Wall clock time and date at job start Tue Mar 31 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99420 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00378 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46889 * 59.99994 * 12 10 8 14 14 H 1.48501 * 109.47074 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46838 * 300.00052 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 C 1.53002 * 109.46688 * 179.97438 * 18 16 6 20 20 C 1.53005 * 109.47122 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.47122 * 179.97438 * 20 19 18 22 22 O 1.42901 * 109.46828 * 180.02562 * 21 20 19 23 23 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 24 24 C 1.38114 * 119.93006 * 359.97438 * 23 5 4 25 25 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 26 26 H 1.09004 * 109.47265 * 30.23327 * 1 2 3 27 27 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 28 28 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 29 29 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 30 30 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 31 31 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 32 32 H 0.97011 * 119.99942 * 179.97438 * 11 10 8 33 33 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 34 34 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 35 35 H 1.08993 * 109.47113 * 299.99242 * 19 18 16 36 36 H 1.08999 * 109.47271 * 59.99754 * 19 18 16 37 37 H 1.08998 * 109.47162 * 300.00001 * 20 19 18 38 38 H 1.08999 * 109.46980 * 59.99905 * 20 19 18 39 39 H 1.09001 * 109.46996 * 299.99271 * 21 20 19 40 40 H 1.08999 * 109.47271 * 60.00083 * 21 20 19 41 41 H 0.96704 * 114.00053 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.02798 * 180.02562 * 23 5 4 43 43 H 1.08000 * 119.96158 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.7634 -0.7532 -3.6011 12 14 7.6473 1.8765 -4.4655 13 1 8.4488 2.9181 -3.7743 14 1 8.3902 1.3874 -5.6547 15 1 6.3496 2.4555 -4.8968 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 6 8.3601 1.0716 2.3837 20 6 9.8863 1.1732 2.3449 21 6 10.3966 1.7012 3.6872 22 8 11.8220 1.7966 3.6507 23 6 3.5780 -1.2019 0.0048 24 6 2.1968 -1.1984 0.0053 25 1 -0.3633 0.0042 1.0276 26 1 -0.3634 0.8879 -0.5175 27 1 -0.3633 -0.8920 -0.5102 28 1 1.6553 2.1327 0.0007 29 1 4.1164 2.1380 -0.0101 30 1 7.3583 -0.9083 -0.8570 31 1 5.8170 -1.2467 -1.6806 32 1 8.2405 -0.9034 -4.4324 33 1 8.2751 -0.4415 0.8524 34 1 8.1480 1.2271 0.2458 35 1 7.9349 2.0573 2.5722 36 1 8.0619 0.3890 3.1794 37 1 10.3114 0.1873 2.1566 38 1 10.1849 1.8556 1.5492 39 1 9.9717 2.6872 3.8750 40 1 10.0980 1.0191 4.4832 41 1 12.2153 2.1257 4.4705 42 1 4.1163 -2.1382 0.0094 43 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865040793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:19 Heat of formation + Delta-G solvation = -82.712429 kcal Electronic energy + Delta-G solvation = -23022.755156 eV Core-core repulsion = 19646.012515 eV Total energy + Delta-G solvation = -3376.742641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.90308 -38.25857 -37.13809 -35.23550 -34.16157 -32.82321 -31.47143 -30.54135 -29.18988 -27.48152 -25.98167 -23.86679 -23.07661 -22.11468 -21.38937 -20.62818 -18.65647 -17.32017 -16.79554 -16.58891 -15.92987 -15.77437 -15.11624 -15.01808 -14.48737 -14.39586 -14.16275 -13.67685 -13.52317 -13.14535 -13.04036 -12.81914 -12.38405 -12.10505 -11.84399 -11.68138 -11.49608 -11.44876 -11.39947 -11.25243 -10.99819 -10.85455 -10.71678 -10.67166 -10.40710 -10.21268 -9.97404 -9.85776 -9.17333 -8.59494 -8.49914 -8.43948 -7.58762 -6.21486 -4.28954 1.72748 1.84477 3.23202 3.27316 3.28269 3.34099 3.76421 4.16334 4.24706 4.33064 5.04669 5.12095 5.13801 5.15844 5.17687 5.27036 5.38924 5.46473 5.52327 5.58209 5.68731 5.71401 5.82238 5.89160 5.96229 6.02776 6.07053 6.09543 6.15827 6.29388 6.43920 6.50895 6.60496 6.66246 6.84854 6.94053 6.97440 7.14539 7.26308 7.56079 7.65062 7.74919 7.99709 8.19914 8.73718 8.95293 9.38615 10.85452 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009487 B = 0.005341 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.768650 B = 5241.251914 C = 7508.259878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.106 4.106 3 C -0.113 4.113 4 C -0.104 4.104 5 C 0.173 3.827 6 N -0.563 5.563 7 C 0.239 3.761 8 C -0.538 4.538 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.276 1.276 16 C 0.521 3.479 17 O -0.563 6.563 18 C -0.132 4.132 19 C -0.098 4.098 20 C -0.121 4.121 21 C 0.076 3.924 22 O -0.577 6.577 23 C -0.122 4.122 24 C -0.113 4.113 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.267 0.733 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.375 0.625 42 H 0.121 0.879 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 1.602 9.723 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.107 4.107 3 C -0.132 4.132 4 C -0.123 4.123 5 C 0.081 3.919 6 N -0.291 5.291 7 C 0.121 3.879 8 C -0.577 4.577 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.724 3.276 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.311 3.689 17 O -0.443 6.443 18 C -0.172 4.172 19 C -0.137 4.137 20 C -0.159 4.159 21 C -0.002 4.002 22 O -0.382 6.382 23 C -0.141 4.141 24 C -0.132 4.132 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.222 0.778 42 H 0.139 0.861 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.011 1.410 9.465 10.376 hybrid contribution 0.372 0.896 -0.439 1.065 sum -3.639 2.306 9.026 10.001 Atomic orbital electron populations 1.20709 0.91649 1.02302 1.01744 1.19787 0.95662 0.93245 1.01961 1.20799 0.93588 0.97279 1.01486 1.21205 0.93996 0.97671 0.99440 1.17574 0.83728 0.92794 0.97754 1.46005 1.03226 1.62432 1.17398 1.19564 0.91854 0.95504 0.80984 1.21382 1.37084 0.95181 1.04011 0.92113 1.24916 0.95148 0.95931 0.97627 1.69908 1.37718 1.20507 1.24716 0.86567 0.78538 0.82279 0.80209 1.19986 1.21065 1.20108 1.20689 0.90347 0.75898 0.81942 1.90617 1.70921 1.50586 1.32183 1.21598 0.91807 1.04376 0.99380 1.21229 0.93196 1.02174 0.97054 1.21546 0.95480 1.02401 0.96466 1.22232 0.80350 0.99334 0.98270 1.86501 1.20780 1.89438 1.41444 1.21187 0.94174 0.97493 1.01265 1.20764 0.93493 0.97264 1.01651 0.91713 0.91919 0.91908 0.86397 0.86340 0.93850 0.94404 0.92377 0.88945 0.87477 0.91440 0.91594 0.91121 0.90955 0.93706 0.93742 0.77833 0.86100 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.11 -1.61 5.88 -104.59 -0.62 -2.22 16 3 C -0.11 -1.85 9.69 -39.61 -0.38 -2.23 16 4 C -0.10 -2.01 9.55 -39.39 -0.38 -2.39 16 5 C 0.17 3.58 4.75 -83.69 -0.40 3.18 16 6 N -0.56 -12.20 2.51 -114.74 -0.29 -12.49 16 7 C 0.24 5.68 4.88 -5.19 -0.03 5.65 16 8 C -0.54 -13.89 9.16 -34.44 -0.32 -14.21 16 9 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -24.37 13.29 55.43 0.74 -23.63 16 12 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 C 0.52 10.85 7.53 -10.99 -0.08 10.77 16 17 O -0.56 -12.67 15.74 5.55 0.09 -12.59 16 18 C -0.13 -2.34 4.36 -27.88 -0.12 -2.47 16 19 C -0.10 -1.48 4.50 -26.73 -0.12 -1.60 16 20 C -0.12 -1.64 5.58 -26.73 -0.15 -1.79 16 21 C 0.08 0.88 7.05 37.16 0.26 1.14 16 22 O -0.58 -6.83 13.66 -35.23 -0.48 -7.32 16 23 C -0.12 -2.24 9.69 -39.39 -0.38 -2.63 16 24 C -0.11 -1.78 9.69 -39.61 -0.38 -2.17 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.04 1.03 6.47 -51.93 -0.34 0.70 16 31 H 0.04 0.96 7.86 -51.93 -0.41 0.55 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.09 1.58 7.26 -51.93 -0.38 1.20 16 34 H 0.11 2.01 7.91 -51.93 -0.41 1.60 16 35 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.38 2.53 9.12 45.56 0.42 2.95 16 42 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 43 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -30.72 363.89 -8.46 -39.18 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.15 Total: 5.97 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.83 Total: -10.14 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.45 Total: -36.12 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.39 Total: -19.90 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.72 -8.46 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865040793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.530 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds