Wall clock time and date at job start Tue Mar 31 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 116.99805 * 2 1 4 4 C 1.38753 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94292 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05632 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94179 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47450 * 271.15933 * 7 6 5 9 9 C 1.47436 * 111.00027 * 73.99227 * 8 7 6 10 10 C 1.54322 * 107.23445 * 236.74525 * 9 8 7 11 11 C 1.55141 * 103.17569 * 337.63018 * 10 9 8 12 12 O 1.42900 * 110.98961 * 277.65080 * 11 10 9 13 13 C 1.50698 * 110.99245 * 153.83067 * 11 10 9 14 14 H 1.07996 * 119.99840 * 241.44971 * 13 11 10 15 15 C 1.37870 * 119.99939 * 61.45509 * 13 11 10 16 16 N 1.31513 * 120.00044 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00025 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46904 * 89.99969 * 17 15 13 19 19 H 1.48500 * 109.47135 * 209.99632 * 17 15 13 20 20 H 1.48499 * 109.47137 * 330.00016 * 17 15 13 21 21 C 1.47846 * 110.99537 * 313.14835 * 8 7 6 22 22 C 1.38239 * 120.11574 * 0.25360 * 6 5 4 23 23 C 1.50692 * 119.97544 * 179.70422 * 22 6 5 24 24 C 1.38172 * 120.05269 * 359.45276 * 22 6 5 25 25 H 1.09009 * 109.47181 * 60.00030 * 1 2 3 26 26 H 1.08995 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47038 * 300.00133 * 1 2 3 28 28 H 1.07997 * 120.02629 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.97052 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47403 * 151.15831 * 7 6 5 31 31 H 1.09007 * 109.47301 * 31.16061 * 7 6 5 32 32 H 1.09000 * 109.89167 * 117.34340 * 9 8 7 33 33 H 1.09002 * 109.88896 * 356.14495 * 9 8 7 34 34 H 1.09000 * 110.70708 * 96.09831 * 10 9 8 35 35 H 1.08999 * 110.70887 * 219.15830 * 10 9 8 36 36 H 0.96697 * 113.99875 * 298.54472 * 12 11 10 37 37 H 0.97007 * 120.00074 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.37500 * 265.18633 * 21 8 7 39 39 H 1.08995 * 110.37590 * 27.42590 * 21 8 7 40 40 H 1.09000 * 109.47580 * 88.80486 * 23 22 6 41 41 H 1.09004 * 109.47309 * 208.80958 * 23 22 6 42 42 H 1.09000 * 109.47212 * 328.80478 * 23 22 6 43 43 H 1.08003 * 120.02967 * 180.24640 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0185 -0.0028 8 7 4.1818 5.4672 -1.3878 9 6 2.9087 5.9114 -1.9843 10 6 2.6853 5.0741 -3.2612 11 6 4.1165 4.6013 -3.6289 12 8 4.8212 5.6148 -4.3488 13 6 4.0753 3.3149 -4.4128 14 1 4.5454 2.4266 -4.0178 15 6 3.4376 3.2722 -5.6344 16 7 2.8647 4.3540 -6.1153 17 14 3.3871 1.6779 -6.6065 18 1 2.1772 0.9049 -6.2271 19 1 3.3432 1.9847 -8.0588 20 1 4.6008 0.8765 -6.3063 21 6 4.7394 4.3817 -2.2225 22 6 4.0560 2.5172 -0.0080 23 6 5.5607 2.5982 -0.0164 24 6 3.4311 1.2848 -0.0013 25 1 -0.3634 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2128 2.3204 0.0005 29 1 1.3340 4.5114 0.0008 30 1 4.9537 4.9338 0.4919 31 1 3.3680 5.7417 0.5295 32 1 2.9683 6.9692 -2.2403 33 1 2.0917 5.7427 -1.2827 34 1 2.0389 4.2212 -3.0546 35 1 2.2663 5.6896 -4.0573 36 1 4.4107 5.8573 -5.1900 37 1 2.4157 4.3238 -6.9747 38 1 5.8254 4.4611 -2.2724 39 1 4.4485 3.4096 -1.8247 40 1 5.9283 2.6374 1.0090 41 1 5.9691 1.7195 -0.5156 42 1 5.8732 3.4965 -0.5489 43 1 4.0207 0.3799 -0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895106728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:51 Heat of formation + Delta-G solvation = -69.445260 kcal Electronic energy + Delta-G solvation = -24827.796241 eV Core-core repulsion = 21451.628908 eV Total energy + Delta-G solvation = -3376.167333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61972 -40.20165 -38.49354 -36.33963 -34.17154 -33.73172 -32.64198 -30.56115 -29.77009 -28.70859 -27.50123 -26.82878 -25.38427 -23.11477 -22.18609 -21.52803 -20.78715 -19.03733 -18.69752 -17.49321 -16.94937 -16.92017 -16.70280 -16.38602 -16.30079 -15.66053 -15.30566 -14.87247 -14.74924 -14.39005 -14.22197 -13.93033 -13.67465 -13.46753 -13.25753 -13.08272 -13.02844 -12.83677 -12.72066 -12.59398 -12.37156 -12.32580 -12.14572 -11.98830 -11.80881 -11.74979 -11.47564 -11.00758 -10.58339 -10.05205 -9.70982 -9.18311 -8.93209 -8.21404 -6.35518 0.37902 0.45261 1.35004 1.37523 1.46992 2.36039 2.36435 2.73720 3.03060 3.33568 3.78059 3.87829 3.98403 4.05043 4.15991 4.17851 4.28739 4.33200 4.35224 4.42776 4.45931 4.53572 4.65713 4.71115 4.78282 4.81763 4.86745 4.92479 4.95639 5.08533 5.13712 5.21789 5.32714 5.36219 5.44791 5.52982 5.58050 5.67307 5.83208 5.85016 6.01811 6.27171 6.33779 6.45320 6.69490 7.35332 7.47824 8.83674 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.007222 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.786238 B = 3875.978173 C = 5032.402604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.116 3.884 4 C -0.219 4.219 5 C -0.073 4.073 6 C -0.160 4.160 7 C 0.088 3.912 8 N -0.520 5.520 9 C 0.048 3.952 10 C -0.128 4.128 11 C 0.234 3.766 12 O -0.589 6.589 13 C -0.553 4.553 14 H 0.047 0.953 15 C 0.033 3.967 16 N -0.910 5.910 17 Si 0.950 3.050 18 H -0.278 1.278 19 H -0.278 1.278 20 H -0.273 1.273 21 C 0.054 3.946 22 C -0.039 4.039 23 C -0.127 4.127 24 C -0.172 4.172 25 H 0.053 0.947 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.135 0.865 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.370 0.630 37 H 0.267 0.733 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 -3.831 14.089 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.071 3.929 4 C -0.237 4.237 5 C -0.091 4.091 6 C -0.162 4.162 7 C -0.039 4.039 8 N -0.242 5.242 9 C -0.079 4.079 10 C -0.168 4.168 11 C 0.194 3.806 12 O -0.396 6.396 13 C -0.592 4.592 14 H 0.066 0.934 15 C -0.168 4.168 16 N -0.549 5.549 17 Si 0.775 3.225 18 H -0.204 1.204 19 H -0.203 1.203 20 H -0.197 1.197 21 C -0.073 4.073 22 C -0.039 4.039 23 C -0.183 4.183 24 C -0.191 4.191 25 H 0.071 0.929 26 H 0.139 0.861 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.153 0.847 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.218 0.782 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.485 -3.541 14.487 15.315 hybrid contribution -1.452 -1.396 -1.557 2.546 sum -4.937 -4.937 12.930 14.694 Atomic orbital electron populations 1.23308 0.76690 1.05491 1.01971 1.86015 1.23340 1.26932 1.88830 1.19151 0.92561 0.84656 0.96536 1.21370 1.00784 0.92089 1.09494 1.21045 0.94014 0.97539 0.96529 1.20477 0.94199 0.96711 1.04778 1.21497 1.00876 0.91003 0.90523 1.63917 1.24312 1.34003 1.01990 1.22808 0.90733 0.99007 0.95391 1.22953 0.99571 0.97817 0.96413 1.19894 0.87276 0.85159 0.88257 1.86140 1.56009 1.60020 1.37453 1.21751 1.35713 0.96764 1.04947 0.93431 1.25602 0.93879 0.99307 0.97994 1.69823 1.36356 1.28928 1.19804 0.85692 0.78388 0.80312 0.78072 1.20363 1.20294 1.19744 1.23366 0.98223 0.93971 0.91734 1.19754 0.97018 0.91615 0.95558 1.21160 0.89757 1.03701 1.03711 1.20451 0.91820 0.98487 1.08303 0.92872 0.86102 0.91230 0.83880 0.84719 0.88827 0.88804 0.91702 0.91728 0.94595 0.92979 0.78219 0.92336 0.92507 0.90543 0.88713 0.91174 0.90799 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.34 -9.69 10.50 -92.49 -0.97 -10.66 16 3 C 0.12 3.64 6.69 22.51 0.15 3.79 16 4 C -0.22 -6.33 9.04 22.36 0.20 -6.13 16 5 C -0.07 -2.15 8.81 22.25 0.20 -1.95 16 6 C -0.16 -4.93 4.11 -19.85 -0.08 -5.01 16 7 C 0.09 2.60 5.16 85.56 0.44 3.04 16 8 N -0.52 -19.50 5.41 -889.09 -4.81 -24.31 16 9 C 0.05 1.85 6.41 86.65 0.56 2.40 16 10 C -0.13 -6.06 5.36 31.78 0.17 -5.89 16 11 C 0.23 11.93 0.88 -9.99 -0.01 11.93 16 12 O -0.59 -31.90 13.16 -148.98 -1.96 -33.86 16 13 C -0.55 -30.74 8.29 25.60 0.21 -30.53 16 14 H 0.05 2.67 7.79 -2.91 -0.02 2.65 16 15 C 0.03 1.78 5.29 84.65 0.45 2.23 16 16 N -0.91 -49.78 10.74 21.44 0.23 -49.55 16 17 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 C 0.05 2.36 4.03 86.94 0.35 2.71 16 22 C -0.04 -1.19 4.37 -19.88 -0.09 -1.28 16 23 C -0.13 -3.40 8.41 71.23 0.60 -2.80 16 24 C -0.17 -5.46 9.64 22.37 0.22 -5.24 16 25 H 0.05 1.06 7.66 -2.38 -0.02 1.04 16 26 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.10 7.66 -2.39 -0.02 1.09 16 28 H 0.14 3.38 6.30 -2.91 -0.02 3.37 16 29 H 0.14 3.48 6.82 -2.91 -0.02 3.46 16 30 H 0.09 2.48 6.67 -2.39 -0.02 2.47 16 31 H 0.09 2.36 7.87 -2.38 -0.02 2.34 16 32 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.06 2.12 5.39 -2.39 -0.01 2.11 16 34 H 0.04 1.78 8.03 -2.39 -0.02 1.76 16 35 H 0.05 2.64 7.53 -2.39 -0.02 2.62 16 36 H 0.37 20.32 7.57 -74.06 -0.56 19.76 16 37 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 38 H 0.06 2.55 7.60 -2.39 -0.02 2.53 16 39 H 0.08 3.26 3.55 -2.39 -0.01 3.25 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 42 H 0.07 2.18 4.23 -2.39 -0.01 2.17 16 43 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -63.16 330.50 -0.54 -63.70 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: 0.47 Total: 40.35 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 4.48 Total: -31.26 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -4.58 Total: -73.86 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.93 Total: -44.51 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -63.16 -0.54 -63.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895106728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.742 kcal (2) G-P(sol) polarization free energy of solvation -63.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds