Wall clock time and date at job start Tue Mar 31 2020 06:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34713 * 116.99735 * 2 1 4 4 O 1.21476 * 120.00090 * 0.02562 * 3 2 1 5 5 C 1.47722 * 119.99948 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14953 * 353.77309 * 5 3 2 7 7 C 1.37923 * 119.84822 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.15202 * 0.02898 * 7 6 5 9 9 C 1.50699 * 119.85386 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47509 * 89.99259 * 9 8 7 11 11 C 1.46903 * 111.00139 * 293.96055 * 10 9 8 12 12 C 1.46897 * 111.00449 * 170.00187 * 10 9 8 13 13 H 1.09002 * 109.47127 * 310.00364 * 12 10 9 14 14 C 1.53001 * 109.46866 * 70.00327 * 12 10 9 15 15 C 1.50698 * 109.47454 * 190.00314 * 12 10 9 16 16 H 1.08006 * 119.99600 * 0.02562 * 15 12 10 17 17 C 1.37876 * 120.00054 * 180.02562 * 15 12 10 18 18 N 1.31514 * 120.00057 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99750 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47328 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46910 * 120.00062 * 19 17 15 22 22 H 1.48496 * 109.47303 * 239.99912 * 19 17 15 23 23 C 1.38349 * 120.30198 * 0.22260 * 8 7 6 24 24 C 1.37960 * 120.14837 * 359.49804 * 23 8 7 25 25 C 1.50709 * 120.07931 * 180.22988 * 24 23 8 26 26 H 1.08998 * 109.46812 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47104 * 299.99721 * 1 2 3 28 28 H 1.08998 * 109.47371 * 59.99615 * 1 2 3 29 29 H 1.07998 * 120.07891 * 359.97438 * 6 5 3 30 30 H 1.08004 * 119.92774 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47026 * 329.99563 * 9 8 7 32 32 H 1.08998 * 109.47739 * 209.99901 * 9 8 7 33 33 H 1.09003 * 109.47154 * 59.99483 * 11 10 9 34 34 H 1.08997 * 109.47060 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.46794 * 299.99782 * 11 10 9 36 36 H 1.09002 * 109.47218 * 60.00092 * 14 12 10 37 37 H 1.08998 * 109.47408 * 180.02562 * 14 12 10 38 38 H 1.09007 * 109.47073 * 299.99984 * 14 12 10 39 39 H 0.96995 * 119.99895 * 180.02562 * 18 17 15 40 40 H 1.08002 * 119.92781 * 179.72715 * 23 8 7 41 41 H 1.08998 * 109.47002 * 263.71867 * 25 24 23 42 42 H 1.09004 * 109.46567 * 23.71515 * 25 24 23 43 43 H 1.08995 * 109.47426 * 143.71770 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3020 0.1157 0.1321 7 6 5.6789 0.1950 0.1313 8 6 6.3044 1.4226 0.0012 9 6 7.8093 1.5016 0.0018 10 7 8.3068 1.3769 -1.3748 11 6 8.0271 0.0404 -1.9166 12 6 9.7415 1.6842 -1.4460 13 1 9.9357 2.6313 -0.9425 14 6 10.5362 0.5703 -0.7615 15 6 10.1622 1.7873 -2.8894 16 1 9.4361 1.6397 -3.6753 17 6 11.4738 2.0700 -3.2067 18 7 12.3579 2.2492 -2.2497 19 14 11.9953 2.1970 -4.9959 20 1 10.8212 1.9548 -5.8722 21 1 12.5366 3.5548 -5.2585 22 1 13.0427 1.1833 -5.2794 23 6 5.5543 2.5784 -0.1243 24 6 4.1763 2.5128 -0.1308 25 6 3.3608 3.7722 -0.2728 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.8152 -0.8430 0.2342 30 1 6.2705 -0.7028 0.2334 31 1 8.2153 0.6930 0.6094 32 1 8.1227 2.4599 0.4160 33 1 6.9511 -0.1338 -1.9167 34 1 8.4054 -0.0245 -2.9368 35 1 8.5169 -0.7120 -1.2985 36 1 10.3420 -0.3767 -1.2651 37 1 11.6007 0.7985 -0.8139 38 1 10.2319 0.4958 0.2826 39 1 13.2806 2.4484 -2.4730 40 1 6.0487 3.5337 -0.2210 41 1 3.0597 4.1233 0.7142 42 1 3.9595 4.5392 -0.7642 43 1 2.4735 3.5651 -0.8710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891933166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:39 Heat of formation + Delta-G solvation = -53.450440 kcal Electronic energy + Delta-G solvation = -23115.573488 eV Core-core repulsion = 19740.099742 eV Total energy + Delta-G solvation = -3375.473746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75697 -39.19765 -37.15666 -36.48622 -33.34234 -32.39147 -31.65842 -28.77548 -28.18226 -26.86482 -26.72221 -25.23951 -24.28179 -22.12928 -21.87750 -20.32911 -19.17005 -17.94682 -17.06415 -16.51987 -16.24478 -15.38081 -15.35016 -14.82151 -14.64631 -14.33438 -13.97200 -13.63547 -13.42710 -13.12792 -13.07019 -12.92440 -12.56580 -12.30992 -12.16955 -11.90480 -11.74703 -11.37033 -11.17921 -11.05462 -10.96546 -10.91501 -10.77430 -10.65917 -10.45259 -10.16552 -10.06259 -9.83431 -8.96184 -8.74365 -8.63871 -8.40811 -7.21325 -6.03113 -4.06634 0.73937 1.44188 2.50712 2.58152 3.29127 3.37287 3.42112 3.78239 4.40946 4.61982 4.81794 4.85854 4.89938 4.94969 4.96301 5.20549 5.25731 5.29725 5.41544 5.44498 5.63640 5.75153 5.79542 5.84644 6.00621 6.09316 6.14558 6.21283 6.29288 6.30819 6.35828 6.58536 6.63029 6.73479 6.80282 6.85657 6.95457 7.07560 7.40897 7.65412 7.67402 7.81420 8.08129 8.33469 8.54311 8.99680 9.58592 11.04025 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027931 B = 0.003155 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.241205 B = 8872.931190 C = 9011.396548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.510 3.490 4 O -0.507 6.507 5 C -0.148 4.148 6 C -0.059 4.059 7 C -0.137 4.137 8 C -0.014 4.014 9 C 0.081 3.919 10 N -0.527 5.527 11 C 0.030 3.970 12 C 0.210 3.790 13 H 0.039 0.961 14 C -0.173 4.173 15 C -0.497 4.497 16 H 0.063 0.937 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.286 1.286 23 C -0.116 4.116 24 C -0.017 4.017 25 C -0.122 4.122 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.017 0.983 36 H 0.032 0.968 37 H 0.089 0.911 38 H 0.006 0.994 39 H 0.260 0.740 40 H 0.134 0.866 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.372 -4.243 6.647 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.357 3.643 4 O -0.397 6.397 5 C -0.149 4.149 6 C -0.078 4.078 7 C -0.155 4.155 8 C -0.015 4.015 9 C -0.047 4.047 10 N -0.250 5.250 11 C -0.118 4.118 12 C 0.105 3.895 13 H 0.057 0.943 14 C -0.232 4.232 15 C -0.536 4.536 16 H 0.081 0.919 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.134 4.134 24 C -0.018 4.018 25 C -0.178 4.178 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.152 0.848 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.646 -3.562 6.367 20.022 hybrid contribution 0.696 -0.599 -0.426 1.013 sum -17.950 -4.161 5.941 19.360 Atomic orbital electron populations 1.23243 0.76301 1.03587 1.02513 1.86561 1.23295 1.33026 1.84516 1.21323 0.89260 0.81176 0.72518 1.90775 1.67085 1.35486 1.46304 1.18809 0.88374 0.94875 1.12886 1.21313 0.93770 0.97355 0.95322 1.21066 0.93999 0.97832 1.02609 1.20344 0.96672 0.92686 0.91787 1.21159 0.88941 1.01729 0.92885 1.62408 1.20289 1.26994 1.15343 1.22317 0.98779 0.89661 1.01045 1.19354 0.79458 0.93971 0.96760 0.94278 1.22417 1.05698 0.99655 0.95427 1.21134 0.93858 1.47170 0.91413 0.91866 1.24924 0.96583 0.95431 0.97391 1.69889 1.03061 1.49074 1.31441 0.86466 0.78495 0.77560 0.85045 1.19721 1.21066 1.21198 1.20945 0.91908 0.99164 1.01428 1.19989 0.93942 0.93852 0.93968 1.21092 1.00029 0.93629 1.03024 0.88144 0.91952 0.91894 0.84923 0.85468 0.94268 0.90229 0.93539 0.90800 0.96408 0.94924 0.89276 0.97466 0.93053 0.84790 0.90793 0.91771 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.03 9.84 -40.53 -0.40 -4.43 16 3 C 0.51 6.76 7.83 34.61 0.27 7.03 16 4 O -0.51 -7.35 13.14 -19.25 -0.25 -7.60 16 5 C -0.15 -2.01 5.87 -104.98 -0.62 -2.62 16 6 C -0.06 -0.74 9.62 -39.17 -0.38 -1.12 16 7 C -0.14 -1.83 7.94 -39.64 -0.31 -2.14 16 8 C -0.01 -0.21 4.89 -104.53 -0.51 -0.72 16 9 C 0.08 1.39 4.68 -4.98 -0.02 1.36 16 10 N -0.53 -10.86 4.69 -237.73 -1.12 -11.97 16 11 C 0.03 0.58 8.26 60.07 0.50 1.07 16 12 C 0.21 5.11 2.31 -68.87 -0.16 4.95 16 13 H 0.04 1.04 7.93 -51.93 -0.41 0.63 16 14 C -0.17 -4.03 8.22 37.16 0.31 -3.73 16 15 C -0.50 -13.32 7.91 -34.44 -0.27 -13.60 16 16 H 0.06 1.72 7.12 -52.48 -0.37 1.34 16 17 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 18 N -0.90 -25.05 11.32 55.43 0.63 -24.42 16 19 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.12 -1.68 9.31 -39.64 -0.37 -2.05 16 24 C -0.02 -0.24 5.92 -104.21 -0.62 -0.85 16 25 C -0.12 -1.51 8.73 36.01 0.31 -1.20 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.13 1.38 7.63 -52.49 -0.40 0.98 16 30 H 0.13 1.55 8.03 -52.48 -0.42 1.13 16 31 H 0.04 0.66 7.00 -51.93 -0.36 0.30 16 32 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 33 H 0.05 0.78 6.16 -51.93 -0.32 0.46 16 34 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 35 H 0.02 0.32 6.46 -51.93 -0.34 -0.01 16 36 H 0.03 0.74 6.42 -51.93 -0.33 0.40 16 37 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 38 H 0.01 0.14 6.91 -51.92 -0.36 -0.22 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 43 H 0.09 1.18 5.86 -51.93 -0.30 0.88 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -29.28 344.37 -8.23 -37.51 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.36 Total: 0.41 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.90 Total: -10.79 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.49 Total: -36.39 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.65 Total: -12.03 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.28 -8.23 -37.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891933166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.937 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds