 24 C -0.11 -1.03 9.60 36.01 0.35 -0.69 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16 27 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 29 H 0.38 3.71 9.06 45.56 0.41 4.12 16 30 H 0.08 1.18 7.87 -51.92 -0.41 0.77 16 31 H 0.04 0.58 7.46 -51.93 -0.39 0.20 16 32 H 0.03 0.50 7.68 -51.93 -0.40 0.10 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.05 1.21 7.98 -51.93 -0.41 0.79 16 35 H 0.07 2.01 7.23 -51.93 -0.38 1.63 16 36 H 0.38 10.33 7.33 45.56 0.33 10.66 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.08 1.78 7.67 -51.93 -0.40 1.38 16 39 H 0.03 0.61 7.94 -51.93 -0.41 0.20 16 40 H 0.12 1.50 8.00 -52.49 -0.42 1.08 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.07 0.55 5.94 -51.93 -0.31 0.24 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -31.28 345.48 -9.04 -40.32 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.15 Total: 12.77 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -2.75 Total: -15.41 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.62 Total: -35.65 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.70 Total: -23.94 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.28 -9.04 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.848 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds