Wall clock time and date at job start Tue Mar 31 2020 06:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34709 * 117.00156 * 2 1 4 4 O 1.21465 * 119.99912 * 0.02562 * 3 2 1 5 5 C 1.47753 * 119.99978 * 179.97438 * 3 2 1 6 6 C 1.39665 * 120.11287 * 359.97438 * 5 3 2 7 7 C 1.37963 * 119.99788 * 180.02562 * 6 5 3 8 8 C 1.50701 * 119.88409 * 180.02562 * 7 6 5 9 9 C 1.38257 * 120.23775 * 0.02562 * 7 6 5 10 10 C 1.38995 * 120.22428 * 359.97438 * 9 7 6 11 11 N 1.39709 * 119.99612 * 180.02562 * 10 9 7 12 12 C 1.46506 * 119.99695 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.47351 * 305.00427 * 13 12 11 15 15 C 1.53004 * 109.46984 * 65.00365 * 13 12 11 16 16 C 1.53003 * 109.47317 * 184.99990 * 13 12 11 17 17 C 1.50700 * 109.47212 * 174.99973 * 16 13 12 18 18 H 1.08002 * 119.99820 * 0.02562 * 17 16 13 19 19 C 1.37881 * 119.99854 * 179.97438 * 17 16 13 20 20 N 1.31515 * 119.99654 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47076 * 60.00026 * 21 19 17 23 23 H 1.48500 * 109.46961 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47031 * 300.00292 * 21 19 17 25 25 C 1.38668 * 119.99659 * 0.02562 * 10 9 7 26 26 H 1.08996 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46872 * 299.99901 * 1 2 3 28 28 H 1.08995 * 109.47104 * 59.99522 * 1 2 3 29 29 H 1.08006 * 120.00216 * 359.97438 * 6 5 3 30 30 H 1.09001 * 109.46957 * 269.97864 * 8 7 6 31 31 H 1.08997 * 109.47482 * 29.97537 * 8 7 6 32 32 H 1.09000 * 109.47123 * 149.97629 * 8 7 6 33 33 H 1.07999 * 119.89020 * 180.27665 * 9 7 6 34 34 H 0.96993 * 120.00740 * 0.02562 * 11 10 9 35 35 H 1.09003 * 109.47194 * 300.00614 * 12 11 10 36 36 H 1.09006 * 109.47013 * 60.00213 * 12 11 10 37 37 H 1.08993 * 109.47373 * 60.00179 * 15 13 12 38 38 H 1.09001 * 109.46736 * 180.02562 * 15 13 12 39 39 H 1.09000 * 109.47080 * 299.99790 * 15 13 12 40 40 H 1.09001 * 109.47045 * 295.00506 * 16 13 12 41 41 H 1.08998 * 109.46593 * 55.00089 * 16 13 12 42 42 H 0.97003 * 119.99269 * 179.97438 * 20 19 17 43 43 H 1.08005 * 120.11385 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5391 1.2775 0.0006 6 6 4.3020 0.1077 0.0017 7 6 5.6796 0.1826 0.0027 8 6 6.5003 -1.0813 0.0033 9 6 6.3100 1.4131 0.0033 10 6 5.5600 2.5834 0.0022 11 7 6.2020 3.8243 0.0022 12 6 5.4115 5.0579 0.0016 13 6 6.3509 6.2655 0.0011 14 1 7.0393 6.1907 0.8429 15 6 7.1452 6.2932 -1.3063 16 6 5.5298 7.5504 0.1263 17 6 6.4590 8.7304 0.2493 18 1 7.5283 8.5790 0.2388 19 6 5.9441 10.0033 0.3742 20 7 4.6420 10.1876 0.3864 21 14 7.0959 11.4661 0.5259 22 1 7.9579 11.5446 -0.6806 23 1 6.2989 12.7132 0.6475 24 1 7.9466 11.3032 1.7322 25 6 4.1749 2.5192 0.0011 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.8136 -0.8556 0.0025 30 1 6.6977 -1.3858 1.0311 31 1 5.9521 -1.8708 -0.5106 32 1 7.4448 -0.9014 -0.5102 33 1 7.3887 1.4652 -0.0004 34 1 7.1709 3.8692 0.0026 35 1 4.7831 5.0863 -0.8886 36 1 4.7825 5.0867 0.8914 37 1 6.4569 6.3680 -2.1481 38 1 7.8147 7.1533 -1.3064 39 1 7.7302 5.3778 -1.3955 40 1 4.9054 7.6703 -0.7591 41 1 4.8970 7.4923 1.0119 42 1 4.2797 11.0831 0.4746 43 1 3.5903 3.4274 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897088291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:13 Heat of formation + Delta-G solvation = -100.185305 kcal Electronic energy + Delta-G solvation = -22397.761090 eV Core-core repulsion = 19020.260768 eV Total energy + Delta-G solvation = -3377.500321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.66843 -40.31992 -38.22191 -37.55170 -35.77985 -34.11971 -33.48193 -30.85121 -28.88953 -28.63791 -27.76008 -27.05112 -25.18554 -24.72343 -22.18094 -21.50685 -20.76639 -18.94871 -18.58625 -18.13440 -17.43171 -17.18341 -16.87390 -16.64820 -16.17594 -16.02960 -15.07450 -14.85924 -14.72346 -14.44713 -14.36150 -14.23558 -14.10203 -13.89372 -13.38321 -13.13783 -13.00080 -12.94132 -12.78667 -12.64574 -12.59888 -12.29277 -12.21005 -12.05284 -11.85944 -11.69372 -11.62798 -11.19172 -11.06746 -10.98392 -10.55263 -9.77236 -8.41405 -8.18996 -6.29097 -0.30910 0.55710 1.39875 1.42654 1.50335 1.50463 1.62354 2.38632 2.50530 2.83692 3.14818 3.65260 3.85759 4.01298 4.13421 4.17046 4.26791 4.30985 4.32999 4.34680 4.44856 4.47134 4.65292 4.72022 4.72567 4.79474 4.89157 4.96805 4.97598 5.13528 5.19066 5.26937 5.30532 5.31983 5.35303 5.44015 5.49289 5.61539 5.73577 5.82485 5.84070 6.21016 6.30662 6.62829 6.85116 6.88288 7.39636 8.93109 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.003056 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.656690 B = 9160.718218 C =10504.054064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.508 3.492 4 O -0.542 6.542 5 C -0.094 4.094 6 C -0.120 4.120 7 C -0.049 4.049 8 C -0.110 4.110 9 C -0.158 4.158 10 C 0.205 3.795 11 N -0.733 5.733 12 C 0.140 3.860 13 C -0.083 4.083 14 H 0.068 0.932 15 C -0.124 4.124 16 C 0.033 3.967 17 C -0.530 4.530 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.937 5.937 21 Si 0.963 3.037 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.266 1.266 25 C -0.168 4.168 26 H 0.141 0.859 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.152 0.848 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.411 0.589 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.038 0.962 38 H 0.050 0.950 39 H 0.069 0.931 40 H -0.010 1.010 41 H -0.013 1.013 42 H 0.262 0.738 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -26.836 -1.433 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.354 3.646 4 O -0.434 6.434 5 C -0.096 4.096 6 C -0.141 4.141 7 C -0.050 4.050 8 C -0.167 4.167 9 C -0.181 4.181 10 C 0.101 3.899 11 N -0.363 5.363 12 C 0.015 3.985 13 C -0.102 4.102 14 H 0.086 0.914 15 C -0.181 4.181 16 C -0.005 4.005 17 C -0.568 4.568 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.577 5.577 21 Si 0.788 3.212 22 H -0.190 1.190 23 H -0.213 1.213 24 H -0.191 1.191 25 C -0.191 4.191 26 H 0.159 0.841 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.170 0.830 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.169 0.831 34 H 0.248 0.752 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.009 0.991 41 H 0.005 0.995 42 H 0.071 0.929 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.358 -26.253 -1.426 26.327 hybrid contribution -0.244 1.767 0.152 1.790 sum 1.114 -24.487 -1.274 24.545 Atomic orbital electron populations 1.23615 0.74356 1.06108 1.02460 1.86526 1.25140 1.31147 1.83781 1.21579 0.89742 0.81485 0.71751 1.90838 1.67681 1.37432 1.47405 1.18815 0.88225 0.94974 1.07550 1.21248 0.93559 0.97203 1.02047 1.19972 0.93295 0.95804 0.95958 1.20867 0.99385 0.92756 1.03656 1.21035 1.00799 0.89919 1.06355 1.17797 0.90846 0.86823 0.94464 1.44670 1.08669 1.01526 1.81401 1.21233 0.94007 0.83596 0.99619 1.21189 0.96950 0.93062 0.98954 0.91357 1.21636 0.99417 1.01335 0.95757 1.18968 0.94637 0.92298 0.94591 1.21592 0.93708 0.92196 1.49299 0.91530 1.25993 0.96563 1.02449 0.95100 1.70113 1.13087 1.22821 1.51702 0.85527 0.78616 0.77861 0.79217 1.19025 1.21280 1.19121 1.20647 0.93612 0.97014 1.07862 0.84066 0.92184 0.92152 0.83004 0.89726 0.89992 0.90131 0.83062 0.75223 0.93614 0.94059 0.94314 0.93070 0.91258 0.99141 0.99496 0.92937 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -7.85 9.81 -56.19 -0.55 -8.40 16 3 C 0.51 14.89 7.90 70.34 0.56 15.44 16 4 O -0.54 -19.76 16.13 19.95 0.32 -19.44 16 5 C -0.09 -2.59 5.87 -20.11 -0.12 -2.71 16 6 C -0.12 -2.47 9.26 22.55 0.21 -2.27 16 7 C -0.05 -0.87 5.87 -19.92 -0.12 -0.99 16 8 C -0.11 -1.08 10.00 71.24 0.71 -0.37 16 9 C -0.16 -3.18 9.53 22.46 0.21 -2.96 16 10 C 0.21 5.51 6.65 38.17 0.25 5.76 16 11 N -0.73 -20.25 5.46 -339.51 -1.85 -22.10 16 12 C 0.14 4.94 4.30 86.38 0.37 5.32 16 13 C -0.08 -3.25 2.37 -10.79 -0.03 -3.27 16 14 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 15 C -0.12 -4.33 8.88 71.98 0.64 -3.69 16 16 C 0.03 1.71 4.45 29.85 0.13 1.85 16 17 C -0.53 -29.59 8.41 25.60 0.22 -29.37 16 18 H 0.07 3.50 7.06 -2.91 -0.02 3.48 16 19 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 20 N -0.94 -57.95 13.29 21.45 0.28 -57.67 16 21 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 C -0.17 -5.23 8.85 22.68 0.20 -5.03 16 26 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.15 2.41 7.61 -2.91 -0.02 2.39 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 32 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 33 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.41 9.43 7.67 -92.71 -0.71 8.72 16 35 H 0.05 1.71 7.95 -2.39 -0.02 1.69 16 36 H 0.04 1.58 7.95 -2.38 -0.02 1.56 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.91 6.95 -2.39 -0.02 1.90 16 39 H 0.07 1.87 7.18 -2.39 -0.02 1.86 16 40 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 43 H 0.11 3.94 6.32 -2.91 -0.02 3.92 16 Total: -1.00 -71.63 360.24 5.42 -66.21 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.29 Total: 15.46 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 4.90 Total: -20.40 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -1.57 Total: -79.77 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.23 Total: -27.84 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -71.63 5.42 -66.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897088291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.973 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds