Wall clock time and date at job start Tue Mar 31 2020 06:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99873 * 2 1 4 4 C 1.38221 * 119.99697 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00067 * 359.97438 * 4 3 2 6 6 C 1.38215 * 120.00294 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.00005 * 179.89040 * 2 1 3 8 8 C 1.50706 * 119.99800 * 0.06581 * 7 2 1 9 9 O 1.45196 * 109.46976 * 179.97438 * 8 7 2 10 10 C 1.34635 * 117.00076 * 180.02562 * 9 8 7 11 11 O 1.21511 * 119.99705 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00023 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.50707 * 109.47110 * 89.99583 * 13 12 10 15 15 H 1.07995 * 119.99680 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00181 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00154 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00117 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47247 * 89.99912 * 18 16 14 20 20 H 1.48496 * 109.47224 * 210.00265 * 18 16 14 21 21 H 1.48508 * 109.47089 * 330.00143 * 18 16 14 22 22 C 1.46501 * 120.00292 * 359.97438 * 12 10 9 23 23 C 1.53000 * 109.46939 * 300.00014 * 22 12 10 24 24 C 1.53002 * 109.46973 * 60.00279 * 22 12 10 25 25 H 1.09000 * 109.47303 * 89.99986 * 1 2 3 26 26 H 1.08998 * 109.47159 * 209.99985 * 1 2 3 27 27 H 1.09002 * 109.47176 * 329.99994 * 1 2 3 28 28 H 1.07999 * 120.00136 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99625 * 180.02562 * 4 3 2 30 30 H 1.08000 * 120.00419 * 180.02562 * 5 4 3 31 31 H 1.07995 * 120.00164 * 179.72593 * 6 5 4 32 32 H 1.09003 * 109.46561 * 299.93214 * 8 7 2 33 33 H 1.09000 * 109.47337 * 59.93272 * 8 7 2 34 34 H 1.08996 * 109.47867 * 210.00315 * 13 12 10 35 35 H 1.09007 * 109.47061 * 330.00322 * 13 12 10 36 36 H 0.97000 * 120.00006 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47642 * 179.97438 * 22 12 10 38 38 H 1.09005 * 109.46795 * 60.00220 * 23 22 12 39 39 H 1.09001 * 109.46811 * 179.97438 * 23 22 12 40 40 H 1.08998 * 109.47343 * 299.99883 * 23 22 12 41 41 H 1.08996 * 109.47234 * 60.00276 * 24 22 12 42 42 H 1.09001 * 109.46957 * 180.02562 * 24 22 12 43 43 H 1.09005 * 109.46868 * 299.99846 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1970 0.0027 7 6 2.1981 -1.1970 0.0023 8 6 1.4445 -2.5021 0.0033 9 8 2.3880 -3.6057 0.0051 10 6 1.8734 -4.8499 0.0056 11 8 0.6688 -5.0090 0.0051 12 7 2.6944 -5.9187 0.0078 13 6 2.1345 -7.2725 0.0090 14 6 1.9439 -7.7384 -1.4115 15 1 2.2133 -7.0911 -2.2329 16 6 1.4256 -8.9911 -1.6624 17 7 1.2597 -9.3980 -2.9020 18 14 0.9590 -10.1106 -0.2417 19 1 -0.4583 -9.8716 0.1321 20 1 1.1307 -11.5277 -0.6511 21 1 1.8336 -9.8225 0.9234 22 6 4.1468 -5.7268 0.0090 23 6 4.5592 -4.9465 -1.2408 24 6 4.5567 -4.9434 1.2577 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1326 0.0010 30 1 5.3517 -0.0001 0.0024 31 1 4.1206 -2.1323 -0.0010 32 1 0.8179 -2.5591 0.8934 33 1 0.8178 -2.5605 -0.8866 34 1 2.8174 -7.9478 0.5243 35 1 1.1726 -7.2674 0.5218 36 1 0.8954 -10.2795 -3.0785 37 1 4.6417 -6.6980 0.0112 38 1 4.0643 -3.9753 -1.2424 39 1 5.6397 -4.8034 -1.2396 40 1 4.2672 -5.5046 -2.1304 41 1 4.2629 -5.4993 2.1481 42 1 5.6372 -4.8003 1.2584 43 1 4.0618 -3.9722 1.2560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858945308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:43 Heat of formation + Delta-G solvation = -79.254994 kcal Electronic energy + Delta-G solvation = -23809.312697 eV Core-core repulsion = 20432.719982 eV Total energy + Delta-G solvation = -3376.592715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.72023 -40.33682 -38.23056 -37.24207 -34.99172 -34.00228 -32.89800 -32.62854 -29.75660 -28.26116 -28.00947 -27.12229 -24.82384 -23.37909 -22.93925 -21.73060 -20.98137 -19.13968 -18.59772 -18.00450 -17.56651 -17.12574 -16.61135 -16.10915 -15.89814 -15.55339 -15.36353 -14.95368 -14.75893 -14.55207 -14.45408 -13.94825 -13.90019 -13.82212 -13.57867 -13.23823 -13.14280 -12.99486 -12.88074 -12.67797 -12.33455 -12.27498 -11.97772 -11.94979 -11.83719 -11.76373 -11.69101 -11.66326 -11.47530 -10.82294 -9.70561 -9.58617 -9.49393 -8.33247 -6.39344 0.37660 0.49344 1.21058 1.36078 1.38862 1.47367 1.87790 2.31829 2.82379 2.89465 3.02056 3.68214 3.94278 3.97897 4.07104 4.17988 4.22390 4.25436 4.27948 4.42315 4.46136 4.58331 4.70706 4.76100 4.77497 4.83198 4.85638 4.91514 4.92914 4.95997 5.00805 5.12387 5.20049 5.27961 5.36668 5.40928 5.45687 5.59658 5.62080 5.66957 5.71626 6.11490 6.22068 6.56120 6.62124 7.20632 7.41794 8.83776 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024419 B = 0.004031 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.372057 B = 6944.356063 C = 7508.377559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.088 4.088 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.130 4.130 6 C -0.111 4.111 7 C -0.108 4.108 8 C 0.124 3.876 9 O -0.348 6.348 10 C 0.644 3.356 11 O -0.615 6.615 12 N -0.574 5.574 13 C 0.239 3.761 14 C -0.539 4.539 15 H 0.028 0.972 16 C 0.013 3.987 17 N -0.945 5.945 18 Si 0.948 3.052 19 H -0.275 1.275 20 H -0.275 1.275 21 H -0.234 1.234 22 C 0.131 3.869 23 C -0.160 4.160 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.144 0.856 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.026 0.974 36 H 0.269 0.731 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.027 0.973 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.938 20.533 10.110 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.147 4.147 6 C -0.129 4.129 7 C -0.108 4.108 8 C 0.049 3.951 9 O -0.262 6.262 10 C 0.399 3.601 11 O -0.508 6.508 12 N -0.312 5.312 13 C 0.118 3.882 14 C -0.577 4.577 15 H 0.046 0.954 16 C -0.185 4.185 17 N -0.585 5.585 18 Si 0.770 3.230 19 H -0.201 1.201 20 H -0.200 1.200 21 H -0.157 1.157 22 C 0.028 3.972 23 C -0.217 4.217 24 C -0.215 4.215 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.531 20.401 10.011 23.940 hybrid contribution -0.821 -1.034 -0.313 1.357 sum 6.711 19.367 9.698 22.675 Atomic orbital electron populations 1.20910 0.90249 1.03652 1.03069 1.19842 0.96933 0.92090 0.99925 1.21288 0.94774 0.97417 1.00597 1.21542 0.94376 0.98963 0.98582 1.21440 1.01136 0.91952 1.00208 1.21202 0.93281 0.99538 0.98883 1.19482 0.94823 0.92100 1.04367 1.21623 0.89875 0.81272 1.02289 1.86292 1.39536 1.13243 1.87133 1.18218 0.84043 0.81483 0.76354 1.90912 1.15509 1.86308 1.58031 1.47169 1.06761 1.03696 1.73598 1.19473 0.94993 0.77991 0.95774 1.21535 1.43085 1.00879 0.92233 0.95408 1.25836 0.94503 0.99457 0.98709 1.70051 1.46383 1.20623 1.21411 0.85724 0.79632 0.77795 0.79862 1.20094 1.20005 1.15695 1.21371 0.77972 1.00987 0.96825 1.22214 1.02947 1.00291 0.96276 1.22238 1.03222 1.00467 0.95552 0.90566 0.92239 0.89170 0.83423 0.83257 0.83849 0.85373 0.90306 0.91516 0.91999 0.95637 0.92212 0.88696 0.91623 0.88543 0.95344 0.92705 0.88500 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 9.60 71.24 0.68 -1.52 16 2 C -0.09 -1.87 5.88 -19.87 -0.12 -1.98 16 3 C -0.12 -2.08 9.70 22.27 0.22 -1.87 16 4 C -0.12 -1.85 10.05 22.27 0.22 -1.62 16 5 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 6 C -0.11 -2.61 9.38 22.27 0.21 -2.41 16 7 C -0.11 -2.75 5.88 -19.86 -0.12 -2.87 16 8 C 0.12 3.85 4.58 71.24 0.33 4.17 16 9 O -0.35 -12.25 4.01 -55.45 -0.22 -12.47 16 10 C 0.64 28.54 7.76 129.79 1.01 29.55 16 11 O -0.62 -32.10 15.71 19.81 0.31 -31.79 16 12 N -0.57 -24.67 2.41 -932.38 -2.24 -26.92 16 13 C 0.24 11.72 4.20 85.64 0.36 12.07 16 14 C -0.54 -31.96 9.94 25.60 0.25 -31.70 16 15 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 16 C 0.01 0.77 5.47 84.65 0.46 1.24 16 17 N -0.94 -59.95 13.96 21.44 0.30 -59.66 16 18 Si 0.95 44.00 27.47 68.60 1.88 45.89 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.23 -9.61 6.54 99.48 0.65 -8.96 16 22 C 0.13 4.28 3.28 44.99 0.15 4.43 16 23 C -0.16 -4.98 9.12 71.98 0.66 -4.32 16 24 C -0.16 -3.90 9.12 71.98 0.66 -3.24 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.19 6.64 -2.39 -0.02 1.17 16 27 H 0.09 1.19 8.09 -2.39 -0.02 1.17 16 28 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 29 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 30 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.13 3.09 5.72 -2.91 -0.02 3.07 16 32 H 0.08 2.41 7.49 -2.39 -0.02 2.39 16 33 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 34 H 0.06 2.73 6.98 -2.39 -0.02 2.71 16 35 H 0.03 1.33 6.85 -2.38 -0.02 1.31 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.09 3.04 7.79 -2.39 -0.02 3.02 16 38 H 0.06 2.07 5.36 -2.38 -0.01 2.06 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 1.73 5.38 -2.38 -0.01 1.72 16 Total: -1.00 -75.65 347.97 6.16 -69.49 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.94 Total: 17.67 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.19 Total: -2.21 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.94 Total: -86.57 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: 0.09 Total: -44.27 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.89 kcal Total: -75.65 6.16 -69.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858945308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.768 kcal (2) G-P(sol) polarization free energy of solvation -75.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds