Wall clock time and date at job start Tue Mar 31 2020 06:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 117.00065 * 2 1 4 4 C 1.38756 * 120.05258 * 0.02989 * 3 2 1 5 5 C 1.38123 * 119.94169 * 179.68395 * 4 3 2 6 6 C 1.38285 * 120.05690 * 0.55746 * 5 4 3 7 7 C 1.50695 * 119.94761 * 179.72898 * 6 5 4 8 8 H 1.08998 * 109.47383 * 159.73048 * 7 6 5 9 9 C 1.52998 * 109.47294 * 279.72984 * 7 6 5 10 10 N 1.46500 * 109.47020 * 39.72791 * 7 6 5 11 11 C 1.34777 * 120.00084 * 154.99640 * 10 7 6 12 12 O 1.21283 * 119.99665 * 0.02562 * 11 10 7 13 13 C 1.50697 * 120.00075 * 180.02562 * 11 10 7 14 14 H 1.08998 * 109.46862 * 60.01098 * 13 11 10 15 15 C 1.52997 * 109.47466 * 300.00543 * 13 11 10 16 16 C 1.50706 * 109.47178 * 180.02562 * 13 11 10 17 17 H 1.07998 * 119.99629 * 0.02562 * 16 13 11 18 18 C 1.37875 * 119.99955 * 179.97438 * 16 13 11 19 19 N 1.31510 * 120.00308 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46848 * 60.00326 * 20 18 16 22 22 H 1.48500 * 109.47035 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47237 * 300.00475 * 20 18 16 24 24 C 1.38252 * 120.10877 * 359.46374 * 6 5 4 25 25 C 1.38161 * 120.05606 * 0.23859 * 24 6 5 26 26 C 1.50697 * 120.02977 * 180.02562 * 25 24 6 27 27 H 1.09001 * 109.47184 * 59.99879 * 1 2 3 28 28 H 1.08999 * 109.47126 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47047 * 299.99475 * 1 2 3 30 30 H 1.08004 * 120.03005 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.97181 * 180.31626 * 5 4 3 32 32 H 1.09006 * 109.46812 * 60.00092 * 9 7 6 33 33 H 1.09000 * 109.47638 * 179.97438 * 9 7 6 34 34 H 1.08996 * 109.47394 * 300.00121 * 9 7 6 35 35 H 0.96996 * 120.00280 * 335.00773 * 10 7 6 36 36 H 1.09002 * 109.47153 * 59.99773 * 15 13 11 37 37 H 1.09001 * 109.46832 * 299.99964 * 15 13 11 38 38 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 39 39 H 0.96998 * 120.00365 * 179.97438 * 19 18 16 40 40 H 1.08003 * 119.96984 * 180.27247 * 24 6 5 41 41 H 1.08992 * 109.47536 * 90.00407 * 26 25 24 42 42 H 1.09005 * 109.47512 * 210.01103 * 26 25 24 43 43 H 1.09007 * 109.47206 * 330.00415 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9208 3.6048 0.0072 6 6 3.3018 3.6759 0.0016 7 6 3.9860 5.0186 0.0026 8 1 5.0114 4.9037 0.3539 9 6 3.9943 5.5879 -1.4175 10 7 3.2650 5.9333 0.8912 11 6 3.9093 6.9760 1.4517 12 8 5.0859 7.1572 1.2200 13 6 3.1677 7.9166 2.3662 14 1 2.7752 7.3611 3.2179 15 6 2.0108 8.5642 1.6025 16 6 4.1084 8.9878 2.8550 17 1 5.1399 8.9876 2.5351 18 6 3.6518 9.9685 3.7098 19 7 2.3956 9.9690 4.0990 20 14 4.8176 11.2966 4.3152 21 1 5.3519 12.0529 3.1542 22 1 4.0869 12.2235 5.2164 23 1 5.9409 10.6690 5.0565 24 6 4.0560 2.5171 0.0005 25 6 3.4311 1.2849 0.0001 26 6 4.2537 0.0222 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2127 2.3204 0.0007 31 1 1.3339 4.5114 0.0129 32 1 2.9688 5.7029 -1.7688 33 1 4.4887 6.5593 -1.4167 34 1 4.5307 4.9073 -2.0787 35 1 2.3239 5.7885 1.0763 36 1 1.3304 7.7897 1.2487 37 1 2.4035 9.1197 0.7509 38 1 1.4742 9.2442 2.2642 39 1 2.0745 10.6587 4.7007 40 1 5.1344 2.5753 0.0005 41 1 4.4521 -0.2827 1.0269 42 1 3.7064 -0.7678 -0.5148 43 1 5.1978 0.2038 -0.5144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887318665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:55 Heat of formation + Delta-G solvation = -84.629198 kcal Electronic energy + Delta-G solvation = -23063.334102 eV Core-core repulsion = 19686.508344 eV Total energy + Delta-G solvation = -3376.825758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.44032 -40.56585 -38.76957 -36.27889 -35.72656 -33.62282 -32.98331 -31.58743 -29.88497 -28.41839 -27.54369 -27.18982 -25.18107 -23.85030 -23.04883 -21.33581 -20.88231 -18.92701 -18.37697 -17.97267 -17.47944 -16.67771 -16.59192 -16.48803 -15.88928 -15.69496 -15.15049 -14.96295 -14.64615 -14.54855 -14.36839 -14.09309 -14.00806 -13.63597 -13.31170 -13.09375 -12.97428 -12.92076 -12.77450 -12.70726 -12.60241 -12.53615 -12.19427 -12.01700 -11.89909 -11.85659 -11.69820 -11.03978 -10.59291 -10.29163 -10.00352 -9.78036 -9.01015 -8.14221 -6.24595 0.34515 0.36962 1.41414 1.43004 1.51530 1.96205 2.34611 2.39257 2.51918 2.76937 3.15296 3.61985 3.79549 3.88625 4.22225 4.23315 4.32277 4.36602 4.42463 4.46532 4.48155 4.63566 4.67343 4.75765 4.77079 4.80679 4.84852 4.89699 4.95726 4.98830 5.05193 5.20104 5.30037 5.34301 5.41590 5.51024 5.51844 5.72428 5.78133 5.79989 5.95895 6.22729 6.44317 6.74841 6.87448 7.40983 7.56854 8.91445 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026278 B = 0.003235 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.271634 B = 8654.284950 C = 9055.098202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.115 3.885 4 C -0.200 4.200 5 C -0.084 4.084 6 C -0.125 4.125 7 C 0.186 3.814 8 H 0.071 0.929 9 C -0.148 4.148 10 N -0.720 5.720 11 C 0.523 3.477 12 O -0.585 6.585 13 C 0.024 3.976 14 H 0.039 0.961 15 C -0.118 4.118 16 C -0.530 4.530 17 H 0.049 0.951 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.955 3.045 21 H -0.276 1.276 22 H -0.274 1.274 23 H -0.277 1.277 24 C -0.079 4.079 25 C -0.127 4.127 26 C -0.101 4.101 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.151 0.849 31 H 0.135 0.865 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.406 0.594 36 H 0.051 0.949 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.265 0.735 40 H 0.138 0.862 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 -20.612 -10.499 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.069 3.931 4 C -0.218 4.218 5 C -0.102 4.102 6 C -0.126 4.126 7 C 0.081 3.919 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.374 5.374 11 C 0.313 3.687 12 O -0.464 6.464 13 C 0.003 3.997 14 H 0.056 0.944 15 C -0.176 4.176 16 C -0.568 4.568 17 H 0.067 0.933 18 C -0.179 4.179 19 N -0.551 5.551 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.199 1.199 23 H -0.202 1.202 24 C -0.098 4.098 25 C -0.127 4.127 26 C -0.158 4.158 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.169 0.831 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.243 0.757 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.156 0.844 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.535 -20.585 -10.554 23.786 hybrid contribution -0.031 1.085 0.610 1.245 sum -5.566 -19.500 -9.944 22.586 Atomic orbital electron populations 1.23334 0.76661 1.05520 1.02167 1.86033 1.23161 1.26414 1.88583 1.19016 0.92050 0.84812 0.97199 1.21405 1.01142 0.91504 1.07760 1.20880 0.93576 0.98056 0.97694 1.19744 0.94310 0.93717 1.04839 1.19655 0.95569 0.85964 0.90689 0.91126 1.22082 1.02805 1.00686 0.95083 1.46199 1.14300 1.27909 1.49006 1.21507 0.87045 0.80801 0.79383 1.90499 1.18469 1.74100 1.63352 1.18803 0.94746 0.93037 0.93148 0.94370 1.21548 0.97116 1.00421 0.98564 1.21280 0.96520 1.10926 1.28123 0.93298 1.25590 0.96785 0.99569 0.95990 1.69938 1.15149 1.35334 1.34641 0.85663 0.79080 0.78986 0.78217 1.20127 1.19914 1.20224 1.20883 1.00422 0.90306 0.98171 1.19480 0.91213 0.96536 1.05510 1.20613 0.98997 0.93504 1.02662 0.91706 0.86287 0.92047 0.83138 0.84716 0.91300 0.94245 0.90029 0.75724 0.93005 0.95784 0.91097 0.92602 0.84386 0.91146 0.91121 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.15 9.54 -92.49 -0.88 -7.04 16 3 C 0.11 2.44 6.66 22.51 0.15 2.59 16 4 C -0.20 -3.93 9.04 22.37 0.20 -3.73 16 5 C -0.08 -1.85 9.05 22.25 0.20 -1.65 16 6 C -0.13 -3.13 4.96 -19.85 -0.10 -3.23 16 7 C 0.19 5.60 2.78 44.24 0.12 5.72 16 8 H 0.07 2.43 7.44 -2.39 -0.02 2.41 16 9 C -0.15 -4.06 9.46 71.98 0.68 -3.38 16 10 N -0.72 -25.13 4.92 -446.11 -2.19 -27.32 16 11 C 0.52 24.37 7.11 87.66 0.62 24.99 16 12 O -0.58 -31.45 15.12 -3.04 -0.05 -31.49 16 13 C 0.02 1.22 2.64 -12.29 -0.03 1.18 16 14 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 15 C -0.12 -5.42 8.86 71.98 0.64 -4.78 16 16 C -0.53 -31.13 8.37 25.60 0.21 -30.91 16 17 H 0.05 3.06 6.75 -2.91 -0.02 3.04 16 18 C 0.02 1.12 5.30 84.65 0.45 1.57 16 19 N -0.91 -51.57 11.32 21.45 0.24 -51.33 16 20 Si 0.95 45.37 29.54 68.60 2.03 47.40 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 24 C -0.08 -1.84 9.32 22.25 0.21 -1.63 16 25 C -0.13 -2.76 5.89 -19.77 -0.12 -2.87 16 26 C -0.10 -1.74 9.79 71.23 0.70 -1.04 16 27 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 28 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 30 H 0.15 2.17 6.30 -2.91 -0.02 2.15 16 31 H 0.14 2.64 6.89 -2.91 -0.02 2.62 16 32 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.41 12.11 6.27 -92.71 -0.58 11.53 16 36 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 37 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 3.58 6.07 -2.38 -0.01 3.57 16 39 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.14 2.85 8.03 -2.91 -0.02 2.83 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.17 7.53 -2.38 -0.02 1.16 16 43 H 0.08 1.12 8.09 -2.38 -0.02 1.10 16 Total: -1.00 -69.97 352.37 4.63 -65.34 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.43 Total: 20.31 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.05 Total: -15.87 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -1.95 Total: -78.65 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.93 Total: -38.53 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -69.97 4.63 -65.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887318665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.285 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds