Wall clock time and date at job start Tue Mar 31 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99755 * 2 1 4 4 C 1.38749 * 120.05761 * 0.02801 * 3 2 1 5 5 C 1.38126 * 119.94135 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05768 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94343 * 180.28012 * 6 5 4 8 8 H 1.08996 * 109.46881 * 159.72867 * 7 6 5 9 9 C 1.53006 * 109.46786 * 279.72354 * 7 6 5 10 10 N 1.46498 * 109.46949 * 39.72399 * 7 6 5 11 11 C 1.34780 * 119.99550 * 155.00365 * 10 7 6 12 12 O 1.21278 * 120.00173 * 359.97438 * 11 10 7 13 13 C 1.50703 * 119.99704 * 179.97438 * 11 10 7 14 14 H 1.08998 * 109.47095 * 299.99813 * 13 11 10 15 15 C 1.52999 * 109.46971 * 60.00011 * 13 11 10 16 16 C 1.50703 * 109.46890 * 179.97438 * 13 11 10 17 17 H 1.08000 * 120.00239 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99760 * 179.97438 * 16 13 11 19 19 N 1.31512 * 120.00158 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99717 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47511 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47366 * 120.00319 * 20 18 16 23 23 H 1.48504 * 109.47028 * 239.99849 * 20 18 16 24 24 C 1.38245 * 120.10982 * 0.02562 * 6 5 4 25 25 C 1.38165 * 120.05645 * 359.97438 * 24 6 5 26 26 C 1.50695 * 120.02630 * 180.02562 * 25 24 6 27 27 H 1.08993 * 109.47273 * 59.99547 * 1 2 3 28 28 H 1.08998 * 109.46969 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46792 * 299.99749 * 1 2 3 30 30 H 1.07998 * 120.02737 * 359.95555 * 4 3 2 31 31 H 1.08005 * 119.97091 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.46991 * 60.00581 * 9 7 6 33 33 H 1.09002 * 109.46904 * 180.02562 * 9 7 6 34 34 H 1.08991 * 109.47339 * 299.99813 * 9 7 6 35 35 H 0.96990 * 120.00343 * 334.99531 * 10 7 6 36 36 H 1.09005 * 109.47092 * 179.97438 * 15 13 11 37 37 H 1.09003 * 109.46866 * 299.99343 * 15 13 11 38 38 H 1.08998 * 109.47372 * 59.99971 * 15 13 11 39 39 H 0.96999 * 119.99739 * 179.97438 * 19 18 16 40 40 H 1.07997 * 119.96957 * 179.97438 * 24 6 5 41 41 H 1.09001 * 109.47264 * 89.99741 * 26 25 24 42 42 H 1.08999 * 109.47272 * 209.99921 * 26 25 24 43 43 H 1.09003 * 109.47393 * 329.99830 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6758 0.0005 7 6 3.9862 5.0185 0.0075 8 1 5.0103 4.9026 0.3622 9 6 3.9996 5.5914 -1.4112 10 7 3.2619 5.9309 0.8958 11 6 3.9043 6.9723 1.4612 12 8 5.0819 7.1536 1.2349 13 6 3.1591 7.9112 2.3745 14 1 2.3375 8.3740 1.8279 15 6 2.6026 7.1292 3.5660 16 6 4.0984 8.9803 2.8705 17 1 5.1314 8.9801 2.5555 18 6 3.6386 9.9593 3.7256 19 7 2.3805 9.9599 4.1088 20 14 4.8027 11.2849 4.3398 21 1 6.1538 11.0622 3.7653 22 1 4.3004 12.6179 3.9203 23 1 4.8790 11.2287 5.8218 24 6 4.0560 2.5171 -0.0011 25 6 3.4311 1.2848 -0.0017 26 6 4.2537 0.0222 -0.0029 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3203 0.0003 31 1 1.3340 4.5114 0.0020 32 1 2.9755 5.7073 -1.7659 33 1 4.4948 6.5624 -1.4063 34 1 4.5384 4.9125 -2.0721 35 1 2.3202 5.7858 1.0770 36 1 2.0640 7.8084 4.2269 37 1 1.9233 6.3557 3.2075 38 1 3.4243 6.6664 4.1126 39 1 2.0572 10.6484 4.7107 40 1 5.1344 2.5752 -0.0020 41 1 4.4526 -0.2829 1.0245 42 1 3.7062 -0.7677 -0.5170 43 1 5.1975 0.2038 -0.5171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887318664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:52 Heat of formation + Delta-G solvation = -65.319979 kcal Electronic energy + Delta-G solvation = -23089.660785 eV Core-core repulsion = 19713.672338 eV Total energy + Delta-G solvation = -3375.988447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50935 -39.05449 -37.70790 -34.95597 -33.68969 -32.66980 -31.35024 -30.02327 -28.78035 -27.76780 -26.71934 -25.10169 -23.80792 -22.30335 -22.16331 -20.09168 -19.31588 -18.11515 -16.58587 -16.51688 -16.07198 -15.98132 -15.14424 -14.86408 -14.53157 -14.22846 -14.01655 -13.87276 -13.65799 -13.20556 -13.11364 -12.92041 -12.61479 -12.32733 -12.24264 -12.06230 -11.97666 -11.68699 -11.44856 -11.07520 -10.99574 -10.91236 -10.77240 -10.67819 -10.61142 -10.21448 -9.93024 -8.93158 -8.91760 -8.60710 -8.42711 -8.30700 -8.08877 -6.00581 -4.03269 1.22684 1.29935 3.08421 3.34045 3.41486 3.49835 3.57535 3.79418 4.00170 4.50327 4.61276 4.65822 4.72227 4.86398 4.89936 5.16819 5.19247 5.24621 5.32747 5.39833 5.44671 5.54033 5.57003 5.59048 5.76099 5.83683 6.02928 6.08890 6.21776 6.22560 6.34366 6.41525 6.58703 6.65822 6.66869 6.86851 6.96789 7.17030 7.22109 7.51309 7.78927 8.02592 8.18822 8.49416 9.06413 9.29467 9.62343 11.07145 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.003274 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.609053 B = 8551.017928 C = 9016.207288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.119 3.881 4 C -0.199 4.199 5 C -0.078 4.078 6 C -0.112 4.112 7 C 0.184 3.816 8 H 0.090 0.910 9 C -0.155 4.155 10 N -0.741 5.741 11 C 0.521 3.479 12 O -0.546 6.546 13 C 0.029 3.971 14 H 0.051 0.949 15 C -0.132 4.132 16 C -0.498 4.498 17 H 0.075 0.925 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.073 4.073 25 C -0.115 4.115 26 C -0.103 4.103 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.394 0.606 36 H 0.092 0.908 37 H 0.011 0.989 38 H 0.031 0.969 39 H 0.259 0.741 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -19.580 -9.606 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.074 3.926 4 C -0.218 4.218 5 C -0.096 4.096 6 C -0.113 4.113 7 C 0.079 3.921 8 H 0.108 0.892 9 C -0.214 4.214 10 N -0.396 5.396 11 C 0.311 3.689 12 O -0.422 6.422 13 C 0.008 3.992 14 H 0.069 0.931 15 C -0.190 4.190 16 C -0.537 4.537 17 H 0.093 0.907 18 C -0.143 4.143 19 N -0.537 5.537 20 Si 0.727 3.273 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.092 4.092 25 C -0.116 4.116 26 C -0.160 4.160 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.228 0.772 36 H 0.111 0.889 37 H 0.030 0.970 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.148 0.852 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.043 -19.515 -9.652 22.144 hybrid contribution -0.371 0.812 0.466 1.007 sum -4.413 -18.703 -9.185 21.299 Atomic orbital electron populations 1.23040 0.78584 1.03741 1.01433 1.86039 1.21150 1.26957 1.88885 1.18809 0.91779 0.84116 0.97880 1.21169 0.99908 0.92166 1.08577 1.20744 0.94007 0.97118 0.97745 1.19957 0.93743 0.94959 1.02639 1.19595 0.96558 0.85187 0.90799 0.89173 1.22154 1.01944 1.01775 0.95502 1.46461 1.13744 1.29527 1.49837 1.21959 0.87871 0.80045 0.79048 1.90521 1.16926 1.72784 1.61923 1.18877 0.96233 0.92238 0.91897 0.93082 1.21735 0.98924 0.98090 1.00219 1.21201 0.97053 1.08427 1.27006 0.90710 1.24953 0.95254 0.97903 0.96207 1.69881 1.14198 1.34526 1.35101 0.86413 0.81346 0.81253 0.78336 1.19550 1.21094 1.21082 1.20756 0.99888 0.90305 0.98231 1.19207 0.90585 0.96035 1.05766 1.20592 0.98705 0.94426 1.02286 0.92730 0.88408 0.92586 0.85438 0.85647 0.92664 0.91502 0.92229 0.77159 0.88897 0.97006 0.95021 0.93076 0.85159 0.91425 0.91342 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.34 9.54 -19.43 -0.19 -3.53 16 3 C 0.12 1.39 6.66 -39.22 -0.26 1.13 16 4 C -0.20 -2.21 9.04 -39.43 -0.36 -2.57 16 5 C -0.08 -0.94 9.05 -39.60 -0.36 -1.30 16 6 C -0.11 -1.48 4.96 -104.60 -0.52 -1.99 16 7 C 0.18 2.81 2.78 -69.08 -0.19 2.62 16 8 H 0.09 1.53 7.44 -51.93 -0.39 1.14 16 9 C -0.16 -2.18 9.46 37.16 0.35 -1.82 16 10 N -0.74 -13.09 4.92 -54.93 -0.27 -13.36 16 11 C 0.52 11.93 7.11 -10.98 -0.08 11.85 16 12 O -0.55 -14.21 15.12 5.56 0.08 -14.13 16 13 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 14 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 16 C -0.50 -14.27 8.37 -34.44 -0.29 -14.56 16 17 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 19 N -0.90 -25.36 11.32 55.43 0.63 -24.73 16 20 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 24 C -0.07 -0.89 9.32 -39.61 -0.37 -1.26 16 25 C -0.12 -1.35 5.89 -104.48 -0.62 -1.96 16 26 C -0.10 -0.98 9.79 36.00 0.35 -0.62 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.13 1.13 6.30 -52.49 -0.33 0.79 16 31 H 0.13 1.38 6.90 -52.48 -0.36 1.02 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.39 6.16 6.27 -40.82 -0.26 5.90 16 36 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 37 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 40 H 0.13 1.40 8.03 -52.49 -0.42 0.98 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 43 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -32.22 352.39 -7.33 -39.55 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.52 Total: 4.00 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.35 Total: -10.08 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.36 Total: -38.09 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.10 Total: -17.65 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.22 -7.33 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887318664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.770 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds