Wall clock time and date at job start Tue Mar 31 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99420 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00378 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46889 * 59.99994 * 12 10 8 14 14 H 1.48501 * 109.47074 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46838 * 300.00052 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 C 1.53002 * 109.46688 * 179.97438 * 18 16 6 20 20 C 1.53005 * 109.47122 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.47122 * 179.97438 * 20 19 18 22 22 O 1.42901 * 109.46828 * 180.02562 * 21 20 19 23 23 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 24 24 C 1.38114 * 119.93006 * 359.97438 * 23 5 4 25 25 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 26 26 H 1.09004 * 109.47265 * 30.23327 * 1 2 3 27 27 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 28 28 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 29 29 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 30 30 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 31 31 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 32 32 H 0.97011 * 119.99942 * 179.97438 * 11 10 8 33 33 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 34 34 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 35 35 H 1.08993 * 109.47113 * 299.99242 * 19 18 16 36 36 H 1.08999 * 109.47271 * 59.99754 * 19 18 16 37 37 H 1.08998 * 109.47162 * 300.00001 * 20 19 18 38 38 H 1.08999 * 109.46980 * 59.99905 * 20 19 18 39 39 H 1.09001 * 109.46996 * 299.99271 * 21 20 19 40 40 H 1.08999 * 109.47271 * 60.00083 * 21 20 19 41 41 H 0.96704 * 114.00053 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.02798 * 180.02562 * 23 5 4 43 43 H 1.08000 * 119.96158 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.7634 -0.7532 -3.6011 12 14 7.6473 1.8765 -4.4655 13 1 8.4488 2.9181 -3.7743 14 1 8.3902 1.3874 -5.6547 15 1 6.3496 2.4555 -4.8968 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 6 8.3601 1.0716 2.3837 20 6 9.8863 1.1732 2.3449 21 6 10.3966 1.7012 3.6872 22 8 11.8220 1.7966 3.6507 23 6 3.5780 -1.2019 0.0048 24 6 2.1968 -1.1984 0.0053 25 1 -0.3633 0.0042 1.0276 26 1 -0.3634 0.8879 -0.5175 27 1 -0.3633 -0.8920 -0.5102 28 1 1.6553 2.1327 0.0007 29 1 4.1164 2.1380 -0.0101 30 1 7.3583 -0.9083 -0.8570 31 1 5.8170 -1.2467 -1.6806 32 1 8.2405 -0.9034 -4.4324 33 1 8.2751 -0.4415 0.8524 34 1 8.1480 1.2271 0.2458 35 1 7.9349 2.0573 2.5722 36 1 8.0619 0.3890 3.1794 37 1 10.3114 0.1873 2.1566 38 1 10.1849 1.8556 1.5492 39 1 9.9717 2.6872 3.8750 40 1 10.0980 1.0191 4.4832 41 1 12.2153 2.1257 4.4705 42 1 4.1163 -2.1382 0.0094 43 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865040793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:19 Heat of formation + Delta-G solvation = -100.846387 kcal Electronic energy + Delta-G solvation = -23023.541503 eV Core-core repulsion = 19646.012515 eV Total energy + Delta-G solvation = -3377.528988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46758 -39.66878 -38.09650 -36.89431 -35.43204 -34.70066 -32.84644 -31.89105 -30.41979 -29.33081 -27.24906 -25.30991 -24.70105 -23.54650 -22.60061 -21.88125 -20.20114 -18.73034 -18.40360 -18.04848 -17.57117 -17.09259 -16.50263 -16.39660 -16.23676 -15.68333 -15.47464 -14.81712 -14.59167 -14.54780 -14.39173 -14.31384 -14.16015 -13.56476 -13.15164 -13.00682 -12.97606 -12.79810 -12.75771 -12.63151 -12.55762 -12.45618 -12.10878 -12.04277 -11.83867 -11.75454 -11.67734 -10.86976 -10.86034 -10.60564 -10.01573 -9.86653 -9.12425 -8.23699 -6.38499 0.35497 0.47813 1.40409 1.40705 1.48544 1.65724 2.18698 2.39931 2.80804 3.06748 3.30018 3.81223 3.94056 3.97073 4.05163 4.06539 4.08684 4.33031 4.44704 4.47935 4.48562 4.51862 4.57328 4.72643 4.82312 4.83223 4.85350 4.91025 4.93883 5.03347 5.09907 5.15249 5.20442 5.27838 5.38208 5.39988 5.55679 5.66964 5.67535 5.81162 6.00077 6.16601 6.46382 6.72847 6.92687 7.23997 7.35584 8.81871 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009487 B = 0.005341 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.768650 B = 5241.251914 C = 7508.259878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.099 4.099 3 C -0.114 4.114 4 C -0.127 4.127 5 C 0.129 3.871 6 N -0.565 5.565 7 C 0.256 3.744 8 C -0.546 4.546 9 H 0.051 0.949 10 C 0.025 3.975 11 N -0.918 5.918 12 Si 0.955 3.045 13 H -0.268 1.268 14 H -0.279 1.279 15 H -0.275 1.275 16 C 0.515 3.485 17 O -0.582 6.582 18 C -0.127 4.127 19 C -0.086 4.086 20 C -0.118 4.118 21 C 0.078 3.922 22 O -0.596 6.596 23 C -0.138 4.138 24 C -0.111 4.111 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.102 0.898 30 H 0.039 0.961 31 H 0.017 0.983 32 H 0.269 0.731 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.398 0.602 42 H 0.120 0.880 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 2.068 10.105 11.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.147 4.147 5 C 0.039 3.961 6 N -0.292 5.292 7 C 0.137 3.863 8 C -0.584 4.584 9 H 0.069 0.931 10 C -0.176 4.176 11 N -0.557 5.557 12 Si 0.780 3.220 13 H -0.193 1.193 14 H -0.204 1.204 15 H -0.200 1.200 16 C 0.306 3.694 17 O -0.464 6.464 18 C -0.166 4.166 19 C -0.124 4.124 20 C -0.156 4.156 21 C 0.001 3.999 22 O -0.405 6.405 23 C -0.158 4.158 24 C -0.129 4.129 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.164 0.836 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.247 0.753 42 H 0.138 0.862 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.353 1.885 9.869 11.384 hybrid contribution 0.684 0.724 -0.526 1.127 sum -4.669 2.609 9.343 10.765 Atomic orbital electron populations 1.20795 0.88134 1.03902 1.03276 1.20320 0.98106 0.92266 0.99233 1.21158 0.92385 0.99322 1.00410 1.21267 0.95594 0.96642 1.01192 1.17957 0.83319 0.94230 1.00634 1.45940 1.04064 1.62340 1.16812 1.19187 0.91366 0.94392 0.81398 1.21535 1.36978 0.95196 1.04688 0.93109 1.25616 0.94884 0.98126 0.98975 1.69995 1.38338 1.22087 1.25278 0.85652 0.78381 0.79574 0.78402 1.19312 1.20386 1.20041 1.21182 0.91425 0.75324 0.81453 1.90582 1.71611 1.51520 1.32648 1.21606 0.89858 1.04439 1.00734 1.21112 0.94272 1.01725 0.95277 1.21475 0.94159 1.02207 0.97774 1.22153 0.80506 1.00148 0.97091 1.86435 1.20776 1.89777 1.43474 1.21362 0.95684 0.96710 1.02032 1.21189 0.92423 0.99232 1.00045 0.90010 0.90538 0.90211 0.83623 0.87940 0.94342 0.96480 0.92175 0.88528 0.88691 0.91810 0.91304 0.91400 0.91905 0.92669 0.92331 0.75263 0.86217 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 10.01 71.24 0.71 -1.18 16 2 C -0.10 -2.75 5.88 -19.85 -0.12 -2.86 16 3 C -0.11 -3.61 9.69 22.25 0.22 -3.39 16 4 C -0.13 -5.07 9.55 22.39 0.21 -4.86 16 5 C 0.13 5.53 4.75 38.16 0.18 5.71 16 6 N -0.56 -25.58 2.51 -635.30 -1.59 -27.17 16 7 C 0.26 12.70 4.88 85.63 0.42 13.12 16 8 C -0.55 -29.00 9.16 25.60 0.23 -28.77 16 9 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 10 C 0.02 1.31 5.46 84.65 0.46 1.78 16 11 N -0.92 -50.96 13.29 21.45 0.28 -50.67 16 12 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 16 C 0.51 22.30 7.53 87.66 0.66 22.96 16 17 O -0.58 -26.98 15.74 -3.05 -0.05 -27.03 16 18 C -0.13 -4.67 4.36 29.85 0.13 -4.54 16 19 C -0.09 -2.60 4.50 30.60 0.14 -2.46 16 20 C -0.12 -3.18 5.58 30.60 0.17 -3.01 16 21 C 0.08 1.71 7.05 71.98 0.51 2.22 16 22 O -0.60 -13.21 13.66 -148.98 -2.03 -15.24 16 23 C -0.14 -5.17 9.69 22.39 0.22 -4.96 16 24 C -0.11 -3.30 9.69 22.25 0.22 -3.08 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 27 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 28 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 29 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 30 H 0.04 1.92 6.47 -2.39 -0.02 1.91 16 31 H 0.02 0.91 7.86 -2.39 -0.02 0.89 16 32 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 33 H 0.10 3.43 7.26 -2.38 -0.02 3.42 16 34 H 0.09 3.72 7.91 -2.39 -0.02 3.70 16 35 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 36 H 0.07 2.05 8.10 -2.39 -0.02 2.03 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.40 4.60 9.12 -74.05 -0.68 3.93 16 42 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 43 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -66.98 363.89 3.31 -63.67 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.31 Total: 25.45 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 4.36 Total: -13.32 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.31 Total: -77.85 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -2.08 Total: -42.27 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -66.98 3.31 -63.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865040793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.173 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds