Wall clock time and date at job start Tue Mar 31 2020 07:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38672 * 120.78727 * 2 1 4 4 C 1.38182 * 119.15969 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.61612 * 180.02562 * 4 3 2 6 6 N 1.31888 * 120.76755 * 0.02562 * 4 3 2 7 7 C 1.31862 * 121.72540 * 359.97438 * 6 4 3 8 8 C 1.50695 * 119.61883 * 179.97438 * 7 6 4 9 9 O 1.45201 * 109.47187 * 179.97438 * 8 7 6 10 10 C 1.34222 * 116.99867 * 180.02562 * 9 8 7 11 11 O 1.20830 * 120.00323 * 359.72425 * 10 9 8 12 12 C 1.50706 * 120.00024 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47348 * 179.72254 * 12 10 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46808 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46847 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99683 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99722 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00073 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46848 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47295 * 119.99578 * 20 18 16 23 23 H 1.48500 * 109.47035 * 240.00179 * 20 18 16 24 24 C 1.38230 * 120.76152 * 0.27309 * 7 6 4 25 25 H 1.09000 * 109.47290 * 89.99926 * 1 2 3 26 26 H 1.09004 * 109.47114 * 210.00350 * 1 2 3 27 27 H 1.09004 * 109.47172 * 329.99915 * 1 2 3 28 28 H 1.07993 * 120.42224 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46808 * 270.02338 * 5 4 3 30 30 H 1.08992 * 109.47496 * 30.02114 * 5 4 3 31 31 H 1.08998 * 109.47395 * 150.02500 * 5 4 3 32 32 H 1.09009 * 109.47109 * 60.00035 * 8 7 6 33 33 H 1.09001 * 109.47115 * 299.99968 * 8 7 6 34 34 H 1.09001 * 109.46564 * 299.72723 * 12 10 9 35 35 H 1.08998 * 109.47012 * 59.71777 * 12 10 9 36 36 H 1.09000 * 109.46986 * 300.00089 * 13 12 10 37 37 H 1.09002 * 109.46857 * 60.00224 * 13 12 10 38 38 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 39 39 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 40 40 H 1.08996 * 109.46961 * 299.99496 * 15 14 13 41 41 H 1.08994 * 109.47402 * 59.99882 * 15 14 13 42 42 H 0.96999 * 120.00128 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.41812 * 179.70756 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 6 4.3797 2.4405 0.0000 6 7 4.2403 0.0001 -0.0016 7 6 3.5983 -1.1517 -0.0016 8 6 4.3800 -2.4400 -0.0034 9 8 3.4607 -3.5640 -0.0025 10 6 4.0006 -4.7928 -0.0033 11 8 5.2016 -4.9250 -0.0098 12 6 3.1088 -6.0077 -0.0030 13 6 3.9698 -7.2724 -0.0111 14 6 3.0644 -8.5057 -0.0102 15 6 3.9255 -9.7705 -0.0176 16 6 3.0336 -10.9853 -0.0173 17 1 1.9601 -10.8670 -0.0119 18 6 3.5882 -12.2475 -0.0240 19 7 4.8954 -12.3915 -0.0311 20 14 2.4828 -13.7534 -0.0243 21 1 1.0613 -13.3239 -0.0174 22 1 2.7489 -14.5625 -1.2408 23 1 2.7594 -14.5707 1.1842 24 6 2.2166 -1.1909 -0.0062 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6967 2.1377 0.0004 29 1 4.5674 2.7520 -1.0275 30 1 3.8077 3.2123 0.5149 31 1 5.3294 2.2891 0.5130 32 1 5.0088 -2.4847 0.8859 33 1 5.0067 -2.4835 -0.8941 34 1 2.4838 -5.9993 0.8899 35 1 2.4754 -5.9936 -0.8899 36 1 4.5948 -7.2807 -0.9040 37 1 4.6031 -7.2864 0.8759 38 1 2.4397 -8.4972 0.8830 39 1 2.4307 -8.4919 -0.8969 40 1 4.5504 -9.7792 -0.9106 41 1 4.5588 -9.7840 0.8693 42 1 5.2856 -13.2795 -0.0354 43 1 1.6964 -2.1374 -0.0110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909319701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:15 Heat of formation + Delta-G solvation = -87.955951 kcal Electronic energy + Delta-G solvation = -21554.258289 eV Core-core repulsion = 18177.288272 eV Total energy + Delta-G solvation = -3376.970017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95462 -40.28241 -36.87623 -34.99409 -34.53825 -33.57153 -32.68032 -30.11207 -28.88965 -28.08559 -27.10595 -25.72455 -23.04114 -21.95256 -21.39129 -20.45620 -20.03586 -17.64615 -16.85599 -16.81943 -16.67095 -16.16621 -16.09785 -15.30763 -14.86797 -14.70615 -14.42539 -13.73917 -13.72263 -13.61723 -13.20984 -13.02024 -12.74753 -12.58442 -12.54531 -12.46360 -12.18100 -11.80310 -11.72836 -11.65821 -11.02860 -10.97561 -10.60945 -10.56352 -10.47670 -10.40469 -9.82803 -9.79086 -9.66037 -9.29926 -9.13338 -9.01458 -8.32360 -5.96881 -3.99464 0.72238 0.89084 2.24810 2.38850 3.32280 3.32548 3.39855 3.43696 3.85827 4.20770 4.23507 4.47936 4.67391 4.73155 4.85082 4.93126 4.99456 5.03914 5.10605 5.13914 5.21247 5.23022 5.25708 5.26879 5.37267 5.38727 5.52207 5.65360 5.70771 5.80063 5.94630 6.04352 6.17865 6.33929 6.37623 6.46319 6.75687 6.93863 7.15420 7.61736 7.72005 7.76118 7.86563 8.03984 8.45582 9.08356 9.64459 11.14443 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036876 B = 0.002049 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.111368 B =13662.701004 C =14374.842738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.038 4.038 3 C -0.177 4.177 4 C 0.135 3.865 5 C -0.103 4.103 6 N -0.485 5.485 7 C 0.133 3.867 8 C 0.120 3.880 9 O -0.361 6.361 10 C 0.463 3.537 11 O -0.501 6.501 12 C -0.110 4.110 13 C -0.109 4.109 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.158 4.158 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.134 0.866 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.531 30.760 0.048 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.046 4.046 3 C -0.197 4.197 4 C -0.003 4.003 5 C -0.160 4.160 6 N -0.197 5.197 7 C -0.004 4.004 8 C 0.045 3.955 9 O -0.278 6.278 10 C 0.306 3.694 11 O -0.387 6.387 12 C -0.147 4.147 13 C -0.147 4.147 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.178 4.178 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.069 0.931 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.113 30.608 0.044 31.212 hybrid contribution -1.254 -0.830 -0.017 1.504 sum -7.367 29.777 0.027 30.675 Atomic orbital electron populations 1.20845 0.89921 1.03529 1.03079 1.20396 0.96999 0.92746 0.94471 1.21859 0.94724 0.98818 1.04269 1.21183 0.91227 0.93434 0.94486 1.20715 1.00344 0.91777 1.03214 1.67009 1.41375 0.97403 1.13957 1.20642 0.91366 0.92412 0.95957 1.21300 0.89673 0.80091 1.04438 1.86417 1.41275 1.15350 1.84773 1.24239 0.89184 0.83972 0.72041 1.90696 1.16695 1.86620 1.44660 1.21624 0.98426 0.89116 1.05579 1.21590 0.98084 0.91671 1.03332 1.21648 0.98140 0.94536 1.00416 1.19109 0.94913 0.90384 0.97400 1.21309 0.93107 0.91071 1.50356 0.92632 1.25047 0.94964 0.99172 0.95443 1.69983 1.09792 1.22698 1.50960 0.86547 0.80879 0.83076 0.77547 1.19764 1.21057 1.21050 1.21863 0.94585 0.99385 1.01950 0.90328 0.90643 0.91003 0.84766 0.90296 0.90614 0.90314 0.88853 0.88844 0.87776 0.87769 0.91473 0.91474 0.93188 0.93186 0.96517 0.96515 0.93079 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.06 36.01 0.36 -0.26 16 2 C -0.04 -0.31 5.92 -104.32 -0.62 -0.93 16 3 C -0.18 -1.38 9.45 -39.44 -0.37 -1.75 16 4 C 0.13 1.23 6.78 -82.59 -0.56 0.67 16 5 C -0.10 -0.62 10.17 36.00 0.37 -0.25 16 6 N -0.49 -5.59 10.19 -5.74 -0.06 -5.65 16 7 C 0.13 1.51 6.78 -82.58 -0.56 0.95 16 8 C 0.12 1.39 6.01 36.00 0.22 1.60 16 9 O -0.36 -4.36 8.66 -39.24 -0.34 -4.70 16 10 C 0.46 6.44 7.96 36.01 0.29 6.73 16 11 O -0.50 -8.59 15.73 -18.75 -0.30 -8.89 16 12 C -0.11 -1.41 5.81 -27.88 -0.16 -1.57 16 13 C -0.11 -1.86 4.50 -26.73 -0.12 -1.98 16 14 C -0.11 -2.19 5.15 -26.73 -0.14 -2.32 16 15 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 16 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 24 C -0.16 -1.56 9.13 -39.44 -0.36 -1.92 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 27 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 28 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.09 8.14 -51.92 -0.42 0.66 16 33 H 0.09 1.09 8.13 -51.93 -0.42 0.67 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.15 1.33 6.98 -52.49 -0.37 0.96 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -33.54 367.10 -8.74 -42.28 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -7.08 Total: -4.42 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -2.21 Total: -14.33 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.68 Total: -32.24 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.63 Total: -13.58 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.54 -8.74 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909319701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.676 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds