Wall clock time and date at job start Tue Mar 31 2020 06:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 8 8 C 1.50703 * 120.00222 * 359.97438 * 7 2 1 9 9 O 1.45189 * 109.47280 * 179.97438 * 8 7 2 10 10 C 1.34635 * 117.00345 * 179.97438 * 9 8 7 11 11 O 1.21517 * 120.00024 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00603 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00443 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47281 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47174 * 300.00070 * 14 13 12 16 16 C 1.53004 * 109.47064 * 59.99752 * 14 13 12 17 17 C 1.50696 * 109.46940 * 179.97438 * 14 13 12 18 18 H 1.07998 * 120.00294 * 359.97438 * 17 14 13 19 19 C 1.37883 * 119.99866 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99856 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00202 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.46843 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47325 * 119.99558 * 21 19 17 24 24 H 1.48492 * 109.47315 * 240.00093 * 21 19 17 25 25 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 28 28 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 30 30 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 31 31 H 1.07999 * 120.00245 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.47234 * 300.00356 * 8 7 2 33 33 H 1.09003 * 109.46847 * 59.99501 * 8 7 2 34 34 H 0.97005 * 119.99578 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.46729 * 299.99695 * 13 12 10 36 36 H 1.09003 * 109.47037 * 60.00017 * 13 12 10 37 37 H 1.09004 * 109.47462 * 59.99851 * 15 14 13 38 38 H 1.08998 * 109.47318 * 179.97438 * 15 14 13 39 39 H 1.09003 * 109.47317 * 299.99817 * 15 14 13 40 40 H 1.09006 * 109.46759 * 59.99769 * 16 14 13 41 41 H 1.08991 * 109.46944 * 179.97438 * 16 14 13 42 42 H 1.09000 * 109.46882 * 300.00323 * 16 14 13 43 43 H 0.97000 * 119.99516 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1970 -0.0058 8 6 1.4446 -2.5021 -0.0115 9 8 2.3881 -3.6056 -0.0176 10 6 1.8735 -4.8498 -0.0227 11 8 0.6688 -5.0090 -0.0226 12 7 2.6945 -5.9186 -0.0280 13 6 2.1345 -7.2724 -0.0341 14 6 3.2726 -8.2950 -0.0399 15 6 4.1330 -8.0934 -1.2888 16 6 4.1350 -8.1054 1.2096 17 6 2.6965 -9.6875 -0.0455 18 1 1.6258 -9.8291 -0.0446 19 6 3.5364 -10.7810 -0.0508 20 7 4.8403 -10.6087 -0.0514 21 14 2.8225 -12.5072 -0.0585 22 1 1.3394 -12.4294 -0.0571 23 1 3.2797 -13.2266 -1.2745 24 1 3.2805 -13.2377 1.1504 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.6583 2.1326 0.0004 29 1 4.1205 2.1326 0.0089 30 1 5.3517 0.0000 0.0002 31 1 4.1206 -2.1323 -0.0101 32 1 0.8182 -2.5639 0.8784 33 1 0.8175 -2.5556 -0.9015 34 1 3.6562 -5.7915 -0.0285 35 1 1.5212 -7.4159 0.8555 36 1 1.5205 -7.4076 -0.9245 37 1 4.5497 -7.0862 -1.2843 38 1 4.9440 -8.8216 -1.2927 39 1 3.5187 -8.2285 -2.1790 40 1 3.5219 -8.2490 2.0994 41 1 4.9454 -8.8342 1.2057 42 1 4.5515 -7.0981 1.2141 43 1 5.4311 -11.3780 -0.0555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859184201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:37 Heat of formation + Delta-G solvation = -86.324353 kcal Electronic energy + Delta-G solvation = -22785.422374 eV Core-core repulsion = 19408.523108 eV Total energy + Delta-G solvation = -3376.899265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.64154 -40.36047 -38.71863 -37.29701 -35.16324 -34.03704 -32.93688 -32.42661 -28.47343 -27.57280 -27.56926 -27.23982 -26.48124 -23.37815 -22.18619 -21.75787 -20.69471 -19.85756 -18.11160 -17.77592 -17.75226 -17.09661 -16.66770 -16.15625 -15.80409 -15.67034 -15.45595 -14.96547 -14.80051 -14.56537 -14.06690 -14.05167 -13.96325 -13.50492 -13.22746 -13.15138 -13.08350 -12.90745 -12.70682 -12.56552 -12.27445 -12.13924 -11.95356 -11.91195 -11.85479 -11.74492 -11.50176 -11.24281 -10.71223 -10.41009 -10.12146 -9.72432 -9.53000 -8.02160 -6.18020 0.35020 0.46495 1.12190 1.43116 1.47719 1.56897 1.72806 2.46603 2.79734 3.21353 3.22062 3.68254 3.93662 4.03809 4.16093 4.21577 4.25611 4.35465 4.45314 4.47696 4.64647 4.68730 4.79015 4.83763 4.89091 4.92770 5.05265 5.06800 5.10809 5.14265 5.18872 5.28149 5.33423 5.50948 5.58397 5.62721 5.66336 5.67937 5.68330 6.08766 6.13368 6.19791 6.41947 6.46255 6.86341 7.29195 7.49922 8.97285 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.002798 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.459423 B =10003.912621 C =10573.711404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.085 4.085 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.133 4.133 6 C -0.114 4.114 7 C -0.112 4.112 8 C 0.130 3.870 9 O -0.366 6.366 10 C 0.645 3.355 11 O -0.609 6.609 12 N -0.688 5.688 13 C 0.163 3.837 14 C 0.053 3.947 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.526 4.526 18 H 0.049 0.951 19 C 0.028 3.972 20 N -0.900 5.900 21 Si 0.947 3.053 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.413 0.587 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 23.056 0.128 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.151 4.151 6 C -0.132 4.132 7 C -0.112 4.112 8 C 0.056 3.944 9 O -0.280 6.280 10 C 0.397 3.603 11 O -0.501 6.501 12 N -0.347 5.347 13 C 0.041 3.959 14 C 0.052 3.948 15 C -0.181 4.181 16 C -0.181 4.181 17 C -0.565 4.565 18 H 0.067 0.933 19 C -0.172 4.172 20 N -0.538 5.538 21 Si 0.774 3.226 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.167 0.833 29 H 0.166 0.834 30 H 0.158 0.842 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.250 0.750 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.040 0.960 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.347 22.932 0.126 23.052 hybrid contribution 0.049 -1.359 -0.002 1.360 sum -2.298 21.573 0.124 21.695 Atomic orbital electron populations 1.20927 0.89763 1.03812 1.03346 1.19866 0.97174 0.91870 0.99625 1.21318 0.94620 0.97666 1.00457 1.21544 0.94568 0.98811 0.98548 1.21433 1.01076 0.92161 1.00409 1.21140 0.93636 0.99302 0.99146 1.19537 0.94602 0.92579 1.04466 1.21690 0.89292 0.80247 1.03140 1.86173 1.40988 1.13711 1.87116 1.18214 0.84314 0.81366 0.76365 1.90941 1.14854 1.86501 1.57846 1.44939 1.10146 1.03662 1.75945 1.21437 0.96946 0.77565 0.99938 1.18376 0.91190 0.91682 0.93556 1.21702 1.00568 0.98955 0.96905 1.21704 1.00576 0.98971 0.96887 1.21268 0.92786 0.91202 1.51253 0.93268 1.25464 0.95206 1.01874 0.94655 1.69923 1.02613 1.30653 1.50657 0.85673 0.78619 0.80872 0.77435 1.19818 1.20824 1.20834 0.90079 0.89339 0.91877 0.83259 0.83356 0.84242 0.85878 0.89932 0.89892 0.74956 0.93352 0.93361 0.94687 0.91745 0.95940 0.95950 0.91737 0.94685 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 9.60 71.24 0.68 -1.05 16 2 C -0.09 -1.58 5.88 -19.86 -0.12 -1.69 16 3 C -0.12 -1.86 9.70 22.27 0.22 -1.64 16 4 C -0.12 -1.75 10.05 22.27 0.22 -1.52 16 5 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 6 C -0.11 -2.59 9.38 22.27 0.21 -2.38 16 7 C -0.11 -2.56 5.88 -19.87 -0.12 -2.68 16 8 C 0.13 3.40 4.58 71.24 0.33 3.72 16 9 O -0.37 -11.30 8.74 -55.44 -0.48 -11.78 16 10 C 0.64 23.58 8.75 129.79 1.14 24.72 16 11 O -0.61 -25.66 16.13 19.79 0.32 -25.34 16 12 N -0.69 -24.92 4.96 -590.84 -2.93 -27.86 16 13 C 0.16 6.87 4.50 86.38 0.39 7.26 16 14 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 15 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 16 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 17 C -0.53 -27.38 8.01 25.60 0.21 -27.17 16 18 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 19 C 0.03 1.45 5.15 84.66 0.44 1.88 16 20 N -0.90 -47.64 9.35 21.45 0.20 -47.44 16 21 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 27 H 0.06 0.98 6.64 -2.39 -0.02 0.96 16 28 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 30 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 31 H 0.12 2.94 6.99 -2.91 -0.02 2.92 16 32 H 0.08 2.11 8.13 -2.39 -0.02 2.09 16 33 H 0.08 2.12 7.49 -2.39 -0.02 2.10 16 34 H 0.41 13.51 6.27 -92.70 -0.58 12.93 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.03 1.32 6.86 -2.38 -0.02 1.30 16 38 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 39 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 42 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 43 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -60.03 348.64 4.50 -55.52 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.42 Total: 22.85 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 4.95 Total: -10.14 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -2.73 Total: -75.30 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.17 Total: -37.12 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -60.03 4.50 -55.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859184201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.800 kcal (2) G-P(sol) polarization free energy of solvation -60.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds