Wall clock time and date at job start Tue Mar 31 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34714 * 116.99590 * 2 1 4 4 O 1.21465 * 120.00262 * 0.02562 * 3 2 1 5 5 C 1.47750 * 119.99883 * 179.97438 * 3 2 1 6 6 C 1.39670 * 120.11357 * 0.02562 * 5 3 2 7 7 C 1.37961 * 119.99851 * 179.97438 * 6 5 3 8 8 C 1.50702 * 119.88180 * 180.02562 * 7 6 5 9 9 C 1.38258 * 120.23369 * 359.97438 * 7 6 5 10 10 C 1.38980 * 120.23089 * 0.02562 * 9 7 6 11 11 N 1.39715 * 120.00435 * 179.97438 * 10 9 7 12 12 C 1.46493 * 120.00406 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47217 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.47104 * 55.00421 * 13 12 11 15 15 C 1.52998 * 109.47026 * 294.99617 * 13 12 11 16 16 C 1.53002 * 109.46886 * 174.99768 * 13 12 11 17 17 C 1.50706 * 109.47153 * 184.99546 * 16 13 12 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 13 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 C 1.38675 * 119.99734 * 0.25760 * 10 9 7 26 26 H 1.09004 * 109.47104 * 60.00282 * 1 2 3 27 27 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47282 * 300.00040 * 1 2 3 29 29 H 1.08000 * 119.99601 * 359.97438 * 6 5 3 30 30 H 1.09001 * 109.47001 * 269.97719 * 8 7 6 31 31 H 1.08994 * 109.47114 * 29.97563 * 8 7 6 32 32 H 1.08996 * 109.46887 * 149.98011 * 8 7 6 33 33 H 1.08001 * 119.88147 * 179.97438 * 9 7 6 34 34 H 0.97003 * 119.99677 * 0.02562 * 11 10 9 35 35 H 1.09001 * 109.47299 * 60.00304 * 12 11 10 36 36 H 1.09002 * 109.47069 * 300.00472 * 12 11 10 37 37 H 1.09001 * 109.46970 * 60.00396 * 15 13 12 38 38 H 1.09003 * 109.46843 * 179.97438 * 15 13 12 39 39 H 1.08990 * 109.47503 * 300.00380 * 15 13 12 40 40 H 1.09004 * 109.47178 * 65.00336 * 16 13 12 41 41 H 1.08993 * 109.47411 * 305.00018 * 16 13 12 42 42 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 43 43 H 1.07995 * 120.11427 * 179.70516 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2778 0.0006 6 6 4.3021 0.1079 0.0006 7 6 5.6796 0.1830 0.0006 8 6 6.5004 -1.0809 0.0000 9 6 6.3098 1.4136 0.0000 10 6 5.5599 2.5837 0.0000 11 7 6.2016 3.8248 0.0000 12 6 5.4112 5.0582 0.0006 13 6 6.3505 6.2659 -0.0002 14 1 7.0382 6.1908 -0.8425 15 6 7.1458 6.2943 1.3066 16 6 5.5292 7.5507 -0.1254 17 6 6.4582 8.7308 -0.2496 18 1 7.5275 8.5794 -0.2405 19 6 5.9432 10.0035 -0.3747 20 7 4.6410 10.1873 -0.3910 21 14 7.0947 11.4662 -0.5293 22 1 6.2976 12.7126 -0.6568 23 1 7.9541 11.5496 0.6790 24 1 7.9481 11.2992 -1.7330 25 6 4.1747 2.5195 0.0060 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.8137 -0.8553 0.0006 30 1 6.6987 -1.3859 1.0275 31 1 5.9517 -1.8702 -0.5138 32 1 7.4445 -0.9008 -0.5141 33 1 7.3886 1.4657 0.0005 34 1 7.1706 3.8697 -0.0003 35 1 4.7829 5.0867 0.8909 36 1 4.7822 5.0870 -0.8891 37 1 7.7309 5.3790 1.3957 38 1 7.8153 7.1545 1.3058 39 1 6.4581 6.3694 2.1489 40 1 4.9055 7.6710 0.7605 41 1 4.8957 7.4922 -1.0104 42 1 4.0430 9.4278 -0.3110 43 1 3.5902 3.4276 0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897088290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:10 Heat of formation + Delta-G solvation = -104.707250 kcal Electronic energy + Delta-G solvation = -22436.824862 eV Core-core repulsion = 19059.128454 eV Total energy + Delta-G solvation = -3377.696408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70467 -40.37084 -38.36176 -37.58455 -36.01764 -34.19170 -33.51732 -30.81793 -28.80218 -28.46564 -27.78654 -27.07342 -25.22042 -24.79097 -22.23100 -21.68851 -20.91021 -19.07636 -18.83412 -18.22883 -17.46272 -17.28247 -16.94887 -16.39730 -16.14473 -15.65948 -15.44245 -15.02916 -14.90561 -14.66464 -14.39759 -14.19933 -14.17931 -13.73746 -13.51856 -13.16628 -13.04737 -12.98704 -12.93189 -12.63068 -12.54534 -12.27032 -12.04714 -11.96220 -11.88777 -11.79930 -11.66567 -11.45000 -11.05296 -10.64692 -10.54630 -9.81230 -8.67557 -8.47356 -6.37658 -0.34976 0.51267 1.46655 1.51802 1.59000 1.60483 1.79085 2.39774 2.58000 2.79424 3.16942 3.61651 3.80871 3.90205 4.01194 4.11798 4.20288 4.23655 4.28622 4.30645 4.40113 4.42707 4.60179 4.61563 4.68067 4.69566 4.75822 4.92516 4.95114 4.98116 5.10643 5.14816 5.23645 5.25892 5.28344 5.31002 5.36777 5.54631 5.58009 5.77546 5.99348 6.19125 6.21900 6.57681 6.59353 6.79644 7.44326 8.72988 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.003066 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.141064 B = 9131.182127 C =10471.988519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.508 3.492 4 O -0.542 6.542 5 C -0.094 4.094 6 C -0.119 4.119 7 C -0.049 4.049 8 C -0.110 4.110 9 C -0.158 4.158 10 C 0.204 3.796 11 N -0.733 5.733 12 C 0.141 3.859 13 C -0.077 4.077 14 H 0.067 0.933 15 C -0.124 4.124 16 C 0.016 3.984 17 C -0.605 4.605 18 H 0.058 0.942 19 C -0.044 4.044 20 N -0.942 5.942 21 Si 1.117 2.883 22 H -0.287 1.287 23 H -0.267 1.267 24 H -0.268 1.268 25 C -0.168 4.168 26 H 0.059 0.941 27 H 0.142 0.858 28 H 0.060 0.940 29 H 0.153 0.847 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.411 0.589 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.038 0.962 40 H -0.013 1.013 41 H -0.017 1.017 42 H 0.253 0.747 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -27.418 1.555 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.355 3.645 4 O -0.434 6.434 5 C -0.096 4.096 6 C -0.139 4.139 7 C -0.050 4.050 8 C -0.167 4.167 9 C -0.180 4.180 10 C 0.100 3.900 11 N -0.363 5.363 12 C 0.016 3.984 13 C -0.096 4.096 14 H 0.085 0.915 15 C -0.181 4.181 16 C -0.021 4.021 17 C -0.643 4.643 18 H 0.076 0.924 19 C -0.241 4.241 20 N -0.580 5.580 21 Si 0.938 3.062 22 H -0.213 1.213 23 H -0.192 1.192 24 H -0.193 1.193 25 C -0.191 4.191 26 H 0.078 0.922 27 H 0.160 0.840 28 H 0.079 0.921 29 H 0.171 0.829 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.170 0.830 34 H 0.248 0.752 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.005 0.995 41 H 0.001 0.999 42 H 0.063 0.937 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.982 -25.346 1.390 25.461 hybrid contribution -0.817 -0.805 0.119 1.153 sum 1.165 -26.151 1.508 26.220 Atomic orbital electron populations 1.23622 0.74314 1.06144 1.02463 1.86529 1.25170 1.31098 1.83755 1.21569 0.89721 0.81502 0.71741 1.90836 1.67685 1.37446 1.47435 1.18818 0.88263 0.94955 1.07529 1.21263 0.93554 0.97235 1.01874 1.19982 0.93307 0.95803 0.95877 1.20871 0.99373 0.92722 1.03717 1.21036 1.00818 0.89914 1.06268 1.17793 0.90861 0.86761 0.94590 1.44636 1.08644 1.01485 1.81565 1.21217 0.93951 0.83651 0.99609 1.21073 0.96825 0.92588 0.99082 0.91459 1.21626 0.99422 1.01450 0.95581 1.19149 0.95195 0.93922 0.93856 1.22406 0.94515 0.93668 1.53686 0.92364 1.27447 0.99059 1.04422 0.93130 1.70919 1.03751 1.34352 1.49017 0.82943 0.73146 0.72074 0.78039 1.21298 1.19190 1.19301 1.20638 0.93573 0.97018 1.07921 0.92182 0.84031 0.92137 0.82918 0.89629 0.89958 0.90148 0.83048 0.75214 0.93556 0.94088 0.91029 0.93154 0.94318 0.99479 0.99866 0.93738 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -7.75 9.81 -56.24 -0.55 -8.30 16 3 C 0.51 14.75 7.90 70.34 0.56 15.31 16 4 O -0.54 -19.61 16.13 19.95 0.32 -19.28 16 5 C -0.09 -2.57 5.87 -20.11 -0.12 -2.69 16 6 C -0.12 -2.42 9.26 22.55 0.21 -2.21 16 7 C -0.05 -0.85 5.87 -19.92 -0.12 -0.97 16 8 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 9 C -0.16 -3.14 9.53 22.45 0.21 -2.92 16 10 C 0.20 5.45 6.65 38.17 0.25 5.70 16 11 N -0.73 -20.22 5.46 -339.54 -1.85 -22.07 16 12 C 0.14 4.94 4.30 86.38 0.37 5.31 16 13 C -0.08 -3.03 2.37 -10.79 -0.03 -3.06 16 14 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 15 C -0.12 -4.35 8.88 71.98 0.64 -3.71 16 16 C 0.02 0.85 3.76 29.85 0.11 0.97 16 17 C -0.60 -34.17 8.41 25.60 0.22 -33.96 16 18 H 0.06 3.14 7.06 -2.91 -0.02 3.12 16 19 C -0.04 -2.57 5.46 84.65 0.46 -2.11 16 20 N -0.94 -59.97 13.65 21.45 0.29 -59.67 16 21 Si 1.12 50.54 29.90 68.60 2.05 52.59 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 C -0.17 -5.19 8.86 22.68 0.20 -4.99 16 26 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.15 2.38 7.60 -2.91 -0.02 2.36 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 33 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.41 9.46 7.66 -92.71 -0.71 8.75 16 35 H 0.05 1.72 7.94 -2.39 -0.02 1.70 16 36 H 0.04 1.56 7.96 -2.39 -0.02 1.54 16 37 H 0.07 1.96 7.18 -2.39 -0.02 1.94 16 38 H 0.05 1.92 6.95 -2.39 -0.02 1.91 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H -0.01 -0.74 8.01 -2.39 -0.02 -0.76 16 41 H -0.02 -0.96 8.00 -2.39 -0.02 -0.98 16 42 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 43 H 0.11 3.88 6.32 -2.91 -0.02 3.86 16 Total: -1.00 -73.43 358.93 5.53 -67.89 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.39 Total: 16.90 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 4.88 Total: -28.05 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -1.56 Total: -81.75 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.23 Total: -27.59 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.05 Total: 52.59 kcal Total: -73.43 5.53 -67.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897088290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.815 kcal (2) G-P(sol) polarization free energy of solvation -73.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds