Wall clock time and date at job start Tue Mar 31 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00053 * 2 1 4 4 C 1.38750 * 120.05886 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.94697 * 179.68565 * 4 3 2 6 6 C 1.38290 * 120.05348 * 0.56216 * 5 4 3 7 7 C 1.50699 * 119.94152 * 179.72696 * 6 5 4 8 8 N 1.46906 * 109.47317 * 259.72982 * 7 6 5 9 9 C 1.47897 * 110.99555 * 69.87469 * 8 7 6 10 10 C 1.54000 * 107.05672 * 145.84575 * 9 8 7 11 11 C 1.54598 * 105.22213 * 358.72428 * 10 9 8 12 12 O 1.42900 * 110.72206 * 96.45416 * 11 10 9 13 13 C 1.50709 * 110.72231 * 219.73162 * 11 10 9 14 14 H 1.07997 * 119.99484 * 118.54840 * 13 11 10 15 15 C 1.37869 * 119.99916 * 298.55075 * 13 11 10 16 16 N 1.31519 * 120.00697 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99863 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47004 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47386 * 119.99630 * 17 15 13 20 20 H 1.48500 * 109.47203 * 239.99911 * 17 15 13 21 21 C 1.48533 * 111.00245 * 187.27419 * 8 7 6 22 22 C 1.38240 * 120.11154 * 359.46477 * 6 5 4 23 23 C 1.50700 * 119.97296 * 180.27317 * 22 6 5 24 24 C 1.38166 * 120.05643 * 0.23732 * 22 6 5 25 25 H 1.09000 * 109.47283 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46462 * 299.99457 * 1 2 3 27 27 H 1.08995 * 109.47446 * 59.99892 * 1 2 3 28 28 H 1.08001 * 120.02527 * 359.95820 * 4 3 2 29 29 H 1.08002 * 119.97664 * 180.32185 * 5 4 3 30 30 H 1.09004 * 109.46704 * 139.73410 * 7 6 5 31 31 H 1.08991 * 109.47304 * 19.73150 * 7 6 5 32 32 H 1.09000 * 109.91881 * 26.49521 * 9 8 7 33 33 H 1.09002 * 110.08496 * 265.28456 * 9 8 7 34 34 H 1.09002 * 110.31026 * 117.69182 * 10 9 8 35 35 H 1.09000 * 110.30915 * 239.76211 * 10 9 8 36 36 H 0.96701 * 114.00035 * 61.44787 * 12 11 10 37 37 H 0.96995 * 120.00378 * 179.97438 * 16 15 13 38 38 H 1.09003 * 110.66452 * 318.71648 * 21 8 7 39 39 H 1.08998 * 110.66933 * 81.84247 * 21 8 7 40 40 H 1.08993 * 109.47705 * 89.99093 * 23 22 6 41 41 H 1.08998 * 109.47098 * 209.99462 * 23 22 6 42 42 H 1.09009 * 109.46819 * 329.98994 * 23 22 6 43 43 H 1.07996 * 120.02682 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0071 6 6 3.3020 3.6757 0.0014 7 6 3.9861 5.0184 0.0024 8 7 4.4226 5.3466 -1.3614 9 6 3.2636 5.6334 -2.2342 10 6 3.7064 6.7212 -3.2303 11 6 5.1670 7.0522 -2.8470 12 8 6.0826 6.3225 -3.6664 13 6 5.4224 8.5340 -2.9489 14 1 5.7099 9.0939 -2.0713 15 6 5.2888 9.1747 -4.1624 16 7 4.9391 8.4928 -5.2312 17 14 5.6060 11.0112 -4.2888 18 1 5.9833 11.5414 -2.9539 19 1 6.7106 11.2578 -5.2501 20 1 4.3756 11.6946 -4.7626 21 6 5.2527 6.5783 -1.3728 22 6 4.0560 2.5170 0.0003 23 6 5.5608 2.5980 0.0003 24 6 3.4311 1.2847 -0.0001 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 0.2129 2.3203 0.0003 29 1 1.3341 4.5113 0.0128 30 1 4.8526 4.9842 0.6628 31 1 3.2907 5.7802 0.3545 32 1 2.4284 5.9962 -1.6352 33 1 2.9697 4.7331 -2.7740 34 1 3.6598 6.3412 -4.2509 35 1 3.0785 7.6062 -3.1277 36 1 6.0135 6.5246 -4.6095 37 1 4.8448 8.9436 -6.0848 38 1 4.8345 7.3302 -0.7035 39 1 6.2832 6.3503 -1.1008 40 1 5.9238 2.6168 1.0278 41 1 5.9714 1.7293 -0.5143 42 1 5.8757 3.5068 -0.5129 43 1 4.0206 0.3799 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895106727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:48 Heat of formation + Delta-G solvation = -78.633253 kcal Electronic energy + Delta-G solvation = -23618.941482 eV Core-core repulsion = 20242.375728 eV Total energy + Delta-G solvation = -3376.565754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24316 -40.06441 -38.67585 -36.40467 -34.14492 -33.49032 -32.82267 -30.60774 -29.76459 -28.69206 -27.38521 -26.71886 -25.34145 -23.03286 -22.17452 -21.39514 -21.02686 -18.96024 -18.62220 -17.51814 -16.92873 -16.85692 -16.62481 -16.50406 -16.02013 -15.57751 -15.18622 -14.93798 -14.50734 -14.40652 -14.28444 -14.10465 -13.85775 -13.34158 -13.19168 -13.02816 -12.95104 -12.82512 -12.79609 -12.66032 -12.50082 -12.24088 -12.18257 -11.92390 -11.72497 -11.71492 -11.51198 -11.02949 -10.58365 -10.06747 -9.68188 -9.25855 -8.96038 -8.19501 -6.35370 0.42235 0.46360 1.39674 1.43256 1.53532 2.39049 2.39976 2.71970 3.05345 3.35762 3.84373 3.85907 3.98156 4.04226 4.14770 4.21555 4.30039 4.38661 4.40564 4.45579 4.47031 4.52233 4.69671 4.70263 4.74738 4.78917 4.88597 4.90037 4.94953 5.08750 5.13155 5.25007 5.27921 5.41283 5.47987 5.51883 5.59597 5.75612 5.81926 5.86729 5.96273 6.22458 6.32494 6.49024 6.71427 7.36665 7.50308 8.85900 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031180 B = 0.003482 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.797029 B = 8039.383608 C = 8339.153159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.117 3.883 4 C -0.216 4.216 5 C -0.076 4.076 6 C -0.122 4.122 7 C 0.089 3.911 8 N -0.509 5.509 9 C 0.053 3.947 10 C -0.120 4.120 11 C 0.239 3.761 12 O -0.588 6.588 13 C -0.559 4.559 14 H 0.056 0.944 15 C 0.029 3.971 16 N -0.912 5.912 17 Si 0.959 3.041 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.279 1.279 21 C 0.061 3.939 22 C -0.030 4.030 23 C -0.118 4.118 24 C -0.170 4.170 25 H 0.120 0.880 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.147 0.853 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.370 0.630 37 H 0.267 0.733 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.457 -12.652 11.336 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.072 3.928 4 C -0.235 4.235 5 C -0.095 4.095 6 C -0.123 4.123 7 C -0.038 4.038 8 N -0.232 5.232 9 C -0.074 4.074 10 C -0.159 4.159 11 C 0.199 3.801 12 O -0.396 6.396 13 C -0.598 4.598 14 H 0.074 0.926 15 C -0.172 4.172 16 N -0.551 5.551 17 Si 0.785 3.215 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.067 4.067 22 C -0.031 4.031 23 C -0.174 4.174 24 C -0.188 4.188 25 H 0.138 0.862 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.165 0.835 29 H 0.149 0.851 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.218 0.782 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.951 -13.532 11.564 19.496 hybrid contribution -0.797 2.116 -0.789 2.395 sum -8.748 -11.416 10.775 17.971 Atomic orbital electron populations 1.23318 0.76612 1.05486 1.02109 1.86026 1.23356 1.26782 1.88800 1.19127 0.92446 0.84636 0.96585 1.21335 1.00864 0.91689 1.09585 1.21017 0.93746 0.97789 0.96951 1.19609 0.93542 0.94469 1.04644 1.21157 0.99013 0.93142 0.90484 1.64726 1.16615 1.33149 1.08756 1.22705 0.92202 0.97521 0.95014 1.22727 0.99339 0.96121 0.97690 1.19624 0.85145 0.88404 0.86896 1.86135 1.62764 1.68583 1.22082 1.21909 1.47969 0.94496 0.95391 0.92621 1.25699 0.93585 1.02540 0.95371 1.69842 1.47592 1.37536 1.00142 0.85500 0.77748 0.80159 0.78123 1.19411 1.20631 1.20480 1.23054 0.97473 0.89899 0.96255 1.19705 0.96887 0.91379 0.95100 1.20875 0.90001 1.03662 1.02859 1.20437 0.91784 0.98269 1.08328 0.86223 0.91666 0.92189 0.83537 0.85090 0.89396 0.93803 0.93679 0.92164 0.93858 0.93790 0.78187 0.92327 0.93153 0.91168 0.89770 0.91044 0.91084 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.62 10.50 -92.39 -0.97 -8.59 16 3 C 0.12 2.97 6.69 22.51 0.15 3.13 16 4 C -0.22 -5.06 9.04 22.36 0.20 -4.86 16 5 C -0.08 -1.97 9.46 22.25 0.21 -1.75 16 6 C -0.12 -3.48 4.94 -19.85 -0.10 -3.58 16 7 C 0.09 2.71 4.02 85.56 0.34 3.05 16 8 N -0.51 -19.15 4.59 -887.23 -4.07 -23.22 16 9 C 0.05 2.09 6.00 86.45 0.52 2.61 16 10 C -0.12 -5.66 5.26 31.48 0.17 -5.49 16 11 C 0.24 12.00 0.96 -10.28 -0.01 11.99 16 12 O -0.59 -31.66 13.09 -148.98 -1.95 -33.61 16 13 C -0.56 -30.08 8.15 25.60 0.21 -29.88 16 14 H 0.06 2.97 7.78 -2.91 -0.02 2.95 16 15 C 0.03 1.51 5.28 84.65 0.45 1.96 16 16 N -0.91 -49.38 11.02 21.45 0.24 -49.14 16 17 Si 0.96 42.23 29.54 68.60 2.03 44.26 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 C 0.06 2.58 5.69 86.70 0.49 3.07 16 22 C -0.03 -0.83 5.88 -19.88 -0.12 -0.95 16 23 C -0.12 -2.98 9.26 71.24 0.66 -2.32 16 24 C -0.17 -4.48 9.64 22.37 0.22 -4.27 16 25 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 0.74 7.66 -2.38 -0.02 0.73 16 27 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 28 H 0.15 2.61 6.30 -2.91 -0.02 2.59 16 29 H 0.13 3.00 8.03 -2.91 -0.02 2.98 16 30 H 0.09 2.47 7.25 -2.39 -0.02 2.45 16 31 H 0.04 1.27 7.67 -2.39 -0.02 1.25 16 32 H 0.04 1.58 7.57 -2.39 -0.02 1.57 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.04 2.19 7.99 -2.39 -0.02 2.17 16 35 H 0.04 2.16 7.84 -2.39 -0.02 2.14 16 36 H 0.37 20.37 7.48 -74.06 -0.55 19.81 16 37 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 38 H 0.05 2.05 7.92 -2.39 -0.02 2.03 16 39 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 42 H 0.07 2.14 6.34 -2.38 -0.02 2.12 16 43 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -60.75 344.62 0.22 -60.53 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.45 Total: 35.71 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 4.50 Total: -25.93 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -3.84 Total: -72.36 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -2.92 Total: -42.20 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -60.75 0.22 -60.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895106727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.105 kcal (2) G-P(sol) polarization free energy of solvation -60.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds