Wall clock time and date at job start Tue Mar 31 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99873 * 2 1 4 4 C 1.38221 * 119.99697 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00067 * 359.97438 * 4 3 2 6 6 C 1.38215 * 120.00294 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.00005 * 179.89040 * 2 1 3 8 8 C 1.50706 * 119.99800 * 0.06581 * 7 2 1 9 9 O 1.45196 * 109.46976 * 179.97438 * 8 7 2 10 10 C 1.34635 * 117.00076 * 180.02562 * 9 8 7 11 11 O 1.21511 * 119.99705 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00023 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.50707 * 109.47110 * 89.99583 * 13 12 10 15 15 H 1.07995 * 119.99680 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00181 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00154 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00117 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47247 * 89.99912 * 18 16 14 20 20 H 1.48496 * 109.47224 * 210.00265 * 18 16 14 21 21 H 1.48508 * 109.47089 * 330.00143 * 18 16 14 22 22 C 1.46501 * 120.00292 * 359.97438 * 12 10 9 23 23 C 1.53000 * 109.46939 * 300.00014 * 22 12 10 24 24 C 1.53002 * 109.46973 * 60.00279 * 22 12 10 25 25 H 1.09000 * 109.47303 * 89.99986 * 1 2 3 26 26 H 1.08998 * 109.47159 * 209.99985 * 1 2 3 27 27 H 1.09002 * 109.47176 * 329.99994 * 1 2 3 28 28 H 1.07999 * 120.00136 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99625 * 180.02562 * 4 3 2 30 30 H 1.08000 * 120.00419 * 180.02562 * 5 4 3 31 31 H 1.07995 * 120.00164 * 179.72593 * 6 5 4 32 32 H 1.09003 * 109.46561 * 299.93214 * 8 7 2 33 33 H 1.09000 * 109.47337 * 59.93272 * 8 7 2 34 34 H 1.08996 * 109.47867 * 210.00315 * 13 12 10 35 35 H 1.09007 * 109.47061 * 330.00322 * 13 12 10 36 36 H 0.97000 * 120.00006 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47642 * 179.97438 * 22 12 10 38 38 H 1.09005 * 109.46795 * 60.00220 * 23 22 12 39 39 H 1.09001 * 109.46811 * 179.97438 * 23 22 12 40 40 H 1.08998 * 109.47343 * 299.99883 * 23 22 12 41 41 H 1.08996 * 109.47234 * 60.00276 * 24 22 12 42 42 H 1.09001 * 109.46957 * 180.02562 * 24 22 12 43 43 H 1.09005 * 109.46868 * 299.99846 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1970 0.0027 7 6 2.1981 -1.1970 0.0023 8 6 1.4445 -2.5021 0.0033 9 8 2.3880 -3.6057 0.0051 10 6 1.8734 -4.8499 0.0056 11 8 0.6688 -5.0090 0.0051 12 7 2.6944 -5.9187 0.0078 13 6 2.1345 -7.2725 0.0090 14 6 1.9439 -7.7384 -1.4115 15 1 2.2133 -7.0911 -2.2329 16 6 1.4256 -8.9911 -1.6624 17 7 1.2597 -9.3980 -2.9020 18 14 0.9590 -10.1106 -0.2417 19 1 -0.4583 -9.8716 0.1321 20 1 1.1307 -11.5277 -0.6511 21 1 1.8336 -9.8225 0.9234 22 6 4.1468 -5.7268 0.0090 23 6 4.5592 -4.9465 -1.2408 24 6 4.5567 -4.9434 1.2577 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1326 0.0010 30 1 5.3517 -0.0001 0.0024 31 1 4.1206 -2.1323 -0.0010 32 1 0.8179 -2.5591 0.8934 33 1 0.8178 -2.5605 -0.8866 34 1 2.8174 -7.9478 0.5243 35 1 1.1726 -7.2674 0.5218 36 1 0.8954 -10.2795 -3.0785 37 1 4.6417 -6.6980 0.0112 38 1 4.0643 -3.9753 -1.2424 39 1 5.6397 -4.8034 -1.2396 40 1 4.2672 -5.5046 -2.1304 41 1 4.2629 -5.4993 2.1481 42 1 5.6372 -4.8003 1.2584 43 1 4.0618 -3.9722 1.2560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858945308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:44 Heat of formation + Delta-G solvation = -60.478139 kcal Electronic energy + Delta-G solvation = -23808.498471 eV Core-core repulsion = 20432.719982 eV Total energy + Delta-G solvation = -3375.778490 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23249 -39.34020 -36.74444 -35.60839 -33.20988 -32.85835 -31.70693 -31.16038 -27.97933 -27.22520 -26.80904 -26.07810 -23.07628 -21.94197 -21.75714 -20.82648 -19.47673 -17.11482 -16.97992 -16.70482 -16.04557 -15.88622 -15.32232 -15.00880 -14.43829 -14.28992 -13.97302 -13.68997 -13.52263 -13.21483 -13.14239 -12.60890 -12.58941 -12.43762 -12.36150 -12.10351 -12.03596 -11.81541 -11.36729 -11.09404 -11.04848 -10.92502 -10.77305 -10.53720 -10.38957 -10.31943 -10.12849 -9.78558 -9.48549 -8.85573 -8.65870 -8.59772 -7.81816 -6.09341 -4.08542 1.21950 1.31481 2.75576 3.28921 3.34706 3.36722 3.57863 3.65712 4.32122 4.38626 4.69433 4.73030 4.85917 4.99099 5.14734 5.22919 5.30993 5.38245 5.43673 5.48612 5.51802 5.56158 5.61225 5.69203 5.73076 5.92860 5.94681 6.00336 6.07374 6.16790 6.25429 6.32652 6.41943 6.45735 6.56595 6.65064 6.70413 6.80154 6.91323 7.02030 7.29815 7.57076 8.21735 8.45818 8.93755 9.07980 9.50263 11.03946 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024419 B = 0.004031 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.372057 B = 6944.356063 C = 7508.377559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.095 4.095 7 C -0.086 4.086 8 C 0.124 3.876 9 O -0.366 6.366 10 C 0.647 3.353 11 O -0.571 6.571 12 N -0.568 5.568 13 C 0.230 3.770 14 C -0.531 4.531 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.142 3.858 23 C -0.167 4.167 24 C -0.169 4.169 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.240 18.897 7.913 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.145 4.145 6 C -0.113 4.113 7 C -0.086 4.086 8 C 0.049 3.951 9 O -0.281 6.281 10 C 0.400 3.600 11 O -0.460 6.460 12 N -0.307 5.307 13 C 0.111 3.889 14 C -0.569 4.569 15 H 0.095 0.905 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.190 1.190 22 C 0.038 3.962 23 C -0.225 4.225 24 C -0.227 4.227 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.153 0.847 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.776 18.721 7.805 21.090 hybrid contribution -0.334 -0.687 0.479 0.902 sum 5.442 18.034 8.285 20.578 Atomic orbital electron populations 1.20877 0.91080 1.03106 1.02787 1.19604 0.96077 0.92139 1.00107 1.20932 0.94264 0.97073 1.01689 1.21131 0.94290 0.98040 1.00410 1.21162 0.99918 0.92435 1.00950 1.21144 0.93538 0.98763 0.97867 1.19559 0.94359 0.92918 1.01770 1.21486 0.89742 0.80921 1.02925 1.86270 1.39637 1.14406 1.87817 1.18050 0.84596 0.80302 0.77027 1.90955 1.13544 1.85409 1.56102 1.47098 1.04852 1.04724 1.74008 1.19745 0.94686 0.75830 0.98635 1.21349 1.43094 1.01225 0.91238 0.90544 1.24833 0.94851 0.97639 0.95577 1.69894 1.45120 1.19762 1.18663 0.86875 0.79826 0.80190 0.82932 1.19866 1.21020 1.19009 1.20989 0.80630 0.99920 0.94699 1.22282 1.00561 1.01360 0.98321 1.22340 1.01149 1.01569 0.97679 0.90742 0.91113 0.91376 0.86051 0.86254 0.86063 0.84681 0.90230 0.90013 0.94572 0.94337 0.92528 0.89037 0.91338 0.92381 0.91679 0.92808 0.91972 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.60 36.01 0.35 -0.79 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 6 C -0.10 -1.17 9.38 -39.58 -0.37 -1.54 16 7 C -0.09 -1.10 5.88 -104.62 -0.62 -1.72 16 8 C 0.12 1.85 4.58 36.01 0.16 2.01 16 9 O -0.37 -6.27 4.01 -40.31 -0.16 -6.44 16 10 C 0.65 13.85 7.76 54.05 0.42 14.27 16 11 O -0.57 -14.25 15.71 -19.28 -0.30 -14.55 16 12 N -0.57 -12.03 2.41 -173.23 -0.42 -12.45 16 13 C 0.23 5.62 4.20 -5.19 -0.02 5.60 16 14 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 15 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 18 Si 0.87 21.33 27.47 -169.99 -4.67 16.67 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 22 C 0.14 2.38 3.28 -67.93 -0.22 2.16 16 23 C -0.17 -2.63 9.12 37.16 0.34 -2.29 16 24 C -0.17 -2.30 9.12 37.16 0.34 -1.96 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.69 6.64 -51.93 -0.34 0.34 16 27 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.14 1.68 5.72 -52.49 -0.30 1.38 16 32 H 0.08 1.15 7.49 -51.93 -0.39 0.76 16 33 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.04 0.83 6.98 -51.93 -0.36 0.47 16 35 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.09 1.52 7.79 -51.93 -0.40 1.12 16 38 H 0.07 1.07 5.36 -51.93 -0.28 0.80 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.99 5.38 -51.93 -0.28 0.71 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -33.04 347.97 -7.92 -40.95 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.53 Total: 1.40 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.86 Total: -4.09 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.36 Total: -39.18 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.46 Total: -20.99 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.04 -7.92 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858945308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.524 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds