Wall clock time and date at job start Tue Mar 31 2020 06:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38009 * 120.01768 * 2 1 4 4 C 1.38236 * 120.20551 * 180.27331 * 3 2 1 5 5 C 1.38851 * 120.24014 * 359.45244 * 4 3 2 6 6 O 1.35909 * 119.98565 * 180.27062 * 5 4 3 7 7 C 1.38449 * 120.02986 * 0.24990 * 5 4 3 8 8 C 1.39531 * 119.79652 * 0.02562 * 7 5 4 9 9 C 1.47859 * 120.12136 * 180.02562 * 8 7 5 10 10 O 1.21549 * 120.00051 * 173.73914 * 9 8 7 11 11 N 1.34773 * 119.99882 * 353.73580 * 9 8 7 12 12 C 1.46499 * 120.00077 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47199 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47571 * 299.99935 * 13 12 11 15 15 C 1.52995 * 109.47341 * 60.00131 * 13 12 11 16 16 C 1.53002 * 109.47350 * 180.02562 * 13 12 11 17 17 C 1.50698 * 109.47678 * 180.02562 * 16 13 12 18 18 H 1.08000 * 119.99454 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00355 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99830 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47011 * 60.00502 * 21 19 17 23 23 H 1.48508 * 109.46745 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47498 * 300.00238 * 21 19 17 25 25 H 1.08994 * 109.46983 * 263.68833 * 1 2 3 26 26 H 1.08997 * 109.46698 * 23.69077 * 1 2 3 27 27 H 1.08993 * 109.46729 * 143.68992 * 1 2 3 28 28 H 1.07999 * 119.89432 * 0.02562 * 3 2 1 29 29 H 1.08005 * 119.87938 * 179.72520 * 4 3 2 30 30 H 0.96704 * 113.99798 * 89.99973 * 6 5 4 31 31 H 1.07998 * 120.10477 * 180.02562 * 7 5 4 32 32 H 0.97000 * 120.00184 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47190 * 300.00101 * 12 11 9 34 34 H 1.09001 * 109.47270 * 59.99903 * 12 11 9 35 35 H 1.09006 * 109.46708 * 59.99763 * 14 13 12 36 36 H 1.08995 * 109.47481 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.47279 * 300.00597 * 14 13 12 38 38 H 1.09007 * 109.47294 * 60.00019 * 15 13 12 39 39 H 1.09005 * 109.47746 * 179.97438 * 15 13 12 40 40 H 1.09005 * 109.47577 * 299.99966 * 15 13 12 41 41 H 1.09004 * 109.46920 * 300.00514 * 16 13 12 42 42 H 1.09001 * 109.47334 * 59.99748 * 16 13 12 43 43 H 0.96997 * 119.99654 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1950 0.0000 4 6 3.5799 1.1995 -0.0057 5 6 4.2831 0.0023 0.0000 6 8 5.6422 0.0128 -0.0001 7 6 3.6005 -1.2022 0.0062 8 6 2.2052 -1.2085 0.0062 9 6 1.4689 -2.4907 0.0134 10 8 0.2589 -2.4960 0.1281 11 7 2.1395 -3.6535 -0.1074 12 6 1.4100 -4.9239 -0.1009 13 6 2.3996 -6.0810 -0.2509 14 6 3.1582 -5.9354 -1.5716 15 6 3.3925 -6.0572 0.9128 16 6 1.6377 -7.4078 -0.2448 17 6 2.6124 -8.5477 -0.3919 18 1 3.6696 -8.3459 -0.4814 19 6 2.1545 -9.8480 -0.4124 20 7 0.8671 -10.0936 -0.3039 21 14 3.3628 -11.2608 -0.5955 22 1 4.3264 -11.2375 0.5340 23 1 2.6231 -12.5486 -0.5894 24 1 4.0991 -11.1195 -1.8774 25 1 -0.3633 -0.1130 1.0214 26 1 -0.3632 0.9411 -0.4129 27 1 -0.3632 -0.8281 -0.6085 28 1 1.6561 2.1294 0.0004 29 1 4.1148 2.1378 -0.0102 30 1 6.0355 0.0201 0.8833 31 1 4.1463 -2.1341 0.0111 32 1 3.1052 -3.6492 -0.1987 33 1 0.8699 -5.0279 0.8402 34 1 0.7023 -4.9407 -0.9297 35 1 3.7010 -4.9901 -1.5765 36 1 3.8629 -6.7600 -1.6787 37 1 2.4508 -5.9524 -2.4008 38 1 2.8521 -6.1610 1.8538 39 1 4.0973 -6.8818 0.8062 40 1 3.9354 -5.1119 0.9080 41 1 1.0968 -7.5118 0.6959 42 1 0.9305 -7.4246 -1.0741 43 1 0.5450 -11.0084 -0.3187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908215069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:07 Heat of formation + Delta-G solvation = -72.903680 kcal Electronic energy + Delta-G solvation = -23115.753567 eV Core-core repulsion = 19739.436266 eV Total energy + Delta-G solvation = -3376.317301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60329 -39.10073 -37.42989 -36.64524 -33.89519 -32.33022 -31.74005 -31.25872 -27.27695 -26.81786 -26.53798 -25.99840 -24.02154 -22.83817 -21.68928 -20.50579 -19.09082 -17.95295 -16.94311 -16.42804 -16.12220 -15.81083 -15.30575 -15.27688 -14.97325 -14.49271 -14.08877 -13.82063 -13.63080 -13.19211 -13.10424 -12.81642 -12.68699 -12.18467 -12.06947 -12.00153 -11.94007 -11.71030 -11.17652 -11.03389 -11.01949 -10.87926 -10.64835 -10.42691 -10.28287 -9.89920 -9.61794 -9.32792 -9.17657 -8.95177 -8.85403 -8.61959 -8.36724 -6.00949 -4.02442 0.61401 0.95435 2.77525 3.31433 3.32707 3.36911 3.38811 3.55239 3.90694 4.44195 4.50139 4.56813 4.73025 4.95635 5.09685 5.34443 5.35874 5.44213 5.49839 5.59629 5.63216 5.72611 5.75021 5.86849 6.03143 6.08979 6.13905 6.20202 6.24002 6.34708 6.36376 6.48232 6.57860 6.60569 6.73593 7.03338 7.05100 7.10028 7.32882 7.61963 7.68133 7.74476 7.97468 8.33601 8.39931 9.02070 9.60750 11.10490 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.003267 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.611653 B = 8568.592035 C = 9424.366881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.032 4.032 3 C -0.116 4.116 4 C -0.119 4.119 5 C 0.089 3.911 6 O -0.497 6.497 7 C -0.108 4.108 8 C -0.118 4.118 9 C 0.550 3.450 10 O -0.533 6.533 11 N -0.715 5.715 12 C 0.128 3.872 13 C -0.073 4.073 14 C -0.128 4.128 15 C -0.127 4.127 16 C 0.037 3.963 17 C -0.513 4.513 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.390 0.610 31 H 0.133 0.867 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.995 22.179 2.019 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.033 4.033 3 C -0.134 4.134 4 C -0.138 4.138 5 C 0.044 3.956 6 O -0.307 6.307 7 C -0.127 4.127 8 C -0.121 4.121 9 C 0.337 3.663 10 O -0.412 6.412 11 N -0.366 5.366 12 C 0.005 3.995 13 C -0.074 4.074 14 C -0.185 4.185 15 C -0.185 4.185 16 C 0.000 4.000 17 C -0.551 4.551 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.246 0.754 31 H 0.151 0.849 32 H 0.234 0.766 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.926 21.973 1.491 22.568 hybrid contribution 1.322 -0.882 0.373 1.632 sum 6.248 21.091 1.864 22.076 Atomic orbital electron populations 1.21093 0.89687 1.03103 1.03838 1.20120 0.97235 0.91314 0.94624 1.20946 0.93453 0.97755 1.01278 1.21580 0.94547 0.97960 0.99706 1.18267 0.83077 0.91970 1.02248 1.84862 1.15739 1.96432 1.33645 1.21615 0.93402 0.98422 0.99293 1.19811 0.92839 0.93903 1.05591 1.18183 0.87194 0.83642 0.77310 1.90721 1.13536 1.87117 1.49856 1.46173 1.11135 1.06237 1.73090 1.21677 0.94858 0.80964 1.01979 1.20919 0.95323 0.96065 0.95063 1.21772 1.00184 0.99674 0.96885 1.21768 0.99121 0.99710 0.97853 1.19080 0.95005 0.88444 0.97512 1.21144 0.93417 0.90690 1.49836 0.92306 1.25009 0.94988 0.98929 0.95522 1.69955 1.12804 1.20135 1.50496 0.86707 0.81195 0.81769 0.78606 1.20321 1.21388 1.20314 0.90571 0.92508 0.88347 0.84936 0.85064 0.75406 0.84933 0.76621 0.91561 0.91563 0.95332 0.91339 0.93275 0.93287 0.91335 0.95401 0.96319 0.96307 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.72 36.01 0.31 -1.05 16 2 C -0.03 -0.37 5.91 -104.21 -0.62 -0.98 16 3 C -0.12 -1.06 9.65 -39.67 -0.38 -1.44 16 4 C -0.12 -1.04 9.98 -39.36 -0.39 -1.44 16 5 C 0.09 0.87 6.70 -39.28 -0.26 0.61 16 6 O -0.50 -4.26 13.50 -19.45 -0.26 -4.52 16 7 C -0.11 -1.18 9.46 -39.02 -0.37 -1.55 16 8 C -0.12 -1.50 5.87 -104.98 -0.62 -2.12 16 9 C 0.55 8.40 7.70 -12.32 -0.09 8.31 16 10 O -0.53 -9.55 13.34 5.32 0.07 -9.48 16 11 N -0.71 -10.56 4.91 -61.25 -0.30 -10.86 16 12 C 0.13 2.24 4.56 -4.05 -0.02 2.22 16 13 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 14 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 17 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16 18 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 21 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 27 H 0.10 1.35 5.85 -51.93 -0.30 1.04 16 28 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 29 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 30 H 0.39 1.48 9.06 45.56 0.41 1.89 16 31 H 0.13 1.30 6.45 -52.49 -0.34 0.96 16 32 H 0.40 5.09 4.24 -40.82 -0.17 4.92 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 36 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 39 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 40 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -31.60 345.93 -7.42 -39.02 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.46 Total: 4.40 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.40 Total: -14.29 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.44 Total: -36.44 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.19 Total: -14.00 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.60 -7.42 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908215069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.881 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds