Wall clock time and date at job start Tue Mar 31 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 8 8 C 1.50703 * 120.00222 * 359.97438 * 7 2 1 9 9 O 1.45189 * 109.47280 * 179.97438 * 8 7 2 10 10 C 1.34635 * 117.00345 * 179.97438 * 9 8 7 11 11 O 1.21517 * 120.00024 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00603 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00443 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47281 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47174 * 300.00070 * 14 13 12 16 16 C 1.53004 * 109.47064 * 59.99752 * 14 13 12 17 17 C 1.50696 * 109.46940 * 179.97438 * 14 13 12 18 18 H 1.07998 * 120.00294 * 359.97438 * 17 14 13 19 19 C 1.37883 * 119.99866 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99856 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00202 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.46843 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47325 * 119.99558 * 21 19 17 24 24 H 1.48492 * 109.47315 * 240.00093 * 21 19 17 25 25 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 28 28 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 30 30 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 31 31 H 1.07999 * 120.00245 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.47234 * 300.00356 * 8 7 2 33 33 H 1.09003 * 109.46847 * 59.99501 * 8 7 2 34 34 H 0.97005 * 119.99578 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.46729 * 299.99695 * 13 12 10 36 36 H 1.09003 * 109.47037 * 60.00017 * 13 12 10 37 37 H 1.09004 * 109.47462 * 59.99851 * 15 14 13 38 38 H 1.08998 * 109.47318 * 179.97438 * 15 14 13 39 39 H 1.09003 * 109.47317 * 299.99817 * 15 14 13 40 40 H 1.09006 * 109.46759 * 59.99769 * 16 14 13 41 41 H 1.08991 * 109.46944 * 179.97438 * 16 14 13 42 42 H 1.09000 * 109.46882 * 300.00323 * 16 14 13 43 43 H 0.97000 * 119.99516 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1970 -0.0058 8 6 1.4446 -2.5021 -0.0115 9 8 2.3881 -3.6056 -0.0176 10 6 1.8735 -4.8498 -0.0227 11 8 0.6688 -5.0090 -0.0226 12 7 2.6945 -5.9186 -0.0280 13 6 2.1345 -7.2724 -0.0341 14 6 3.2726 -8.2950 -0.0399 15 6 4.1330 -8.0934 -1.2888 16 6 4.1350 -8.1054 1.2096 17 6 2.6965 -9.6875 -0.0455 18 1 1.6258 -9.8291 -0.0446 19 6 3.5364 -10.7810 -0.0508 20 7 4.8403 -10.6087 -0.0514 21 14 2.8225 -12.5072 -0.0585 22 1 1.3394 -12.4294 -0.0571 23 1 3.2797 -13.2266 -1.2745 24 1 3.2805 -13.2377 1.1504 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.6583 2.1326 0.0004 29 1 4.1205 2.1326 0.0089 30 1 5.3517 0.0000 0.0002 31 1 4.1206 -2.1323 -0.0101 32 1 0.8182 -2.5639 0.8784 33 1 0.8175 -2.5556 -0.9015 34 1 3.6562 -5.7915 -0.0285 35 1 1.5212 -7.4159 0.8555 36 1 1.5205 -7.4076 -0.9245 37 1 4.5497 -7.0862 -1.2843 38 1 4.9440 -8.8216 -1.2927 39 1 3.5187 -8.2285 -2.1790 40 1 3.5219 -8.2490 2.0994 41 1 4.9454 -8.8342 1.2057 42 1 4.5515 -7.0981 1.2141 43 1 5.4311 -11.3780 -0.0555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859184201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:38 Heat of formation + Delta-G solvation = -71.927932 kcal Electronic energy + Delta-G solvation = -22784.798098 eV Core-core repulsion = 19408.523108 eV Total energy + Delta-G solvation = -3376.274990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31945 -39.43988 -37.13446 -35.77329 -33.49609 -33.22155 -31.84567 -30.82680 -27.59943 -26.45780 -25.74248 -25.58596 -24.83837 -22.38682 -21.01454 -20.83492 -18.96477 -18.33096 -16.95977 -16.42667 -16.20949 -15.74855 -15.32153 -14.90426 -14.77452 -14.47256 -13.91624 -13.74801 -13.59465 -13.27082 -12.95560 -12.77329 -12.54749 -12.40189 -12.22345 -12.15856 -11.43989 -11.23412 -11.18522 -11.05426 -10.92524 -10.68116 -10.67651 -10.40745 -10.30889 -10.13341 -9.66954 -9.39796 -8.95932 -8.81870 -8.78104 -8.55726 -8.37846 -6.04624 -4.14982 1.11329 1.21859 2.48660 3.22514 3.26232 3.35007 3.39546 3.55237 4.34736 4.43142 4.60844 4.68079 4.84655 4.92145 5.04514 5.22409 5.22684 5.24122 5.36961 5.41713 5.51469 5.62739 5.83747 5.93895 6.08223 6.23596 6.25712 6.32910 6.38780 6.46590 6.58059 6.75088 6.81240 6.82092 6.88813 6.96998 6.99202 7.32424 7.53339 7.67267 7.94781 7.98463 8.11502 8.34978 8.75468 8.86263 9.51035 10.96914 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.002798 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.459423 B =10003.912621 C =10573.711404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.126 4.126 6 C -0.093 4.093 7 C -0.091 4.091 8 C 0.132 3.868 9 O -0.374 6.374 10 C 0.640 3.360 11 O -0.582 6.582 12 N -0.693 5.693 13 C 0.148 3.852 14 C 0.057 3.943 15 C -0.133 4.133 16 C -0.133 4.133 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.066 3.934 20 N -0.885 5.885 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.405 0.595 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.008 0.992 38 H 0.087 0.913 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.087 0.913 42 H 0.008 0.992 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 20.996 0.116 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.136 4.136 5 C -0.144 4.144 6 C -0.111 4.111 7 C -0.092 4.092 8 C 0.057 3.943 9 O -0.288 6.288 10 C 0.392 3.608 11 O -0.472 6.472 12 N -0.352 5.352 13 C 0.027 3.973 14 C 0.056 3.944 15 C -0.190 4.190 16 C -0.190 4.190 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.135 4.135 20 N -0.523 5.523 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.241 0.759 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.027 0.973 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.428 20.846 0.115 20.987 hybrid contribution 0.059 -0.839 0.000 0.841 sum -2.369 20.007 0.115 20.147 Atomic orbital electron populations 1.20880 0.91032 1.03195 1.02739 1.19594 0.96075 0.92100 1.00132 1.20945 0.94280 0.97095 1.01607 1.21162 0.94301 0.98107 1.00078 1.21188 1.00069 0.92385 1.00735 1.21086 0.93493 0.98805 0.97735 1.19534 0.94397 0.92806 1.02422 1.21500 0.89329 0.80439 1.03039 1.86154 1.40575 1.14392 1.87694 1.18234 0.84869 0.80657 0.77033 1.90959 1.13629 1.85916 1.56737 1.45199 1.09777 1.04359 1.75846 1.21836 0.97924 0.76678 1.00911 1.18391 0.90622 0.92331 0.93075 1.21848 1.01584 0.98100 0.97497 1.21850 1.01593 0.98116 0.97481 1.20992 0.93086 0.89403 1.50996 0.92262 1.24883 0.94831 0.99068 0.94728 1.69818 1.02035 1.30014 1.50468 0.86495 0.79399 0.84330 0.77543 1.19734 1.21041 1.21049 0.90764 0.91246 0.91154 0.85929 0.86105 0.85890 0.84795 0.89945 0.89928 0.75948 0.92340 0.92348 0.97342 0.89480 0.95321 0.95327 0.89471 0.97339 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.60 36.01 0.35 -0.62 16 2 C -0.08 -0.80 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 4 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 5 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 6 C -0.09 -1.09 9.38 -39.58 -0.37 -1.46 16 7 C -0.09 -1.08 5.88 -104.62 -0.62 -1.70 16 8 C 0.13 1.73 4.58 36.01 0.16 1.89 16 9 O -0.37 -5.83 8.74 -40.31 -0.35 -6.18 16 10 C 0.64 11.83 8.75 54.05 0.47 12.31 16 11 O -0.58 -12.27 16.13 -19.29 -0.31 -12.58 16 12 N -0.69 -12.82 4.96 -65.28 -0.32 -13.14 16 13 C 0.15 3.11 4.50 -4.04 -0.02 3.09 16 14 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 16 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 17 C -0.51 -13.07 8.01 -34.44 -0.28 -13.35 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 20 N -0.88 -23.36 9.35 55.43 0.52 -22.84 16 21 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.07 0.58 6.64 -51.93 -0.34 0.23 16 28 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 30 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.13 1.60 6.99 -52.49 -0.37 1.23 16 32 H 0.08 1.06 8.13 -51.93 -0.42 0.63 16 33 H 0.08 1.05 7.49 -51.93 -0.39 0.67 16 34 H 0.40 6.90 6.27 -40.82 -0.26 6.65 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 38 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 42 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 43 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -28.37 348.64 -8.36 -36.73 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.47 Total: 5.56 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.66 Total: -8.30 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.19 Total: -35.98 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.66 Total: -18.76 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.37 -8.36 -36.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859184201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.195 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds