Wall clock time and date at job start Tue Mar 31 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00053 * 2 1 4 4 C 1.38750 * 120.05886 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.94697 * 179.68565 * 4 3 2 6 6 C 1.38290 * 120.05348 * 0.56216 * 5 4 3 7 7 C 1.50699 * 119.94152 * 179.72696 * 6 5 4 8 8 N 1.46906 * 109.47317 * 259.72982 * 7 6 5 9 9 C 1.47897 * 110.99555 * 69.87469 * 8 7 6 10 10 C 1.54000 * 107.05672 * 145.84575 * 9 8 7 11 11 C 1.54598 * 105.22213 * 358.72428 * 10 9 8 12 12 O 1.42900 * 110.72206 * 96.45416 * 11 10 9 13 13 C 1.50709 * 110.72231 * 219.73162 * 11 10 9 14 14 H 1.07997 * 119.99484 * 118.54840 * 13 11 10 15 15 C 1.37869 * 119.99916 * 298.55075 * 13 11 10 16 16 N 1.31519 * 120.00697 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99863 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47004 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47386 * 119.99630 * 17 15 13 20 20 H 1.48500 * 109.47203 * 239.99911 * 17 15 13 21 21 C 1.48533 * 111.00245 * 187.27419 * 8 7 6 22 22 C 1.38240 * 120.11154 * 359.46477 * 6 5 4 23 23 C 1.50700 * 119.97296 * 180.27317 * 22 6 5 24 24 C 1.38166 * 120.05643 * 0.23732 * 22 6 5 25 25 H 1.09000 * 109.47283 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46462 * 299.99457 * 1 2 3 27 27 H 1.08995 * 109.47446 * 59.99892 * 1 2 3 28 28 H 1.08001 * 120.02527 * 359.95820 * 4 3 2 29 29 H 1.08002 * 119.97664 * 180.32185 * 5 4 3 30 30 H 1.09004 * 109.46704 * 139.73410 * 7 6 5 31 31 H 1.08991 * 109.47304 * 19.73150 * 7 6 5 32 32 H 1.09000 * 109.91881 * 26.49521 * 9 8 7 33 33 H 1.09002 * 110.08496 * 265.28456 * 9 8 7 34 34 H 1.09002 * 110.31026 * 117.69182 * 10 9 8 35 35 H 1.09000 * 110.30915 * 239.76211 * 10 9 8 36 36 H 0.96701 * 114.00035 * 61.44787 * 12 11 10 37 37 H 0.96995 * 120.00378 * 179.97438 * 16 15 13 38 38 H 1.09003 * 110.66452 * 318.71648 * 21 8 7 39 39 H 1.08998 * 110.66933 * 81.84247 * 21 8 7 40 40 H 1.08993 * 109.47705 * 89.99093 * 23 22 6 41 41 H 1.08998 * 109.47098 * 209.99462 * 23 22 6 42 42 H 1.09009 * 109.46819 * 329.98994 * 23 22 6 43 43 H 1.07996 * 120.02682 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0071 6 6 3.3020 3.6757 0.0014 7 6 3.9861 5.0184 0.0024 8 7 4.4226 5.3466 -1.3614 9 6 3.2636 5.6334 -2.2342 10 6 3.7064 6.7212 -3.2303 11 6 5.1670 7.0522 -2.8470 12 8 6.0826 6.3225 -3.6664 13 6 5.4224 8.5340 -2.9489 14 1 5.7099 9.0939 -2.0713 15 6 5.2888 9.1747 -4.1624 16 7 4.9391 8.4928 -5.2312 17 14 5.6060 11.0112 -4.2888 18 1 5.9833 11.5414 -2.9539 19 1 6.7106 11.2578 -5.2501 20 1 4.3756 11.6946 -4.7626 21 6 5.2527 6.5783 -1.3728 22 6 4.0560 2.5170 0.0003 23 6 5.5608 2.5980 0.0003 24 6 3.4311 1.2847 -0.0001 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 0.2129 2.3203 0.0003 29 1 1.3341 4.5113 0.0128 30 1 4.8526 4.9842 0.6628 31 1 3.2907 5.7802 0.3545 32 1 2.4284 5.9962 -1.6352 33 1 2.9697 4.7331 -2.7740 34 1 3.6598 6.3412 -4.2509 35 1 3.0785 7.6062 -3.1277 36 1 6.0135 6.5246 -4.6095 37 1 4.8448 8.9436 -6.0848 38 1 4.8345 7.3302 -0.7035 39 1 6.2832 6.3503 -1.1008 40 1 5.9238 2.6168 1.0278 41 1 5.9714 1.7293 -0.5143 42 1 5.8757 3.5068 -0.5129 43 1 4.0206 0.3799 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895106727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:49 Heat of formation + Delta-G solvation = -60.072102 kcal Electronic energy + Delta-G solvation = -23618.136610 eV Core-core repulsion = 20242.375728 eV Total energy + Delta-G solvation = -3375.760882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22605 -38.61890 -37.43762 -34.66415 -32.44527 -32.09356 -31.48968 -29.23123 -28.06739 -27.54499 -26.48349 -25.12443 -23.79167 -21.96030 -20.83689 -19.80330 -19.42017 -17.70239 -16.97533 -16.43232 -15.81683 -15.40438 -15.26517 -14.87521 -14.46529 -14.18374 -13.83886 -13.73440 -13.32709 -13.18195 -12.90652 -12.65795 -12.23638 -12.14699 -11.99001 -11.80146 -11.56392 -11.31536 -11.26941 -11.13567 -10.81849 -10.71750 -10.69272 -10.53395 -10.39165 -10.28237 -9.72960 -9.12725 -8.65948 -8.57786 -8.12181 -7.94387 -7.65260 -6.18843 -4.27096 1.44680 1.52496 3.21617 3.21939 3.30509 3.34317 3.79640 4.31033 4.74113 4.83910 4.91152 4.98163 5.01397 5.06139 5.13355 5.27969 5.35040 5.45232 5.50498 5.73416 5.74679 5.84862 5.87075 5.96084 6.01626 6.06698 6.13801 6.23037 6.31884 6.43603 6.49783 6.55439 6.65518 6.84793 6.89361 6.94092 7.09017 7.40700 7.43296 7.54686 7.60109 7.75225 7.84698 8.21590 8.75789 9.41922 9.58626 10.88050 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031180 B = 0.003482 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.797029 B = 8039.383608 C = 8339.153159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.216 4.216 5 C -0.071 4.071 6 C -0.103 4.103 7 C 0.085 3.915 8 N -0.505 5.505 9 C 0.041 3.959 10 C -0.129 4.129 11 C 0.257 3.743 12 O -0.579 6.579 13 C -0.536 4.536 14 H 0.060 0.940 15 C 0.071 3.929 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.051 3.949 22 C -0.021 4.021 23 C -0.122 4.122 24 C -0.156 4.156 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.026 0.974 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.376 0.624 37 H 0.265 0.735 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 -12.199 10.196 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.076 3.924 4 C -0.234 4.234 5 C -0.090 4.090 6 C -0.104 4.104 7 C -0.043 4.043 8 N -0.229 5.229 9 C -0.087 4.087 10 C -0.168 4.168 11 C 0.217 3.783 12 O -0.387 6.387 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.132 4.132 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.076 4.076 22 C -0.021 4.021 23 C -0.178 4.178 24 C -0.175 4.175 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.226 0.774 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.839 -13.065 10.409 18.050 hybrid contribution -1.084 2.069 -0.441 2.377 sum -7.923 -10.996 9.967 16.824 Atomic orbital electron populations 1.23000 0.78772 1.03549 1.01298 1.86037 1.21090 1.27306 1.89077 1.18955 0.92284 0.83872 0.97277 1.21085 0.99579 0.92343 1.10431 1.20827 0.94034 0.96844 0.97311 1.19624 0.92908 0.94974 1.02852 1.21144 0.98293 0.92319 0.92504 1.64777 1.16898 1.34602 1.06609 1.22871 0.91464 0.98855 0.95460 1.22934 1.00198 0.95740 0.97929 1.19348 0.84783 0.88953 0.85218 1.86139 1.61965 1.68248 1.22364 1.21641 1.47351 0.93273 0.95223 0.92130 1.25000 0.93867 0.98650 0.95659 1.69751 1.47493 1.36178 0.99869 0.86450 0.77900 0.84873 0.78222 1.19719 1.20813 1.20979 1.23227 0.96960 0.88855 0.98523 1.19546 0.96365 0.91175 0.95037 1.20916 0.90430 1.04550 1.01909 1.20258 0.91128 0.98096 1.08028 0.88540 0.92863 0.92717 0.85936 0.86184 0.90355 0.94562 0.95559 0.92125 0.91629 0.92239 0.77446 0.92468 0.93749 0.90898 0.91584 0.91784 0.88826 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.98 10.50 -19.42 -0.20 -4.18 16 3 C 0.12 1.64 6.69 -39.22 -0.26 1.38 16 4 C -0.22 -2.77 9.04 -39.44 -0.36 -3.13 16 5 C -0.07 -0.99 9.46 -39.61 -0.37 -1.37 16 6 C -0.10 -1.55 4.94 -104.60 -0.52 -2.06 16 7 C 0.09 1.35 4.02 -4.97 -0.02 1.33 16 8 N -0.51 -9.69 4.59 -231.79 -1.06 -10.76 16 9 C 0.04 0.82 6.00 -2.75 -0.02 0.80 16 10 C -0.13 -3.01 5.26 -25.37 -0.13 -3.14 16 11 C 0.26 6.38 0.96 -89.82 -0.09 6.29 16 12 O -0.58 -15.26 13.09 -35.23 -0.46 -15.72 16 13 C -0.54 -14.30 8.15 -34.44 -0.28 -14.58 16 14 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 15 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 16 N -0.89 -23.92 11.02 55.43 0.61 -23.31 16 17 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.05 1.10 5.69 -1.81 -0.01 1.09 16 22 C -0.02 -0.30 5.88 -104.65 -0.62 -0.91 16 23 C -0.12 -1.60 9.26 36.01 0.33 -1.27 16 24 C -0.16 -2.17 9.64 -39.43 -0.38 -2.55 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 27 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.12 1.28 6.30 -52.49 -0.33 0.95 16 29 H 0.12 1.52 8.03 -52.49 -0.42 1.10 16 30 H 0.08 1.15 7.25 -51.93 -0.38 0.78 16 31 H 0.04 0.56 7.67 -51.93 -0.40 0.16 16 32 H 0.03 0.48 7.57 -51.93 -0.39 0.09 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.62 7.99 -51.93 -0.41 1.20 16 35 H 0.06 1.44 7.84 -51.93 -0.41 1.04 16 36 H 0.38 10.04 7.48 45.56 0.34 10.38 16 37 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.04 0.92 7.92 -51.93 -0.41 0.51 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.09 1.43 6.34 -51.92 -0.33 1.11 16 43 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -28.64 344.62 -8.78 -37.42 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.01 Total: 10.91 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.82 Total: -15.12 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: -0.45 Total: -34.06 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.67 Total: -19.91 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.64 -8.78 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895106727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.655 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds