Wall clock time and date at job start Tue Mar 31 2020 06:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34713 * 116.99735 * 2 1 4 4 O 1.21476 * 120.00090 * 0.02562 * 3 2 1 5 5 C 1.47722 * 119.99948 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14953 * 353.77309 * 5 3 2 7 7 C 1.37923 * 119.84822 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.15202 * 0.02898 * 7 6 5 9 9 C 1.50699 * 119.85386 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47509 * 89.99259 * 9 8 7 11 11 C 1.46903 * 111.00139 * 293.96055 * 10 9 8 12 12 C 1.46897 * 111.00449 * 170.00187 * 10 9 8 13 13 H 1.09002 * 109.47127 * 310.00364 * 12 10 9 14 14 C 1.53001 * 109.46866 * 70.00327 * 12 10 9 15 15 C 1.50698 * 109.47454 * 190.00314 * 12 10 9 16 16 H 1.08006 * 119.99600 * 0.02562 * 15 12 10 17 17 C 1.37876 * 120.00054 * 180.02562 * 15 12 10 18 18 N 1.31514 * 120.00057 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99750 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47328 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46910 * 120.00062 * 19 17 15 22 22 H 1.48496 * 109.47303 * 239.99912 * 19 17 15 23 23 C 1.38349 * 120.30198 * 0.22260 * 8 7 6 24 24 C 1.37960 * 120.14837 * 359.49804 * 23 8 7 25 25 C 1.50709 * 120.07931 * 180.22988 * 24 23 8 26 26 H 1.08998 * 109.46812 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47104 * 299.99721 * 1 2 3 28 28 H 1.08998 * 109.47371 * 59.99615 * 1 2 3 29 29 H 1.07998 * 120.07891 * 359.97438 * 6 5 3 30 30 H 1.08004 * 119.92774 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47026 * 329.99563 * 9 8 7 32 32 H 1.08998 * 109.47739 * 209.99901 * 9 8 7 33 33 H 1.09003 * 109.47154 * 59.99483 * 11 10 9 34 34 H 1.08997 * 109.47060 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.46794 * 299.99782 * 11 10 9 36 36 H 1.09002 * 109.47218 * 60.00092 * 14 12 10 37 37 H 1.08998 * 109.47408 * 180.02562 * 14 12 10 38 38 H 1.09007 * 109.47073 * 299.99984 * 14 12 10 39 39 H 0.96995 * 119.99895 * 180.02562 * 18 17 15 40 40 H 1.08002 * 119.92781 * 179.72715 * 23 8 7 41 41 H 1.08998 * 109.47002 * 263.71867 * 25 24 23 42 42 H 1.09004 * 109.46567 * 23.71515 * 25 24 23 43 43 H 1.08995 * 109.47426 * 143.71770 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3020 0.1157 0.1321 7 6 5.6789 0.1950 0.1313 8 6 6.3044 1.4226 0.0012 9 6 7.8093 1.5016 0.0018 10 7 8.3068 1.3769 -1.3748 11 6 8.0271 0.0404 -1.9166 12 6 9.7415 1.6842 -1.4460 13 1 9.9357 2.6313 -0.9425 14 6 10.5362 0.5703 -0.7615 15 6 10.1622 1.7873 -2.8894 16 1 9.4361 1.6397 -3.6753 17 6 11.4738 2.0700 -3.2067 18 7 12.3579 2.2492 -2.2497 19 14 11.9953 2.1970 -4.9959 20 1 10.8212 1.9548 -5.8722 21 1 12.5366 3.5548 -5.2585 22 1 13.0427 1.1833 -5.2794 23 6 5.5543 2.5784 -0.1243 24 6 4.1763 2.5128 -0.1308 25 6 3.3608 3.7722 -0.2728 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.8152 -0.8430 0.2342 30 1 6.2705 -0.7028 0.2334 31 1 8.2153 0.6930 0.6094 32 1 8.1227 2.4599 0.4160 33 1 6.9511 -0.1338 -1.9167 34 1 8.4054 -0.0245 -2.9368 35 1 8.5169 -0.7120 -1.2985 36 1 10.3420 -0.3767 -1.2651 37 1 11.6007 0.7985 -0.8139 38 1 10.2319 0.4958 0.2826 39 1 13.2806 2.4484 -2.4730 40 1 6.0487 3.5337 -0.2210 41 1 3.0597 4.1233 0.7142 42 1 3.9595 4.5392 -0.7642 43 1 2.4735 3.5651 -0.8710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891933166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:39 Heat of formation + Delta-G solvation = -69.282267 kcal Electronic energy + Delta-G solvation = -23116.260007 eV Core-core repulsion = 19740.099742 eV Total energy + Delta-G solvation = -3376.160265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74337 -40.31562 -38.64496 -37.50440 -35.03476 -33.64756 -32.95006 -30.43235 -29.20092 -28.03247 -27.78947 -27.22543 -25.71498 -23.40806 -22.87420 -21.57480 -20.78105 -18.91947 -18.22241 -18.00253 -17.41293 -17.08650 -16.48147 -16.16579 -16.08016 -15.56320 -15.05877 -14.94251 -14.84211 -14.39039 -14.25120 -14.09207 -13.88769 -13.51665 -13.25237 -13.11102 -13.00854 -12.94093 -12.68972 -12.59344 -12.49751 -12.45112 -12.24623 -12.07116 -11.87831 -11.78099 -11.67536 -11.13070 -10.89956 -10.47826 -9.89003 -9.69605 -8.83616 -8.09273 -6.19406 -0.32888 0.39834 1.41969 1.44557 1.47727 1.55996 1.71477 2.44134 2.70596 3.20187 3.53484 3.65948 3.79449 3.91330 3.91981 4.29514 4.32336 4.34757 4.36024 4.49830 4.58771 4.67876 4.71377 4.74207 4.78481 4.79935 4.81570 4.91048 4.91896 5.01557 5.15341 5.16216 5.21867 5.27584 5.32224 5.53878 5.56841 5.63256 5.73433 5.81505 5.89394 6.22792 6.49623 6.69511 6.72914 6.94071 7.49806 8.96734 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027931 B = 0.003155 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.241205 B = 8872.931190 C = 9011.396548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.511 3.489 4 O -0.524 6.524 5 C -0.156 4.156 6 C -0.050 4.050 7 C -0.135 4.135 8 C -0.027 4.027 9 C 0.086 3.914 10 N -0.539 5.539 11 C 0.037 3.963 12 C 0.216 3.784 13 H 0.008 0.992 14 C -0.159 4.159 15 C -0.511 4.511 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.920 5.920 19 Si 0.956 3.044 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.281 1.281 23 C -0.124 4.124 24 C -0.025 4.025 25 C -0.117 4.117 26 H 0.133 0.867 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.158 0.842 30 H 0.143 0.857 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.035 0.965 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.133 0.867 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.919 -5.566 6.597 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.358 3.642 4 O -0.416 6.416 5 C -0.157 4.157 6 C -0.068 4.068 7 C -0.153 4.153 8 C -0.028 4.028 9 C -0.041 4.041 10 N -0.262 5.262 11 C -0.111 4.111 12 C 0.109 3.891 13 H 0.026 0.974 14 C -0.218 4.218 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.782 3.218 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.207 1.207 23 C -0.142 4.142 24 C -0.026 4.026 25 C -0.173 4.173 26 H 0.151 0.849 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.176 0.824 30 H 0.161 0.839 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.151 0.849 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.215 -4.900 6.322 21.740 hybrid contribution 1.047 -0.210 -0.362 1.127 sum -19.168 -5.111 5.960 20.714 Atomic orbital electron populations 1.23575 0.74296 1.05822 1.02624 1.86540 1.25223 1.31769 1.83961 1.21276 0.89152 0.81540 0.72189 1.90769 1.67437 1.36208 1.47180 1.19029 0.89009 0.95163 1.12506 1.21538 0.93312 0.98033 0.93889 1.21213 0.94544 0.97582 1.02005 1.20182 0.95202 0.93760 0.93670 1.21101 0.90539 1.01622 0.90880 1.62251 1.17846 1.28221 1.17908 1.22257 1.00187 0.88892 0.99735 1.19088 0.81955 0.92904 0.95196 0.97366 1.22212 1.03639 0.99303 0.96676 1.21390 0.93918 1.47058 0.92574 0.92748 1.25642 0.96706 0.95244 1.01048 1.70008 1.03260 1.49697 1.33110 0.85532 0.78079 0.77494 0.80667 1.19378 1.20860 1.20692 1.20980 0.92313 0.99140 1.01798 1.20131 0.93772 0.94665 0.93986 1.21052 0.99580 0.93427 1.03222 0.84890 0.91743 0.91950 0.82445 0.83948 0.93612 0.90906 0.91194 0.92955 0.95720 0.94634 0.92100 0.95391 0.93022 0.84938 0.90308 0.90957 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.22 9.84 -56.23 -0.55 -7.77 16 3 C 0.51 12.65 7.83 70.33 0.55 13.20 16 4 O -0.52 -14.61 13.14 19.91 0.26 -14.35 16 5 C -0.16 -3.94 5.87 -20.10 -0.12 -4.06 16 6 C -0.05 -1.11 9.62 22.54 0.22 -0.89 16 7 C -0.14 -3.28 7.94 22.23 0.18 -3.11 16 8 C -0.03 -0.79 4.89 -19.80 -0.10 -0.89 16 9 C 0.09 2.90 4.68 85.56 0.40 3.30 16 10 N -0.54 -22.04 4.69 -906.04 -4.25 -26.30 16 11 C 0.04 1.38 8.26 127.69 1.05 2.43 16 12 C 0.22 10.60 2.31 44.17 0.10 10.70 16 13 H 0.01 0.46 7.93 -2.39 -0.02 0.44 16 14 C -0.16 -7.42 8.22 71.98 0.59 -6.83 16 15 C -0.51 -27.70 7.91 25.60 0.20 -27.50 16 16 H 0.05 2.98 7.12 -2.91 -0.02 2.96 16 17 C 0.01 0.65 5.30 84.65 0.45 1.10 16 18 N -0.92 -52.23 11.32 21.45 0.24 -51.99 16 19 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 C -0.12 -3.49 9.31 22.23 0.21 -3.29 16 24 C -0.03 -0.67 5.92 -19.60 -0.12 -0.79 16 25 C -0.12 -2.82 8.73 71.24 0.62 -2.19 16 26 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.16 2.70 7.63 -2.91 -0.02 2.68 16 30 H 0.14 3.01 8.03 -2.91 -0.02 2.99 16 31 H 0.05 1.47 7.00 -2.39 -0.02 1.45 16 32 H 0.07 2.51 7.87 -2.39 -0.02 2.49 16 33 H 0.07 2.22 6.16 -2.39 -0.01 2.20 16 34 H 0.05 2.13 6.76 -2.39 -0.02 2.12 16 35 H 0.02 0.86 6.46 -2.39 -0.02 0.85 16 36 H 0.03 1.59 6.42 -2.39 -0.02 1.57 16 37 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 38 H 0.03 1.14 6.91 -2.38 -0.02 1.12 16 39 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 40 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 1.58 8.04 -2.39 -0.02 1.56 16 43 H 0.08 2.10 5.86 -2.39 -0.01 2.08 16 Total: -1.00 -62.43 344.37 4.17 -58.26 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.00 Total: 13.84 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 5.44 Total: -17.23 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -4.01 Total: -78.29 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.29 Total: -22.12 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -62.43 4.17 -58.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891933166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.020 kcal (2) G-P(sol) polarization free energy of solvation -62.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds