Wall clock time and date at job start Tue Mar 31 2020 06:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34709 * 117.00156 * 2 1 4 4 O 1.21465 * 119.99912 * 0.02562 * 3 2 1 5 5 C 1.47753 * 119.99978 * 179.97438 * 3 2 1 6 6 C 1.39665 * 120.11287 * 359.97438 * 5 3 2 7 7 C 1.37963 * 119.99788 * 180.02562 * 6 5 3 8 8 C 1.50701 * 119.88409 * 180.02562 * 7 6 5 9 9 C 1.38257 * 120.23775 * 0.02562 * 7 6 5 10 10 C 1.38995 * 120.22428 * 359.97438 * 9 7 6 11 11 N 1.39709 * 119.99612 * 180.02562 * 10 9 7 12 12 C 1.46506 * 119.99695 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.47351 * 305.00427 * 13 12 11 15 15 C 1.53004 * 109.46984 * 65.00365 * 13 12 11 16 16 C 1.53003 * 109.47317 * 184.99990 * 13 12 11 17 17 C 1.50700 * 109.47212 * 174.99973 * 16 13 12 18 18 H 1.08002 * 119.99820 * 0.02562 * 17 16 13 19 19 C 1.37881 * 119.99854 * 179.97438 * 17 16 13 20 20 N 1.31515 * 119.99654 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47076 * 60.00026 * 21 19 17 23 23 H 1.48500 * 109.46961 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47031 * 300.00292 * 21 19 17 25 25 C 1.38668 * 119.99659 * 0.02562 * 10 9 7 26 26 H 1.08996 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46872 * 299.99901 * 1 2 3 28 28 H 1.08995 * 109.47104 * 59.99522 * 1 2 3 29 29 H 1.08006 * 120.00216 * 359.97438 * 6 5 3 30 30 H 1.09001 * 109.46957 * 269.97864 * 8 7 6 31 31 H 1.08997 * 109.47482 * 29.97537 * 8 7 6 32 32 H 1.09000 * 109.47123 * 149.97629 * 8 7 6 33 33 H 1.07999 * 119.89020 * 180.27665 * 9 7 6 34 34 H 0.96993 * 120.00740 * 0.02562 * 11 10 9 35 35 H 1.09003 * 109.47194 * 300.00614 * 12 11 10 36 36 H 1.09006 * 109.47013 * 60.00213 * 12 11 10 37 37 H 1.08993 * 109.47373 * 60.00179 * 15 13 12 38 38 H 1.09001 * 109.46736 * 180.02562 * 15 13 12 39 39 H 1.09000 * 109.47080 * 299.99790 * 15 13 12 40 40 H 1.09001 * 109.47045 * 295.00506 * 16 13 12 41 41 H 1.08998 * 109.46593 * 55.00089 * 16 13 12 42 42 H 0.97003 * 119.99269 * 179.97438 * 20 19 17 43 43 H 1.08005 * 120.11385 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5391 1.2775 0.0006 6 6 4.3020 0.1077 0.0017 7 6 5.6796 0.1826 0.0027 8 6 6.5003 -1.0813 0.0033 9 6 6.3100 1.4131 0.0033 10 6 5.5600 2.5834 0.0022 11 7 6.2020 3.8243 0.0022 12 6 5.4115 5.0579 0.0016 13 6 6.3509 6.2655 0.0011 14 1 7.0393 6.1907 0.8429 15 6 7.1452 6.2932 -1.3063 16 6 5.5298 7.5504 0.1263 17 6 6.4590 8.7304 0.2493 18 1 7.5283 8.5790 0.2388 19 6 5.9441 10.0033 0.3742 20 7 4.6420 10.1876 0.3864 21 14 7.0959 11.4661 0.5259 22 1 7.9579 11.5446 -0.6806 23 1 6.2989 12.7132 0.6475 24 1 7.9466 11.3032 1.7322 25 6 4.1749 2.5192 0.0011 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.8136 -0.8556 0.0025 30 1 6.6977 -1.3858 1.0311 31 1 5.9521 -1.8708 -0.5106 32 1 7.4448 -0.9014 -0.5102 33 1 7.3887 1.4652 -0.0004 34 1 7.1709 3.8692 0.0026 35 1 4.7831 5.0863 -0.8886 36 1 4.7825 5.0867 0.8914 37 1 6.4569 6.3680 -2.1481 38 1 7.8147 7.1533 -1.3064 39 1 7.7302 5.3778 -1.3955 40 1 4.9054 7.6703 -0.7591 41 1 4.8970 7.4923 1.0119 42 1 4.2797 11.0831 0.4746 43 1 3.5903 3.4274 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897088291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:13 Heat of formation + Delta-G solvation = -82.695972 kcal Electronic energy + Delta-G solvation = -22397.002695 eV Core-core repulsion = 19020.260768 eV Total energy + Delta-G solvation = -3376.741927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.62573 -39.29567 -36.84710 -36.49574 -34.26976 -32.63035 -32.15314 -29.63612 -27.92805 -27.05185 -26.80996 -25.68101 -24.16038 -22.91465 -21.12065 -20.37521 -19.29410 -17.88041 -17.14412 -16.50857 -16.43925 -16.11967 -15.83296 -15.16832 -14.64846 -14.47221 -13.97715 -13.84711 -13.76541 -13.39010 -13.32763 -12.95365 -12.60130 -12.44692 -12.31137 -12.16787 -11.82866 -11.76692 -11.53707 -11.23374 -10.94291 -10.93573 -10.88977 -10.56307 -10.43823 -10.37447 -10.07314 -9.73538 -9.32132 -9.07344 -8.84963 -8.37453 -7.32194 -6.01769 -4.04131 0.71678 1.51861 2.55591 2.56147 3.31462 3.36547 3.38037 3.63338 3.82269 4.44127 4.56453 4.71803 4.92567 5.00966 5.11360 5.14059 5.23699 5.33115 5.33782 5.39117 5.45532 5.51571 5.59274 5.65429 5.76680 5.82828 5.91244 6.12336 6.17849 6.29872 6.33103 6.35100 6.40615 6.48684 6.71189 6.84013 6.97773 7.02152 7.44007 7.61598 7.67806 7.74984 7.88766 7.96466 8.38338 9.01362 9.59569 11.09557 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.003056 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.656690 B = 9160.718218 C =10504.054064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.507 3.493 4 O -0.501 6.501 5 C -0.076 4.076 6 C -0.133 4.133 7 C -0.054 4.054 8 C -0.112 4.112 9 C -0.170 4.170 10 C 0.219 3.781 11 N -0.737 5.737 12 C 0.122 3.878 13 C -0.095 4.095 14 H 0.062 0.938 15 C -0.132 4.132 16 C 0.030 3.970 17 C -0.518 4.518 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.140 4.140 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.130 0.870 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.400 0.600 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.030 0.970 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.261 0.739 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 -24.108 -1.299 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.389 6.389 5 C -0.078 4.078 6 C -0.153 4.153 7 C -0.055 4.055 8 C -0.169 4.169 9 C -0.193 4.193 10 C 0.113 3.887 11 N -0.364 5.364 12 C -0.001 4.001 13 C -0.114 4.114 14 H 0.081 0.919 15 C -0.189 4.189 16 C -0.008 4.008 17 C -0.556 4.556 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.164 4.164 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.235 0.765 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.215 -23.464 -1.290 23.530 hybrid contribution 0.626 1.089 0.103 1.260 sum -0.589 -22.375 -1.187 22.414 Atomic orbital electron populations 1.23269 0.76180 1.03583 1.02747 1.86540 1.23379 1.32817 1.84512 1.21350 0.89350 0.81325 0.72756 1.90861 1.66797 1.35990 1.45228 1.18709 0.88249 0.94478 1.06349 1.20936 0.93004 0.97352 1.04027 1.19525 0.93411 0.94629 0.97924 1.20779 0.99269 0.94432 1.02401 1.20697 0.99539 0.90690 1.08360 1.17678 0.91223 0.86344 0.93416 1.45021 1.08589 1.02415 1.80398 1.21712 0.94657 0.82875 1.00898 1.21435 0.97311 0.95030 0.97617 0.91922 1.21726 0.99845 0.99988 0.97375 1.19079 0.94847 0.89399 0.97431 1.21143 0.92912 0.91374 1.50189 0.92615 1.25018 0.94984 0.99026 0.95408 1.69956 1.10913 1.22148 1.50306 0.86672 0.80793 0.82017 0.78601 1.20276 1.21300 1.20289 1.20742 0.92836 0.97353 1.05420 0.88080 0.91799 0.91815 0.85207 0.91062 0.91408 0.91500 0.85785 0.76461 0.92372 0.92300 0.93427 0.91728 0.95121 0.96262 0.96400 0.92902 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.13 9.81 -40.52 -0.40 -4.52 16 3 C 0.51 7.23 7.90 34.62 0.27 7.50 16 4 O -0.50 -8.54 16.13 -19.24 -0.31 -8.85 16 5 C -0.08 -1.04 5.87 -105.01 -0.62 -1.66 16 6 C -0.13 -1.51 9.26 -39.15 -0.36 -1.87 16 7 C -0.05 -0.57 5.87 -104.72 -0.61 -1.18 16 8 C -0.11 -0.82 10.00 36.01 0.36 -0.46 16 9 C -0.17 -1.94 9.53 -39.29 -0.37 -2.32 16 10 C 0.22 3.01 6.65 -83.83 -0.56 2.45 16 11 N -0.74 -10.38 5.46 -58.66 -0.32 -10.70 16 12 C 0.12 2.05 4.30 -4.04 -0.02 2.04 16 13 C -0.10 -1.83 2.37 -90.62 -0.22 -2.04 16 14 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 15 C -0.13 -2.34 8.88 37.16 0.33 -2.01 16 16 C 0.03 0.75 4.45 -27.88 -0.12 0.62 16 17 C -0.52 -14.18 8.41 -34.44 -0.29 -14.47 16 18 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.14 -2.09 8.85 -38.95 -0.34 -2.44 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.13 1.25 7.61 -52.48 -0.40 0.85 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.40 5.02 7.67 -40.82 -0.31 4.71 16 35 H 0.06 1.01 7.95 -51.93 -0.41 0.60 16 36 H 0.06 1.04 7.95 -51.93 -0.41 0.62 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 39 H 0.03 0.45 7.18 -51.93 -0.37 0.07 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.14 2.25 6.32 -52.48 -0.33 1.92 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -31.39 360.24 -8.22 -39.61 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.75 Total: 1.53 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -1.58 Total: -12.96 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.42 Total: -36.68 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.71 Total: -13.37 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.39 -8.22 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897088291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.086 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds