Wall clock time and date at job start Tue Mar 31 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 116.99805 * 2 1 4 4 C 1.38753 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94292 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05632 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94179 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47450 * 271.15933 * 7 6 5 9 9 C 1.47436 * 111.00027 * 73.99227 * 8 7 6 10 10 C 1.54322 * 107.23445 * 236.74525 * 9 8 7 11 11 C 1.55141 * 103.17569 * 337.63018 * 10 9 8 12 12 O 1.42900 * 110.98961 * 277.65080 * 11 10 9 13 13 C 1.50698 * 110.99245 * 153.83067 * 11 10 9 14 14 H 1.07996 * 119.99840 * 241.44971 * 13 11 10 15 15 C 1.37870 * 119.99939 * 61.45509 * 13 11 10 16 16 N 1.31513 * 120.00044 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00025 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46904 * 89.99969 * 17 15 13 19 19 H 1.48500 * 109.47135 * 209.99632 * 17 15 13 20 20 H 1.48499 * 109.47137 * 330.00016 * 17 15 13 21 21 C 1.47846 * 110.99537 * 313.14835 * 8 7 6 22 22 C 1.38239 * 120.11574 * 0.25360 * 6 5 4 23 23 C 1.50692 * 119.97544 * 179.70422 * 22 6 5 24 24 C 1.38172 * 120.05269 * 359.45276 * 22 6 5 25 25 H 1.09009 * 109.47181 * 60.00030 * 1 2 3 26 26 H 1.08995 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47038 * 300.00133 * 1 2 3 28 28 H 1.07997 * 120.02629 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.97052 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47403 * 151.15831 * 7 6 5 31 31 H 1.09007 * 109.47301 * 31.16061 * 7 6 5 32 32 H 1.09000 * 109.89167 * 117.34340 * 9 8 7 33 33 H 1.09002 * 109.88896 * 356.14495 * 9 8 7 34 34 H 1.09000 * 110.70708 * 96.09831 * 10 9 8 35 35 H 1.08999 * 110.70887 * 219.15830 * 10 9 8 36 36 H 0.96697 * 113.99875 * 298.54472 * 12 11 10 37 37 H 0.97007 * 120.00074 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.37500 * 265.18633 * 21 8 7 39 39 H 1.08995 * 110.37590 * 27.42590 * 21 8 7 40 40 H 1.09000 * 109.47580 * 88.80486 * 23 22 6 41 41 H 1.09004 * 109.47309 * 208.80958 * 23 22 6 42 42 H 1.09000 * 109.47212 * 328.80478 * 23 22 6 43 43 H 1.08003 * 120.02967 * 180.24640 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0185 -0.0028 8 7 4.1818 5.4672 -1.3878 9 6 2.9087 5.9114 -1.9843 10 6 2.6853 5.0741 -3.2612 11 6 4.1165 4.6013 -3.6289 12 8 4.8212 5.6148 -4.3488 13 6 4.0753 3.3149 -4.4128 14 1 4.5454 2.4266 -4.0178 15 6 3.4376 3.2722 -5.6344 16 7 2.8647 4.3540 -6.1153 17 14 3.3871 1.6779 -6.6065 18 1 2.1772 0.9049 -6.2271 19 1 3.3432 1.9847 -8.0588 20 1 4.6008 0.8765 -6.3063 21 6 4.7394 4.3817 -2.2225 22 6 4.0560 2.5172 -0.0080 23 6 5.5607 2.5982 -0.0164 24 6 3.4311 1.2848 -0.0013 25 1 -0.3634 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2128 2.3204 0.0005 29 1 1.3340 4.5114 0.0008 30 1 4.9537 4.9338 0.4919 31 1 3.3680 5.7417 0.5295 32 1 2.9683 6.9692 -2.2403 33 1 2.0917 5.7427 -1.2827 34 1 2.0389 4.2212 -3.0546 35 1 2.2663 5.6896 -4.0573 36 1 4.4107 5.8573 -5.1900 37 1 2.4157 4.3238 -6.9747 38 1 5.8254 4.4611 -2.2724 39 1 4.4485 3.4096 -1.8247 40 1 5.9283 2.6374 1.0090 41 1 5.9691 1.7195 -0.5156 42 1 5.8732 3.4965 -0.5489 43 1 4.0207 0.3799 -0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895106728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:52 Heat of formation + Delta-G solvation = -48.690747 kcal Electronic energy + Delta-G solvation = -24826.896258 eV Core-core repulsion = 21451.628908 eV Total energy + Delta-G solvation = -3375.267350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37125 -38.84288 -37.03860 -34.59529 -32.54937 -32.07527 -31.18734 -29.12353 -28.05705 -27.44873 -26.42653 -25.15660 -23.82339 -21.86412 -20.81279 -19.74513 -19.26681 -17.59594 -17.02163 -16.30443 -15.66126 -15.49248 -14.92725 -14.79342 -14.76843 -14.13053 -13.94794 -13.52139 -13.34281 -13.05751 -12.88904 -12.33548 -12.15561 -12.05680 -11.95850 -11.74660 -11.59809 -11.25763 -11.13126 -10.85559 -10.75638 -10.70238 -10.64532 -10.53905 -10.34636 -10.17072 -9.75156 -9.08028 -8.54221 -8.52166 -8.02765 -7.85721 -7.50507 -6.15609 -4.22457 1.56345 1.66428 3.24413 3.31351 3.35991 3.37262 3.94146 4.33999 4.83645 4.90505 5.02465 5.09171 5.12988 5.15987 5.21932 5.39832 5.44067 5.49273 5.55099 5.76006 5.79548 5.84149 5.93550 6.03531 6.11038 6.15056 6.23450 6.29723 6.35355 6.51985 6.57042 6.62485 6.76573 6.87416 6.97019 6.99095 7.15845 7.50829 7.55755 7.56183 7.69192 7.81881 7.88730 8.24719 8.79565 9.45589 9.57975 10.91335 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.007222 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.786238 B = 3875.978173 C = 5032.402604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.126 3.874 4 C -0.212 4.212 5 C -0.065 4.065 6 C -0.145 4.145 7 C 0.087 3.913 8 N -0.516 5.516 9 C 0.040 3.960 10 C -0.140 4.140 11 C 0.253 3.747 12 O -0.581 6.581 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.041 3.959 22 C -0.029 4.029 23 C -0.130 4.130 24 C -0.152 4.152 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.375 0.625 37 H 0.265 0.735 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 -3.436 12.915 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.081 3.919 4 C -0.231 4.231 5 C -0.083 4.083 6 C -0.147 4.147 7 C -0.041 4.041 8 N -0.238 5.238 9 C -0.088 4.088 10 C -0.180 4.180 11 C 0.213 3.787 12 O -0.388 6.388 13 C -0.568 4.568 14 H 0.077 0.923 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.085 4.085 22 C -0.030 4.030 23 C -0.186 4.186 24 C -0.171 4.171 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.224 0.776 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.799 -3.148 13.297 13.948 hybrid contribution -1.620 -1.469 -1.211 2.500 sum -4.419 -4.617 12.086 13.672 Atomic orbital electron populations 1.23001 0.78797 1.03523 1.01314 1.86035 1.21095 1.27297 1.88993 1.18928 0.92261 0.83892 0.96771 1.21100 0.99590 0.92445 1.09919 1.20782 0.93916 0.96733 0.96905 1.20388 0.93790 0.96633 1.03891 1.21385 0.99456 0.90581 0.92669 1.63984 1.24588 1.34621 1.00633 1.22892 0.89548 0.99763 0.96590 1.23201 1.01144 0.98413 0.95197 1.19622 0.85880 0.86182 0.87052 1.86143 1.55496 1.59571 1.37616 1.21515 1.35171 0.96133 1.03935 0.92293 1.24964 0.94221 0.96579 0.97262 1.69744 1.36434 1.27756 1.19623 0.86545 0.78548 0.83566 0.79085 1.20689 1.21072 1.19714 1.23561 0.98918 0.92864 0.93195 1.19492 0.96029 0.91585 0.95892 1.21170 0.90801 1.04378 1.02241 1.20212 0.91232 0.98004 1.07620 0.92583 0.88574 0.92935 0.85966 0.86168 0.90305 0.90999 0.91857 0.94374 0.92845 0.90800 0.77569 0.92532 0.91568 0.90999 0.91322 0.91293 0.89490 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.79 10.50 -19.44 -0.20 -5.00 16 3 C 0.13 2.04 6.69 -39.22 -0.26 1.78 16 4 C -0.21 -3.23 9.04 -39.43 -0.36 -3.59 16 5 C -0.06 -1.02 8.81 -39.61 -0.35 -1.37 16 6 C -0.15 -2.36 4.11 -104.61 -0.43 -2.79 16 7 C 0.09 1.39 5.16 -4.98 -0.03 1.36 16 8 N -0.52 -10.06 5.41 -232.37 -1.26 -11.32 16 9 C 0.04 0.79 6.41 -2.84 -0.02 0.77 16 10 C -0.14 -3.31 5.36 -24.91 -0.13 -3.44 16 11 C 0.25 6.39 0.88 -89.38 -0.08 6.31 16 12 O -0.58 -15.49 13.16 -35.23 -0.46 -15.96 16 13 C -0.53 -14.50 8.29 -34.44 -0.29 -14.79 16 14 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 15 C 0.07 1.94 5.29 -17.82 -0.09 1.85 16 16 N -0.90 -24.34 10.74 55.43 0.60 -23.75 16 17 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.04 0.90 4.03 -2.04 -0.01 0.89 16 22 C -0.03 -0.47 4.37 -104.65 -0.46 -0.92 16 23 C -0.13 -1.81 8.41 36.00 0.30 -1.51 16 24 C -0.15 -2.46 9.64 -39.43 -0.38 -2.84 16 25 H 0.06 0.60 7.66 -51.92 -0.40 0.21 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 28 H 0.12 1.57 6.30 -52.49 -0.33 1.24 16 29 H 0.12 1.71 6.82 -52.48 -0.36 1.36 16 30 H 0.08 1.15 6.67 -51.93 -0.35 0.80 16 31 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.04 0.67 5.39 -51.93 -0.28 0.39 16 34 H 0.05 1.32 8.03 -51.93 -0.42 0.90 16 35 H 0.07 1.85 7.53 -51.93 -0.39 1.46 16 36 H 0.38 10.08 7.57 45.56 0.34 10.42 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.07 1.48 7.60 -51.93 -0.39 1.09 16 39 H 0.07 1.54 3.55 -51.93 -0.18 1.36 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 42 H 0.09 1.33 4.23 -51.93 -0.22 1.11 16 43 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -29.68 330.50 -8.39 -38.07 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -5.44 Total: 13.74 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -1.58 Total: -17.00 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.66 Total: -35.06 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.67 Total: -20.95 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.68 -8.39 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895106728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.621 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds