Wall clock time and date at job start Tue Mar 31 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99755 * 2 1 4 4 C 1.38749 * 120.05761 * 0.02801 * 3 2 1 5 5 C 1.38126 * 119.94135 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05768 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94343 * 180.28012 * 6 5 4 8 8 H 1.08996 * 109.46881 * 159.72867 * 7 6 5 9 9 C 1.53006 * 109.46786 * 279.72354 * 7 6 5 10 10 N 1.46498 * 109.46949 * 39.72399 * 7 6 5 11 11 C 1.34780 * 119.99550 * 155.00365 * 10 7 6 12 12 O 1.21278 * 120.00173 * 359.97438 * 11 10 7 13 13 C 1.50703 * 119.99704 * 179.97438 * 11 10 7 14 14 H 1.08998 * 109.47095 * 299.99813 * 13 11 10 15 15 C 1.52999 * 109.46971 * 60.00011 * 13 11 10 16 16 C 1.50703 * 109.46890 * 179.97438 * 13 11 10 17 17 H 1.08000 * 120.00239 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99760 * 179.97438 * 16 13 11 19 19 N 1.31512 * 120.00158 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99717 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47511 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47366 * 120.00319 * 20 18 16 23 23 H 1.48504 * 109.47028 * 239.99849 * 20 18 16 24 24 C 1.38245 * 120.10982 * 0.02562 * 6 5 4 25 25 C 1.38165 * 120.05645 * 359.97438 * 24 6 5 26 26 C 1.50695 * 120.02630 * 180.02562 * 25 24 6 27 27 H 1.08993 * 109.47273 * 59.99547 * 1 2 3 28 28 H 1.08998 * 109.46969 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46792 * 299.99749 * 1 2 3 30 30 H 1.07998 * 120.02737 * 359.95555 * 4 3 2 31 31 H 1.08005 * 119.97091 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.46991 * 60.00581 * 9 7 6 33 33 H 1.09002 * 109.46904 * 180.02562 * 9 7 6 34 34 H 1.08991 * 109.47339 * 299.99813 * 9 7 6 35 35 H 0.96990 * 120.00343 * 334.99531 * 10 7 6 36 36 H 1.09005 * 109.47092 * 179.97438 * 15 13 11 37 37 H 1.09003 * 109.46866 * 299.99343 * 15 13 11 38 38 H 1.08998 * 109.47372 * 59.99971 * 15 13 11 39 39 H 0.96999 * 119.99739 * 179.97438 * 19 18 16 40 40 H 1.07997 * 119.96957 * 179.97438 * 24 6 5 41 41 H 1.09001 * 109.47264 * 89.99741 * 26 25 24 42 42 H 1.08999 * 109.47272 * 209.99921 * 26 25 24 43 43 H 1.09003 * 109.47393 * 329.99830 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6758 0.0005 7 6 3.9862 5.0185 0.0075 8 1 5.0103 4.9026 0.3622 9 6 3.9996 5.5914 -1.4112 10 7 3.2619 5.9309 0.8958 11 6 3.9043 6.9723 1.4612 12 8 5.0819 7.1536 1.2349 13 6 3.1591 7.9112 2.3745 14 1 2.3375 8.3740 1.8279 15 6 2.6026 7.1292 3.5660 16 6 4.0984 8.9803 2.8705 17 1 5.1314 8.9801 2.5555 18 6 3.6386 9.9593 3.7256 19 7 2.3805 9.9599 4.1088 20 14 4.8027 11.2849 4.3398 21 1 6.1538 11.0622 3.7653 22 1 4.3004 12.6179 3.9203 23 1 4.8790 11.2287 5.8218 24 6 4.0560 2.5171 -0.0011 25 6 3.4311 1.2848 -0.0017 26 6 4.2537 0.0222 -0.0029 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3203 0.0003 31 1 1.3340 4.5114 0.0020 32 1 2.9755 5.7073 -1.7659 33 1 4.4948 6.5624 -1.4063 34 1 4.5384 4.9125 -2.0721 35 1 2.3202 5.7858 1.0770 36 1 2.0640 7.8084 4.2269 37 1 1.9233 6.3557 3.2075 38 1 3.4243 6.6664 4.1126 39 1 2.0572 10.6484 4.7107 40 1 5.1344 2.5752 -0.0020 41 1 4.4526 -0.2829 1.0245 42 1 3.7062 -0.7677 -0.5170 43 1 5.1975 0.2038 -0.5171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887318664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:52 Heat of formation + Delta-G solvation = -84.729750 kcal Electronic energy + Delta-G solvation = -23090.502456 eV Core-core repulsion = 19713.672338 eV Total energy + Delta-G solvation = -3376.830118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43889 -40.56564 -38.76862 -36.28143 -35.72842 -33.62095 -32.99066 -31.58638 -29.87589 -28.41672 -27.54130 -27.19390 -25.22714 -23.81019 -23.04981 -21.33296 -20.89376 -18.92587 -18.36195 -17.98646 -17.49963 -16.67613 -16.57685 -16.48803 -15.89043 -15.64255 -15.22809 -14.93718 -14.66111 -14.56315 -14.36538 -14.11300 -13.95943 -13.58357 -13.39007 -13.11865 -12.97439 -12.92622 -12.74412 -12.65178 -12.60976 -12.58421 -12.18955 -12.04007 -11.90261 -11.85317 -11.69556 -11.02472 -10.59885 -10.29275 -10.00195 -9.77810 -9.00755 -8.14638 -6.24693 0.34733 0.37225 1.39510 1.41513 1.55136 1.96151 2.34869 2.39450 2.51924 2.77043 3.14962 3.61983 3.79750 3.88822 4.22196 4.23629 4.32215 4.36965 4.42588 4.45805 4.48309 4.63698 4.67241 4.74677 4.77168 4.80520 4.84983 4.89615 4.94954 4.99215 5.04290 5.19811 5.30152 5.34474 5.41687 5.50168 5.52361 5.72063 5.78185 5.80218 5.95043 6.22173 6.44532 6.75130 6.87641 7.41055 7.56873 8.91439 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.003274 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.609053 B = 8551.017928 C = 9016.207288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.115 3.885 4 C -0.200 4.200 5 C -0.084 4.084 6 C -0.125 4.125 7 C 0.185 3.815 8 H 0.071 0.929 9 C -0.149 4.149 10 N -0.720 5.720 11 C 0.523 3.477 12 O -0.585 6.585 13 C 0.024 3.976 14 H 0.042 0.958 15 C -0.118 4.118 16 C -0.528 4.528 17 H 0.048 0.952 18 C 0.019 3.981 19 N -0.911 5.911 20 Si 0.955 3.045 21 H -0.280 1.280 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.079 4.079 25 C -0.127 4.127 26 C -0.101 4.101 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.151 0.849 31 H 0.135 0.865 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.406 0.594 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.021 0.979 39 H 0.264 0.736 40 H 0.138 0.862 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 -21.015 -9.947 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.069 3.931 4 C -0.218 4.218 5 C -0.102 4.102 6 C -0.126 4.126 7 C 0.081 3.919 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.374 5.374 11 C 0.313 3.687 12 O -0.464 6.464 13 C 0.003 3.997 14 H 0.060 0.940 15 C -0.177 4.177 16 C -0.566 4.566 17 H 0.067 0.933 18 C -0.180 4.180 19 N -0.551 5.551 20 Si 0.781 3.219 21 H -0.205 1.205 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.098 4.098 25 C -0.127 4.127 26 C -0.158 4.158 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.169 0.831 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.156 0.844 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.322 -20.989 -10.004 23.852 hybrid contribution -0.074 1.143 0.538 1.265 sum -5.397 -19.846 -9.467 22.640 Atomic orbital electron populations 1.23335 0.76664 1.05517 1.02166 1.86033 1.23158 1.26416 1.88582 1.19013 0.92046 0.84809 0.97198 1.21400 1.01135 0.91503 1.07763 1.20876 0.93567 0.98038 0.97703 1.19739 0.94304 0.93704 1.04828 1.19654 0.95541 0.86025 0.90664 0.91124 1.22089 1.02793 1.00706 0.95133 1.46199 1.14206 1.28157 1.48851 1.21510 0.87191 0.80936 0.79106 1.90500 1.18441 1.74072 1.63404 1.18811 0.95503 0.92479 0.92935 0.94040 1.21547 0.98862 0.98256 0.98986 1.21329 0.96598 1.10486 1.28186 0.93338 1.25594 0.96760 0.99522 0.96106 1.69953 1.15025 1.35041 1.35057 0.85550 0.79054 0.79148 0.78171 1.20457 1.19945 1.19953 1.20878 1.00412 0.90307 0.98170 1.19481 0.91211 0.96530 1.05508 1.20612 0.98993 0.93508 1.02662 0.91718 0.86291 0.92039 0.83149 0.84749 0.91311 0.94237 0.89996 0.75723 0.91031 0.93207 0.96023 0.92624 0.84403 0.91144 0.91125 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.15 9.54 -92.44 -0.88 -7.03 16 3 C 0.11 2.44 6.66 22.51 0.15 2.59 16 4 C -0.20 -3.92 9.04 22.37 0.20 -3.72 16 5 C -0.08 -1.84 9.05 22.26 0.20 -1.64 16 6 C -0.12 -3.12 4.96 -19.85 -0.10 -3.22 16 7 C 0.19 5.60 2.78 44.25 0.12 5.72 16 8 H 0.07 2.43 7.44 -2.39 -0.02 2.41 16 9 C -0.15 -4.08 9.46 71.98 0.68 -3.40 16 10 N -0.72 -25.14 4.92 -446.09 -2.19 -27.33 16 11 C 0.52 24.36 7.11 87.66 0.62 24.99 16 12 O -0.58 -31.49 15.12 -3.02 -0.05 -31.53 16 13 C 0.02 1.22 2.64 -12.28 -0.03 1.18 16 14 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.12 -5.49 8.87 71.98 0.64 -4.86 16 16 C -0.53 -30.96 8.37 25.60 0.21 -30.75 16 17 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 18 C 0.02 1.08 5.30 84.66 0.45 1.53 16 19 N -0.91 -51.47 11.32 21.45 0.24 -51.22 16 20 Si 0.95 45.36 29.54 68.60 2.03 47.39 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 24 C -0.08 -1.83 9.32 22.25 0.21 -1.63 16 25 C -0.13 -2.75 5.89 -19.77 -0.12 -2.87 16 26 C -0.10 -1.74 9.79 71.23 0.70 -1.04 16 27 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 28 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 30 H 0.15 2.17 6.30 -2.91 -0.02 2.15 16 31 H 0.13 2.64 6.90 -2.91 -0.02 2.62 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.41 12.12 6.27 -92.72 -0.58 11.53 16 36 H 0.07 3.65 6.07 -2.38 -0.01 3.63 16 37 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 38 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 40 H 0.14 2.85 8.03 -2.91 -0.02 2.83 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.17 7.53 -2.39 -0.02 1.16 16 43 H 0.08 1.11 8.09 -2.39 -0.02 1.10 16 Total: -1.00 -70.00 352.39 4.63 -65.38 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.43 Total: 20.15 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 5.05 Total: -15.81 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -1.95 Total: -78.55 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.93 Total: -38.56 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -70.00 4.63 -65.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887318664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.351 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds