Wall clock time and date at job start Tue Mar 31 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38009 * 120.01768 * 2 1 4 4 C 1.38236 * 120.20551 * 180.27331 * 3 2 1 5 5 C 1.38851 * 120.24014 * 359.45244 * 4 3 2 6 6 O 1.35909 * 119.98565 * 180.27062 * 5 4 3 7 7 C 1.38449 * 120.02986 * 0.24990 * 5 4 3 8 8 C 1.39531 * 119.79652 * 0.02562 * 7 5 4 9 9 C 1.47859 * 120.12136 * 180.02562 * 8 7 5 10 10 O 1.21549 * 120.00051 * 173.73914 * 9 8 7 11 11 N 1.34773 * 119.99882 * 353.73580 * 9 8 7 12 12 C 1.46499 * 120.00077 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47199 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47571 * 299.99935 * 13 12 11 15 15 C 1.52995 * 109.47341 * 60.00131 * 13 12 11 16 16 C 1.53002 * 109.47350 * 180.02562 * 13 12 11 17 17 C 1.50698 * 109.47678 * 180.02562 * 16 13 12 18 18 H 1.08000 * 119.99454 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00355 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99830 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47011 * 60.00502 * 21 19 17 23 23 H 1.48508 * 109.46745 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47498 * 300.00238 * 21 19 17 25 25 H 1.08994 * 109.46983 * 263.68833 * 1 2 3 26 26 H 1.08997 * 109.46698 * 23.69077 * 1 2 3 27 27 H 1.08993 * 109.46729 * 143.68992 * 1 2 3 28 28 H 1.07999 * 119.89432 * 0.02562 * 3 2 1 29 29 H 1.08005 * 119.87938 * 179.72520 * 4 3 2 30 30 H 0.96704 * 113.99798 * 89.99973 * 6 5 4 31 31 H 1.07998 * 120.10477 * 180.02562 * 7 5 4 32 32 H 0.97000 * 120.00184 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47190 * 300.00101 * 12 11 9 34 34 H 1.09001 * 109.47270 * 59.99903 * 12 11 9 35 35 H 1.09006 * 109.46708 * 59.99763 * 14 13 12 36 36 H 1.08995 * 109.47481 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.47279 * 300.00597 * 14 13 12 38 38 H 1.09007 * 109.47294 * 60.00019 * 15 13 12 39 39 H 1.09005 * 109.47746 * 179.97438 * 15 13 12 40 40 H 1.09005 * 109.47577 * 299.99966 * 15 13 12 41 41 H 1.09004 * 109.46920 * 300.00514 * 16 13 12 42 42 H 1.09001 * 109.47334 * 59.99748 * 16 13 12 43 43 H 0.96997 * 119.99654 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1950 0.0000 4 6 3.5799 1.1995 -0.0057 5 6 4.2831 0.0023 0.0000 6 8 5.6422 0.0128 -0.0001 7 6 3.6005 -1.2022 0.0062 8 6 2.2052 -1.2085 0.0062 9 6 1.4689 -2.4907 0.0134 10 8 0.2589 -2.4960 0.1281 11 7 2.1395 -3.6535 -0.1074 12 6 1.4100 -4.9239 -0.1009 13 6 2.3996 -6.0810 -0.2509 14 6 3.1582 -5.9354 -1.5716 15 6 3.3925 -6.0572 0.9128 16 6 1.6377 -7.4078 -0.2448 17 6 2.6124 -8.5477 -0.3919 18 1 3.6696 -8.3459 -0.4814 19 6 2.1545 -9.8480 -0.4124 20 7 0.8671 -10.0936 -0.3039 21 14 3.3628 -11.2608 -0.5955 22 1 4.3264 -11.2375 0.5340 23 1 2.6231 -12.5486 -0.5894 24 1 4.0991 -11.1195 -1.8774 25 1 -0.3633 -0.1130 1.0214 26 1 -0.3632 0.9411 -0.4129 27 1 -0.3632 -0.8281 -0.6085 28 1 1.6561 2.1294 0.0004 29 1 4.1148 2.1378 -0.0102 30 1 6.0355 0.0201 0.8833 31 1 4.1463 -2.1341 0.0111 32 1 3.1052 -3.6492 -0.1987 33 1 0.8699 -5.0279 0.8402 34 1 0.7023 -4.9407 -0.9297 35 1 3.7010 -4.9901 -1.5765 36 1 3.8629 -6.7600 -1.6787 37 1 2.4508 -5.9524 -2.4008 38 1 2.8521 -6.1610 1.8538 39 1 4.0973 -6.8818 0.8062 40 1 3.9354 -5.1119 0.9080 41 1 1.0968 -7.5118 0.6959 42 1 0.9305 -7.4246 -1.0741 43 1 0.5450 -11.0084 -0.3187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908215069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:06 Heat of formation + Delta-G solvation = -93.852264 kcal Electronic energy + Delta-G solvation = -23116.661966 eV Core-core repulsion = 19739.436266 eV Total energy + Delta-G solvation = -3377.225700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.58915 -40.10431 -38.75759 -37.56050 -35.40807 -34.13183 -32.55762 -32.22433 -29.13320 -28.00775 -27.99157 -27.13620 -25.27927 -24.34969 -22.54687 -21.64356 -20.22007 -19.22169 -18.36904 -17.95067 -17.10630 -16.64726 -16.59083 -16.46718 -16.19280 -15.94661 -15.31707 -15.00577 -14.72591 -14.59347 -14.28225 -14.24835 -13.94936 -13.71704 -13.45735 -12.92282 -12.84267 -12.75178 -12.74815 -12.60486 -12.48838 -12.34620 -12.23407 -12.02016 -11.71775 -11.55664 -11.09057 -10.90015 -10.62635 -10.50692 -10.23065 -9.97452 -9.46992 -8.14020 -6.22004 -0.22414 0.22148 1.42708 1.44744 1.51938 1.78919 2.13279 2.44965 2.68349 3.20401 3.22067 3.67208 3.77219 3.94619 3.97663 4.05885 4.17076 4.19687 4.37128 4.62352 4.66598 4.69487 4.74010 4.76307 4.83914 4.90754 4.92935 5.05612 5.09766 5.10270 5.26356 5.31792 5.37286 5.45851 5.48452 5.51152 5.55597 5.57433 5.77158 5.78508 5.89287 6.29805 6.50916 6.86002 6.92850 7.16857 7.45804 8.98361 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.003267 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.611653 B = 8568.592035 C = 9424.366881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.048 4.048 3 C -0.109 4.109 4 C -0.111 4.111 5 C 0.091 3.909 6 O -0.504 6.504 7 C -0.114 4.114 8 C -0.138 4.138 9 C 0.547 3.453 10 O -0.568 6.568 11 N -0.706 5.706 12 C 0.142 3.858 13 C -0.065 4.065 14 C -0.123 4.123 15 C -0.122 4.122 16 C 0.041 3.959 17 C -0.516 4.516 18 H 0.073 0.927 19 C -0.004 4.004 20 N -0.939 5.939 21 Si 0.958 3.042 22 H -0.266 1.266 23 H -0.291 1.291 24 H -0.267 1.267 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.412 0.588 31 H 0.141 0.859 32 H 0.409 0.591 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.057 0.943 40 H 0.067 0.933 41 H -0.013 1.013 42 H -0.014 1.014 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.077 24.597 1.983 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.127 4.127 4 C -0.129 4.129 5 C 0.047 3.953 6 O -0.318 6.318 7 C -0.133 4.133 8 C -0.142 4.142 9 C 0.336 3.664 10 O -0.449 6.449 11 N -0.358 5.358 12 C 0.018 3.982 13 C -0.066 4.066 14 C -0.180 4.180 15 C -0.179 4.179 16 C 0.004 3.996 17 C -0.554 4.554 18 H 0.091 0.909 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.217 1.217 24 H -0.192 1.192 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.179 0.821 29 H 0.178 0.822 30 H 0.271 0.729 31 H 0.159 0.841 32 H 0.248 0.752 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.005 0.995 42 H 0.004 0.996 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.062 24.412 1.469 25.751 hybrid contribution 0.375 -1.519 0.397 1.614 sum 8.437 22.893 1.866 24.470 Atomic orbital electron populations 1.20994 0.90184 1.03222 1.02934 1.20275 0.97193 0.91979 0.95485 1.21228 0.93841 0.97784 0.99835 1.21923 0.94439 0.98781 0.97787 1.18348 0.83701 0.91867 1.01435 1.84813 1.14928 1.96334 1.35684 1.21699 0.92577 0.99587 0.99437 1.19626 0.93608 0.92618 1.08314 1.18697 0.86972 0.84529 0.76203 1.90714 1.15199 1.87686 1.51311 1.45941 1.11498 1.05115 1.73259 1.21261 0.94386 0.82120 1.00463 1.20719 0.95431 0.93427 0.96997 1.21705 0.99695 1.01244 0.95340 1.21700 0.98419 1.01419 0.96378 1.18951 0.94568 0.91648 0.94445 1.21566 0.94287 0.91178 1.48326 0.90928 1.25943 0.96644 1.02061 0.95477 1.70116 1.15022 1.20568 1.52260 0.85600 0.78880 0.77983 0.79185 1.19083 1.21704 1.19182 0.91360 0.89885 0.91345 0.82090 0.82248 0.72868 0.84094 0.75198 0.93160 0.93318 0.91590 0.92351 0.94370 0.94236 0.92378 0.91455 0.99459 0.99551 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.72 71.24 0.62 -1.99 16 2 C -0.05 -1.04 5.91 -19.60 -0.12 -1.15 16 3 C -0.11 -1.62 9.65 22.21 0.21 -1.41 16 4 C -0.11 -1.49 9.98 22.42 0.22 -1.27 16 5 C 0.09 1.47 6.70 22.47 0.15 1.62 16 6 O -0.50 -6.70 13.50 -92.52 -1.25 -7.95 16 7 C -0.11 -2.21 9.46 22.63 0.21 -2.00 16 8 C -0.14 -3.37 5.87 -20.10 -0.12 -3.49 16 9 C 0.55 16.86 7.70 86.79 0.67 17.52 16 10 O -0.57 -21.25 13.34 -3.87 -0.05 -21.31 16 11 N -0.71 -20.55 4.91 -465.98 -2.29 -22.83 16 12 C 0.14 5.13 4.56 86.38 0.39 5.53 16 13 C -0.07 -2.48 0.54 -52.18 -0.03 -2.51 16 14 C -0.12 -4.19 8.05 71.98 0.58 -3.62 16 15 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 16 C 0.04 2.11 4.04 29.85 0.12 2.23 16 17 C -0.52 -27.63 7.65 25.60 0.20 -27.43 16 18 H 0.07 3.63 5.68 -2.91 -0.02 3.61 16 19 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 20 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16 21 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.33 8.04 -2.39 -0.02 1.31 16 27 H 0.07 1.96 5.85 -2.39 -0.01 1.94 16 28 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.41 1.49 9.06 -74.05 -0.67 0.82 16 31 H 0.14 2.36 6.45 -2.91 -0.02 2.34 16 32 H 0.41 9.67 4.24 -92.71 -0.39 9.28 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 1.75 6.86 -2.38 -0.02 1.73 16 36 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 37 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.06 2.08 6.62 -2.38 -0.02 2.06 16 40 H 0.07 1.72 6.86 -2.38 -0.02 1.70 16 41 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 43 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -71.39 345.93 2.86 -68.53 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.03 Total: 16.15 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 4.16 Total: -21.26 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.00 Total: -79.72 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.30 Total: -29.26 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.39 2.86 -68.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908215069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.321 kcal (2) G-P(sol) polarization free energy of solvation -71.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds