Wall clock time and date at job start Tue Mar 31 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34714 * 116.99590 * 2 1 4 4 O 1.21465 * 120.00262 * 0.02562 * 3 2 1 5 5 C 1.47750 * 119.99883 * 179.97438 * 3 2 1 6 6 C 1.39670 * 120.11357 * 0.02562 * 5 3 2 7 7 C 1.37961 * 119.99851 * 179.97438 * 6 5 3 8 8 C 1.50702 * 119.88180 * 180.02562 * 7 6 5 9 9 C 1.38258 * 120.23369 * 359.97438 * 7 6 5 10 10 C 1.38980 * 120.23089 * 0.02562 * 9 7 6 11 11 N 1.39715 * 120.00435 * 179.97438 * 10 9 7 12 12 C 1.46493 * 120.00406 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47217 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.47104 * 55.00421 * 13 12 11 15 15 C 1.52998 * 109.47026 * 294.99617 * 13 12 11 16 16 C 1.53002 * 109.46886 * 174.99768 * 13 12 11 17 17 C 1.50706 * 109.47153 * 184.99546 * 16 13 12 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 C 1.38675 * 119.99734 * 0.25760 * 10 9 7 26 26 H 1.09004 * 109.47104 * 60.00282 * 1 2 3 27 27 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47282 * 300.00040 * 1 2 3 29 29 H 1.08000 * 119.99601 * 359.97438 * 6 5 3 30 30 H 1.09001 * 109.47001 * 269.97719 * 8 7 6 31 31 H 1.08994 * 109.47114 * 29.97563 * 8 7 6 32 32 H 1.08996 * 109.46887 * 149.98011 * 8 7 6 33 33 H 1.08001 * 119.88147 * 179.97438 * 9 7 6 34 34 H 0.97003 * 119.99677 * 0.02562 * 11 10 9 35 35 H 1.09001 * 109.47299 * 60.00304 * 12 11 10 36 36 H 1.09002 * 109.47069 * 300.00472 * 12 11 10 37 37 H 1.09001 * 109.46970 * 60.00396 * 15 13 12 38 38 H 1.09003 * 109.46843 * 179.97438 * 15 13 12 39 39 H 1.08990 * 109.47503 * 300.00380 * 15 13 12 40 40 H 1.09004 * 109.47178 * 65.00336 * 16 13 12 41 41 H 1.08993 * 109.47411 * 305.00018 * 16 13 12 42 42 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 43 43 H 1.07995 * 120.11427 * 179.70516 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2778 0.0006 6 6 4.3021 0.1079 0.0006 7 6 5.6796 0.1830 0.0006 8 6 6.5004 -1.0809 0.0000 9 6 6.3098 1.4136 0.0000 10 6 5.5599 2.5837 0.0000 11 7 6.2016 3.8248 0.0000 12 6 5.4112 5.0582 0.0006 13 6 6.3505 6.2659 -0.0002 14 1 7.0382 6.1908 -0.8425 15 6 7.1458 6.2943 1.3066 16 6 5.5292 7.5507 -0.1254 17 6 6.4582 8.7308 -0.2496 18 1 7.5275 8.5794 -0.2405 19 6 5.9432 10.0035 -0.3747 20 7 4.6410 10.1873 -0.3910 21 14 7.0947 11.4662 -0.5293 22 1 6.2976 12.7126 -0.6568 23 1 7.9541 11.5496 0.6790 24 1 7.9481 11.2992 -1.7330 25 6 4.1747 2.5195 0.0060 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.8137 -0.8553 0.0006 30 1 6.6987 -1.3859 1.0275 31 1 5.9517 -1.8702 -0.5138 32 1 7.4445 -0.9008 -0.5141 33 1 7.3886 1.4657 0.0005 34 1 7.1706 3.8697 -0.0003 35 1 4.7829 5.0867 0.8909 36 1 4.7822 5.0870 -0.8891 37 1 7.7309 5.3790 1.3957 38 1 7.8153 7.1545 1.3058 39 1 6.4581 6.3694 2.1489 40 1 4.9055 7.6710 0.7605 41 1 4.8957 7.4922 -1.0104 42 1 4.0430 9.4278 -0.3110 43 1 3.5902 3.4276 0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897088290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:10 Heat of formation + Delta-G solvation = -86.504643 kcal Electronic energy + Delta-G solvation = -22436.035538 eV Core-core repulsion = 19059.128454 eV Total energy + Delta-G solvation = -3376.907083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66997 -39.34860 -36.95652 -36.53837 -34.45802 -32.69754 -32.24752 -29.63121 -27.95649 -27.03725 -26.56641 -25.67233 -24.20222 -22.88183 -21.17721 -20.48809 -19.50027 -17.95915 -17.18569 -16.79523 -16.47859 -16.23545 -15.95660 -15.18097 -14.74872 -14.06607 -13.95696 -13.87906 -13.73252 -13.47429 -13.42532 -13.17851 -12.95447 -12.48262 -12.25573 -12.12220 -11.86083 -11.81623 -11.58653 -11.27304 -11.12810 -10.97740 -10.80024 -10.60500 -10.43840 -10.18484 -10.11177 -9.83469 -9.63082 -8.89718 -8.55281 -8.33999 -7.38605 -6.36265 -4.05764 0.66844 1.46836 2.51413 2.51638 3.42629 3.44448 3.56147 3.63364 3.77312 4.52151 4.53824 4.67312 4.89367 4.97786 5.06727 5.10008 5.19021 5.29274 5.33265 5.39263 5.41975 5.43497 5.54088 5.55803 5.71344 5.76375 5.82979 6.06731 6.08703 6.22057 6.26061 6.28794 6.31403 6.44011 6.63368 6.73993 6.84190 6.92952 7.32222 7.36481 7.48009 7.63421 7.81764 8.18718 8.44588 8.87333 9.66034 11.04188 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.003066 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.141064 B = 9131.182127 C =10471.988519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.508 3.492 4 O -0.501 6.501 5 C -0.076 4.076 6 C -0.132 4.132 7 C -0.054 4.054 8 C -0.112 4.112 9 C -0.169 4.169 10 C 0.219 3.781 11 N -0.737 5.737 12 C 0.122 3.878 13 C -0.088 4.088 14 H 0.064 0.936 15 C -0.131 4.131 16 C 0.016 3.984 17 C -0.598 4.598 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.913 5.913 21 Si 1.068 2.932 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.288 1.288 25 C -0.141 4.141 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.131 0.869 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.401 0.599 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.010 0.990 41 H 0.008 0.992 42 H 0.269 0.731 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 -24.540 1.401 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.389 6.389 5 C -0.078 4.078 6 C -0.152 4.152 7 C -0.054 4.054 8 C -0.169 4.169 9 C -0.192 4.192 10 C 0.113 3.887 11 N -0.365 5.365 12 C -0.002 4.002 13 C -0.107 4.107 14 H 0.082 0.918 15 C -0.189 4.189 16 C -0.021 4.021 17 C -0.636 4.636 18 H 0.068 0.932 19 C -0.190 4.190 20 N -0.549 5.549 21 Si 0.896 3.104 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.215 1.215 25 C -0.164 4.164 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.236 0.764 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.079 0.921 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.589 -22.390 1.232 22.432 hybrid contribution 0.045 -1.513 0.170 1.523 sum -0.544 -23.903 1.402 23.950 Atomic orbital electron populations 1.23276 0.76135 1.03623 1.02750 1.86543 1.23414 1.32765 1.84486 1.21341 0.89334 0.81340 0.72739 1.90859 1.66804 1.36012 1.45268 1.18711 0.88282 0.94462 1.06334 1.20948 0.93007 0.97372 1.03879 1.19534 0.93418 0.94643 0.97854 1.20782 0.99285 0.94402 1.02429 1.20698 0.99567 0.90672 1.08252 1.17673 0.91224 0.86307 0.93509 1.44980 1.08576 1.02354 1.80543 1.21701 0.94650 0.83031 1.00790 1.21291 0.97157 0.94356 0.97887 0.91773 1.21714 0.99857 1.00173 0.97120 1.19210 0.95404 0.91337 0.96154 1.21981 0.93742 0.92821 1.55077 0.93199 1.25828 0.98531 1.00663 0.93959 1.70778 1.02692 1.35021 1.46387 0.83562 0.74630 0.75776 0.76441 1.20779 1.21486 1.21495 1.20729 0.92815 0.97337 1.05502 0.91797 0.88037 0.91801 0.85143 0.91034 0.91362 0.91466 0.85744 0.76414 0.92435 0.92412 0.94948 0.91584 0.93512 0.97191 0.97337 0.92053 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.09 9.81 -40.53 -0.40 -4.48 16 3 C 0.51 7.18 7.90 34.62 0.27 7.45 16 4 O -0.50 -8.49 16.13 -19.24 -0.31 -8.80 16 5 C -0.08 -1.04 5.87 -105.00 -0.62 -1.65 16 6 C -0.13 -1.49 9.26 -39.15 -0.36 -1.85 16 7 C -0.05 -0.56 5.87 -104.71 -0.61 -1.17 16 8 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 9 C -0.17 -1.92 9.53 -39.30 -0.37 -2.30 16 10 C 0.22 2.99 6.65 -83.83 -0.56 2.44 16 11 N -0.74 -10.40 5.46 -58.67 -0.32 -10.72 16 12 C 0.12 2.05 4.30 -4.05 -0.02 2.04 16 13 C -0.09 -1.71 2.37 -90.62 -0.22 -1.93 16 14 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.13 -2.37 8.88 37.16 0.33 -2.04 16 16 C 0.02 0.41 3.76 -27.88 -0.10 0.30 16 17 C -0.60 -16.61 8.41 -34.44 -0.29 -16.89 16 18 H 0.05 1.35 7.06 -52.49 -0.37 0.98 16 19 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 20 N -0.91 -28.04 13.65 55.43 0.76 -27.28 16 21 Si 1.07 25.21 29.90 -169.99 -5.08 20.13 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.14 -2.09 8.86 -38.95 -0.34 -2.43 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.13 1.24 7.60 -52.49 -0.40 0.84 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.40 5.05 7.66 -40.82 -0.31 4.74 16 35 H 0.06 1.00 7.94 -51.93 -0.41 0.58 16 36 H 0.06 1.02 7.96 -51.93 -0.41 0.60 16 37 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 38 H 0.07 1.30 6.95 -51.93 -0.36 0.93 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.01 0.26 8.01 -51.93 -0.42 -0.16 16 41 H 0.01 0.22 8.00 -51.93 -0.42 -0.19 16 42 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 43 H 0.14 2.22 6.32 -52.49 -0.33 1.89 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -32.19 358.93 -8.20 -40.39 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.69 Total: 2.16 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.56 Total: -16.81 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.44 Total: -38.00 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.71 Total: -13.29 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.19 -8.20 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897088290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.111 kcal (2) G-P(sol) polarization free energy of solvation -32.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds