Wall clock time and date at job start Tue Mar 31 2020 06:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 117.00065 * 2 1 4 4 C 1.38756 * 120.05258 * 0.02989 * 3 2 1 5 5 C 1.38123 * 119.94169 * 179.68395 * 4 3 2 6 6 C 1.38285 * 120.05690 * 0.55746 * 5 4 3 7 7 C 1.50695 * 119.94761 * 179.72898 * 6 5 4 8 8 H 1.08998 * 109.47383 * 159.73048 * 7 6 5 9 9 C 1.52998 * 109.47294 * 279.72984 * 7 6 5 10 10 N 1.46500 * 109.47020 * 39.72791 * 7 6 5 11 11 C 1.34777 * 120.00084 * 154.99640 * 10 7 6 12 12 O 1.21283 * 119.99665 * 0.02562 * 11 10 7 13 13 C 1.50697 * 120.00075 * 180.02562 * 11 10 7 14 14 H 1.08998 * 109.46862 * 60.01098 * 13 11 10 15 15 C 1.52997 * 109.47466 * 300.00543 * 13 11 10 16 16 C 1.50706 * 109.47178 * 180.02562 * 13 11 10 17 17 H 1.07998 * 119.99629 * 0.02562 * 16 13 11 18 18 C 1.37875 * 119.99955 * 179.97438 * 16 13 11 19 19 N 1.31510 * 120.00308 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46848 * 60.00326 * 20 18 16 22 22 H 1.48500 * 109.47035 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47237 * 300.00475 * 20 18 16 24 24 C 1.38252 * 120.10877 * 359.46374 * 6 5 4 25 25 C 1.38161 * 120.05606 * 0.23859 * 24 6 5 26 26 C 1.50697 * 120.02977 * 180.02562 * 25 24 6 27 27 H 1.09001 * 109.47184 * 59.99879 * 1 2 3 28 28 H 1.08999 * 109.47126 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47047 * 299.99475 * 1 2 3 30 30 H 1.08004 * 120.03005 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.97181 * 180.31626 * 5 4 3 32 32 H 1.09006 * 109.46812 * 60.00092 * 9 7 6 33 33 H 1.09000 * 109.47638 * 179.97438 * 9 7 6 34 34 H 1.08996 * 109.47394 * 300.00121 * 9 7 6 35 35 H 0.96996 * 120.00280 * 335.00773 * 10 7 6 36 36 H 1.09002 * 109.47153 * 59.99773 * 15 13 11 37 37 H 1.09001 * 109.46832 * 299.99964 * 15 13 11 38 38 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 39 39 H 0.96998 * 120.00365 * 179.97438 * 19 18 16 40 40 H 1.08003 * 119.96984 * 180.27247 * 24 6 5 41 41 H 1.08992 * 109.47536 * 90.00407 * 26 25 24 42 42 H 1.09005 * 109.47512 * 210.01103 * 26 25 24 43 43 H 1.09007 * 109.47206 * 330.00415 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9208 3.6048 0.0072 6 6 3.3018 3.6759 0.0016 7 6 3.9860 5.0186 0.0026 8 1 5.0114 4.9037 0.3539 9 6 3.9943 5.5879 -1.4175 10 7 3.2650 5.9333 0.8912 11 6 3.9093 6.9760 1.4517 12 8 5.0859 7.1572 1.2200 13 6 3.1677 7.9166 2.3662 14 1 2.7752 7.3611 3.2179 15 6 2.0108 8.5642 1.6025 16 6 4.1084 8.9878 2.8550 17 1 5.1399 8.9876 2.5351 18 6 3.6518 9.9685 3.7098 19 7 2.3956 9.9690 4.0990 20 14 4.8176 11.2966 4.3152 21 1 5.3519 12.0529 3.1542 22 1 4.0869 12.2235 5.2164 23 1 5.9409 10.6690 5.0565 24 6 4.0560 2.5171 0.0005 25 6 3.4311 1.2849 0.0001 26 6 4.2537 0.0222 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2127 2.3204 0.0007 31 1 1.3339 4.5114 0.0129 32 1 2.9688 5.7029 -1.7688 33 1 4.4887 6.5593 -1.4167 34 1 4.5307 4.9073 -2.0787 35 1 2.3239 5.7885 1.0763 36 1 1.3304 7.7897 1.2487 37 1 2.4035 9.1197 0.7509 38 1 1.4742 9.2442 2.2642 39 1 2.0745 10.6587 4.7007 40 1 5.1344 2.5753 0.0005 41 1 4.4521 -0.2827 1.0269 42 1 3.7064 -0.7678 -0.5148 43 1 5.1978 0.2038 -0.5144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887318665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:55 Heat of formation + Delta-G solvation = -65.261253 kcal Electronic energy + Delta-G solvation = -23062.494245 eV Core-core repulsion = 19686.508344 eV Total energy + Delta-G solvation = -3375.985901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51129 -39.05550 -37.70945 -34.95425 -33.69022 -32.67177 -31.34710 -30.02049 -28.79480 -27.76999 -26.72054 -25.10789 -23.77193 -22.33521 -22.16243 -20.10222 -19.30210 -18.11601 -16.60165 -16.50965 -16.05509 -15.98191 -15.16006 -14.85754 -14.54159 -14.22270 -14.02644 -13.87700 -13.66253 -13.23441 -13.02994 -12.93310 -12.59688 -12.36166 -12.25651 -12.09517 -11.99213 -11.63125 -11.44345 -11.06702 -10.98078 -10.91729 -10.77875 -10.69724 -10.63358 -10.22145 -9.92881 -8.95464 -8.92084 -8.58911 -8.45074 -8.29162 -8.09091 -6.00179 -4.03117 1.22445 1.29649 3.08197 3.38340 3.40476 3.46028 3.57414 3.78783 4.00549 4.50247 4.61089 4.65697 4.72190 4.86234 4.89795 5.16682 5.19085 5.24432 5.33027 5.39625 5.44524 5.53954 5.57100 5.59071 5.76017 5.83957 6.03228 6.08830 6.21691 6.22494 6.34265 6.42166 6.58271 6.64488 6.66677 6.85772 6.95919 7.17110 7.21875 7.51198 7.78607 8.02460 8.18786 8.49478 9.05725 9.29453 9.62358 11.07473 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026278 B = 0.003235 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.271634 B = 8654.284950 C = 9055.098202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.119 3.881 4 C -0.200 4.200 5 C -0.078 4.078 6 C -0.112 4.112 7 C 0.184 3.816 8 H 0.090 0.910 9 C -0.155 4.155 10 N -0.741 5.741 11 C 0.521 3.479 12 O -0.546 6.546 13 C 0.029 3.971 14 H 0.051 0.949 15 C -0.131 4.131 16 C -0.500 4.500 17 H 0.074 0.926 18 C 0.058 3.942 19 N -0.898 5.898 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C -0.073 4.073 25 C -0.115 4.115 26 C -0.103 4.103 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.394 0.606 36 H 0.010 0.990 37 H 0.031 0.969 38 H 0.093 0.907 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 -19.311 -9.902 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.074 3.926 4 C -0.218 4.218 5 C -0.096 4.096 6 C -0.113 4.113 7 C 0.079 3.921 8 H 0.108 0.892 9 C -0.213 4.213 10 N -0.396 5.396 11 C 0.311 3.689 12 O -0.422 6.422 13 C 0.008 3.992 14 H 0.069 0.931 15 C -0.189 4.189 16 C -0.539 4.539 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.537 5.537 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.092 4.092 25 C -0.116 4.116 26 C -0.160 4.160 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.228 0.772 36 H 0.029 0.971 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.149 0.851 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.227 -19.245 -9.944 22.071 hybrid contribution -0.345 0.816 0.435 0.987 sum -4.572 -18.429 -9.508 21.236 Atomic orbital electron populations 1.23039 0.78581 1.03743 1.01434 1.86039 1.21151 1.26956 1.88885 1.18812 0.91781 0.84116 0.97876 1.21172 0.99912 0.92164 1.08577 1.20746 0.94014 0.97128 0.97738 1.19959 0.93744 0.94959 1.02655 1.19595 0.96581 0.85139 0.90816 0.89169 1.22150 1.01953 1.01760 0.95478 1.46461 1.13835 1.29291 1.49983 1.21956 0.87714 0.79921 0.79316 1.90521 1.17004 1.72834 1.61825 1.18864 0.94466 0.93154 0.92720 0.93093 1.21736 0.97533 0.99937 0.99736 1.21118 0.96843 1.09029 1.26877 0.90822 1.24946 0.95277 0.97943 0.96082 1.69859 1.14312 1.34848 1.34712 0.86514 0.80796 0.81247 0.78618 1.20210 1.21416 1.20199 1.20759 0.99893 0.90300 0.98229 1.19206 0.90584 0.96037 1.05767 1.20593 0.98708 0.94424 1.02287 0.92727 0.88407 0.92588 0.85433 0.85634 0.92671 0.91509 0.92247 0.77158 0.97054 0.94995 0.88883 0.92953 0.85147 0.91423 0.91340 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.33 9.54 -19.44 -0.19 -3.52 16 3 C 0.12 1.39 6.66 -39.22 -0.26 1.13 16 4 C -0.20 -2.21 9.04 -39.43 -0.36 -2.57 16 5 C -0.08 -0.94 9.05 -39.61 -0.36 -1.30 16 6 C -0.11 -1.48 4.96 -104.60 -0.52 -1.99 16 7 C 0.18 2.82 2.78 -69.09 -0.19 2.62 16 8 H 0.09 1.52 7.44 -51.93 -0.39 1.14 16 9 C -0.15 -2.19 9.46 37.16 0.35 -1.84 16 10 N -0.74 -13.10 4.92 -54.94 -0.27 -13.37 16 11 C 0.52 11.94 7.11 -10.99 -0.08 11.86 16 12 O -0.55 -14.21 15.12 5.55 0.08 -14.13 16 13 C 0.03 0.73 2.64 -92.92 -0.25 0.48 16 14 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 15 C -0.13 -3.03 8.86 37.16 0.33 -2.70 16 16 C -0.50 -14.33 8.37 -34.44 -0.29 -14.62 16 17 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.90 -25.38 11.32 55.43 0.63 -24.76 16 20 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.07 -0.89 9.32 -39.60 -0.37 -1.26 16 25 C -0.12 -1.35 5.89 -104.48 -0.62 -1.96 16 26 C -0.10 -0.97 9.79 36.00 0.35 -0.62 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.13 1.12 6.30 -52.48 -0.33 0.79 16 31 H 0.13 1.39 6.89 -52.49 -0.36 1.03 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.39 6.17 6.27 -40.82 -0.26 5.91 16 36 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.13 1.40 8.03 -52.48 -0.42 0.97 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 43 H 0.06 0.53 8.09 -51.92 -0.42 0.11 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -32.15 352.37 -7.33 -39.48 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.52 Total: 4.04 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.35 Total: -10.05 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.36 Total: -38.12 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.10 Total: -17.65 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.15 -7.33 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887318665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.782 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds