Wall clock time and date at job start Tue Mar 31 2020 06:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38165 * 119.97252 * 2 1 4 4 C 1.38712 * 119.94706 * 179.97438 * 3 2 1 5 5 O 1.35894 * 120.05937 * 180.02562 * 4 3 2 6 6 C 1.38756 * 119.88621 * 0.02562 * 4 3 2 7 7 C 1.50704 * 120.02844 * 180.02562 * 6 4 3 8 8 N 1.46896 * 109.47133 * 75.22544 * 7 6 4 9 9 C 1.48717 * 111.01337 * 79.93640 * 8 7 6 10 10 C 1.54384 * 104.51267 * 158.96809 * 9 8 7 11 11 C 1.54255 * 105.15249 * 336.26503 * 10 9 8 12 12 O 1.42898 * 110.32564 * 241.05836 * 11 10 9 13 13 C 1.50703 * 110.32424 * 118.84352 * 11 10 9 14 14 H 1.07992 * 120.00317 * 241.46017 * 13 11 10 15 15 C 1.37881 * 119.99549 * 61.45849 * 13 11 10 16 16 N 1.31516 * 120.00110 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99818 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47206 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47096 * 119.99961 * 17 15 13 20 20 H 1.48503 * 109.47083 * 239.99934 * 17 15 13 21 21 C 1.48556 * 110.99755 * 195.44570 * 8 7 6 22 22 C 1.38119 * 119.94514 * 0.27798 * 6 4 3 23 23 C 1.38239 * 119.97324 * 179.97438 * 2 1 3 24 24 C 1.50700 * 119.94524 * 0.02562 * 23 2 1 25 25 H 1.08991 * 109.47329 * 89.99570 * 1 2 3 26 26 H 1.08996 * 109.46830 * 209.99877 * 1 2 3 27 27 H 1.09001 * 109.46764 * 329.99633 * 1 2 3 28 28 H 1.08003 * 120.03013 * 0.02904 * 3 2 1 29 29 H 0.96696 * 114.00334 * 275.03437 * 5 4 3 30 30 H 1.09007 * 109.46960 * 315.22418 * 7 6 4 31 31 H 1.08998 * 109.46808 * 195.23220 * 7 6 4 32 32 H 1.08992 * 110.39036 * 40.24540 * 9 8 7 33 33 H 1.08996 * 110.50713 * 277.74752 * 9 8 7 34 34 H 1.09001 * 110.31830 * 217.31957 * 10 9 8 35 35 H 1.08999 * 110.32242 * 95.21869 * 10 9 8 36 36 H 0.96708 * 113.99640 * 298.54191 * 12 11 10 37 37 H 0.96998 * 120.00245 * 180.02562 * 16 15 13 38 38 H 1.09003 * 110.41457 * 82.18304 * 21 8 7 39 39 H 1.09000 * 110.41417 * 319.73615 * 21 8 7 40 40 H 1.07996 * 119.97690 * 179.72270 * 22 6 4 41 41 H 1.08998 * 109.46889 * 90.00372 * 24 23 2 42 42 H 1.08999 * 109.47717 * 210.00390 * 24 23 2 43 43 H 1.09002 * 109.46867 * 330.00600 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1963 0.0005 5 8 4.2656 2.3721 0.0011 6 6 4.2752 -0.0071 0.0005 7 6 5.7822 -0.0115 0.0017 8 7 6.2719 0.3397 1.3414 9 6 6.2168 -0.8335 2.2538 10 6 7.2181 -0.4956 3.3793 11 6 8.1997 0.5174 2.7550 12 8 9.5287 -0.0074 2.7666 13 6 8.1458 1.8260 3.5004 14 1 7.8431 2.7273 2.9881 15 6 8.4830 1.8726 4.8365 16 7 8.8510 0.7750 5.4605 17 14 8.4155 3.4945 5.7608 18 1 7.9738 4.5716 4.8389 19 1 7.4553 3.3824 6.8880 20 1 9.7645 3.8191 6.2901 21 6 7.7108 0.7070 1.3029 22 6 3.5806 -1.2009 -0.0058 23 6 2.1976 -1.1975 0.0005 24 6 1.4423 -2.5015 0.0005 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6573 2.1322 0.0005 29 1 4.3960 2.7515 -0.8787 30 1 6.1482 0.7173 -0.7216 31 1 6.1428 -1.0040 -0.2685 32 1 6.5255 -1.7375 1.7290 33 1 5.2130 -0.9534 2.6613 34 1 7.7500 -1.3932 3.6946 35 1 6.6986 -0.0470 4.2260 36 1 9.8721 -0.1891 3.6523 37 1 9.0879 0.8077 6.4006 38 1 7.8299 1.7456 0.9943 39 1 8.2544 0.0445 0.6292 40 1 4.1178 -2.1377 -0.0103 41 1 1.2606 -2.8161 -1.0271 42 1 2.0299 -3.2619 0.5148 43 1 0.4898 -2.3696 0.5139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843425800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:10 Heat of formation + Delta-G solvation = -91.264633 kcal Electronic energy + Delta-G solvation = -23809.092013 eV Core-core repulsion = 20431.978521 eV Total energy + Delta-G solvation = -3377.113492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10818 -39.86146 -37.98800 -36.80522 -34.19759 -34.12315 -32.57749 -31.45137 -29.77087 -28.69466 -27.34108 -26.37651 -24.80622 -23.14646 -22.17569 -21.33874 -20.97237 -19.04104 -18.68209 -17.36260 -17.00206 -16.86284 -16.44116 -16.05989 -15.67490 -15.60771 -14.98829 -14.98111 -14.48882 -14.28914 -14.12854 -13.86618 -13.72238 -13.54534 -13.42961 -13.14566 -12.99323 -12.79585 -12.58240 -12.40310 -12.38852 -12.25079 -12.21878 -12.05594 -11.91117 -11.81548 -11.21760 -10.95104 -10.60267 -10.13964 -9.64020 -9.28875 -9.12819 -8.19303 -6.31258 0.35371 0.41160 1.38135 1.40707 1.52662 2.40789 2.61698 3.03084 3.26076 3.42662 3.79101 3.88936 3.96631 4.01724 4.11608 4.29593 4.31851 4.36717 4.41219 4.50364 4.57461 4.65020 4.72511 4.76364 4.79900 4.83163 4.92043 5.02346 5.03285 5.05832 5.23912 5.24091 5.35338 5.37089 5.45070 5.60889 5.65801 5.74044 5.77569 6.00216 6.05078 6.18374 6.28479 6.73223 7.01283 7.36329 7.44021 8.86963 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.004233 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.851347 B = 6612.557857 C = 7017.639664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.079 4.079 3 C -0.161 4.161 4 C 0.113 3.887 5 O -0.502 6.502 6 C -0.115 4.115 7 C 0.093 3.907 8 N -0.497 5.497 9 C 0.046 3.954 10 C -0.111 4.111 11 C 0.233 3.767 12 O -0.601 6.601 13 C -0.539 4.539 14 H 0.048 0.952 15 C 0.026 3.974 16 N -0.915 5.915 17 Si 0.956 3.044 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.276 1.276 21 C 0.065 3.935 22 C -0.103 4.103 23 C -0.107 4.107 24 C -0.112 4.112 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.398 0.602 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.377 0.623 37 H 0.267 0.733 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.072 -4.903 -13.046 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.080 4.080 3 C -0.179 4.179 4 C 0.068 3.932 5 O -0.314 6.314 6 C -0.116 4.116 7 C -0.035 4.035 8 N -0.221 5.221 9 C -0.082 4.082 10 C -0.150 4.150 11 C 0.193 3.807 12 O -0.409 6.409 13 C -0.577 4.577 14 H 0.066 0.934 15 C -0.174 4.174 16 N -0.556 5.556 17 Si 0.782 3.218 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.201 1.201 21 C -0.063 4.063 22 C -0.122 4.122 23 C -0.107 4.107 24 C -0.168 4.168 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.256 0.744 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.226 0.774 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.148 0.852 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.393 -4.541 -12.749 21.258 hybrid contribution 1.041 0.399 0.679 1.305 sum -15.352 -4.142 -12.070 19.963 Atomic orbital electron populations 1.20903 0.88931 1.03700 1.03407 1.19951 0.97558 0.91643 0.98807 1.21482 0.92999 0.99277 1.04152 1.18446 0.90008 0.85138 0.99607 1.84936 1.76777 1.35164 1.34491 1.20095 0.95170 0.93339 1.02965 1.21025 0.91528 0.99950 0.90988 1.65297 1.16316 1.31739 1.08743 1.23053 0.99127 0.91628 0.94351 1.22615 0.97258 0.97979 0.97133 1.19489 0.79443 0.90676 0.91045 1.86075 1.33464 1.86700 1.34687 1.21866 1.45220 0.95073 0.95582 0.93402 1.25650 0.94037 0.99699 0.97983 1.69780 1.46392 1.28130 1.11314 0.85534 0.77751 0.80202 0.78271 1.19945 1.20542 1.20138 1.22778 0.87688 0.99630 0.96210 1.21000 0.94147 0.96997 1.00046 1.20042 0.93216 0.96332 1.01102 1.20869 1.00185 0.92493 1.03237 0.89652 0.89890 0.91267 0.84645 0.74411 0.90035 0.93341 0.93656 0.91324 0.93840 0.93876 0.77384 0.92327 0.91450 0.94643 0.85199 0.89897 0.91460 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.60 71.24 0.68 -0.94 16 2 C -0.08 -1.72 5.88 -19.88 -0.12 -1.84 16 3 C -0.16 -4.04 9.64 22.37 0.22 -3.83 16 4 C 0.11 3.35 6.68 22.51 0.15 3.50 16 5 O -0.50 -15.25 12.83 -92.36 -1.19 -16.44 16 6 C -0.11 -3.43 5.23 -19.77 -0.10 -3.54 16 7 C 0.09 3.01 4.62 85.56 0.40 3.41 16 8 N -0.50 -20.47 5.29 -885.60 -4.68 -25.15 16 9 C 0.05 1.90 6.28 86.42 0.54 2.44 16 10 C -0.11 -5.51 5.55 31.49 0.17 -5.33 16 11 C 0.23 12.28 1.05 -10.64 -0.01 12.27 16 12 O -0.60 -32.74 12.94 -148.98 -1.93 -34.67 16 13 C -0.54 -30.97 8.10 25.60 0.21 -30.76 16 14 H 0.05 2.82 7.53 -2.91 -0.02 2.80 16 15 C 0.03 1.43 5.02 84.66 0.43 1.86 16 16 N -0.92 -51.21 10.82 21.45 0.23 -50.98 16 17 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 18 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C 0.06 2.97 5.69 86.45 0.49 3.46 16 22 C -0.10 -2.66 9.32 22.26 0.21 -2.45 16 23 C -0.11 -2.35 5.88 -19.85 -0.12 -2.47 16 24 C -0.11 -1.68 9.60 71.24 0.68 -0.99 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 0.99 5.94 -2.39 -0.01 0.98 16 27 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 28 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.40 7.79 9.06 -74.06 -0.67 7.12 16 30 H 0.08 2.50 7.87 -2.38 -0.02 2.48 16 31 H 0.05 1.45 7.46 -2.39 -0.02 1.44 16 32 H 0.05 1.68 7.68 -2.39 -0.02 1.67 16 33 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.04 2.14 7.98 -2.39 -0.02 2.13 16 35 H 0.04 2.37 7.23 -2.39 -0.02 2.35 16 36 H 0.38 20.84 7.33 -74.05 -0.54 20.30 16 37 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.07 3.17 7.67 -2.39 -0.02 3.15 16 39 H 0.04 1.54 7.94 -2.39 -0.02 1.52 16 40 H 0.13 2.98 8.00 -2.91 -0.02 2.96 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 43 H 0.08 1.01 5.94 -2.39 -0.01 1.00 16 Total: -1.00 -67.00 345.48 -1.90 -68.90 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.19 Total: 36.66 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 3.83 Total: -25.22 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -4.45 Total: -76.13 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -3.11 Total: -51.10 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.00 -1.90 -68.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.368 kcal (2) G-P(sol) polarization free energy of solvation -67.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds