Wall clock time and date at job start Tue Mar 31 2020 07:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38672 * 120.78727 * 2 1 4 4 C 1.38182 * 119.15969 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.61612 * 180.02562 * 4 3 2 6 6 N 1.31888 * 120.76755 * 0.02562 * 4 3 2 7 7 C 1.31862 * 121.72540 * 359.97438 * 6 4 3 8 8 C 1.50695 * 119.61883 * 179.97438 * 7 6 4 9 9 O 1.45201 * 109.47187 * 179.97438 * 8 7 6 10 10 C 1.34222 * 116.99867 * 180.02562 * 9 8 7 11 11 O 1.20830 * 120.00323 * 359.72425 * 10 9 8 12 12 C 1.50706 * 120.00024 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47348 * 179.72254 * 12 10 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46808 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46847 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99683 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99722 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00073 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46848 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47295 * 119.99578 * 20 18 16 23 23 H 1.48500 * 109.47035 * 240.00179 * 20 18 16 24 24 C 1.38230 * 120.76152 * 0.27309 * 7 6 4 25 25 H 1.09000 * 109.47290 * 89.99926 * 1 2 3 26 26 H 1.09004 * 109.47114 * 210.00350 * 1 2 3 27 27 H 1.09004 * 109.47172 * 329.99915 * 1 2 3 28 28 H 1.07993 * 120.42224 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46808 * 270.02338 * 5 4 3 30 30 H 1.08992 * 109.47496 * 30.02114 * 5 4 3 31 31 H 1.08998 * 109.47395 * 150.02500 * 5 4 3 32 32 H 1.09009 * 109.47109 * 60.00035 * 8 7 6 33 33 H 1.09001 * 109.47115 * 299.99968 * 8 7 6 34 34 H 1.09001 * 109.46564 * 299.72723 * 12 10 9 35 35 H 1.08998 * 109.47012 * 59.71777 * 12 10 9 36 36 H 1.09000 * 109.46986 * 300.00089 * 13 12 10 37 37 H 1.09002 * 109.46857 * 60.00224 * 13 12 10 38 38 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 39 39 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 40 40 H 1.08996 * 109.46961 * 299.99496 * 15 14 13 41 41 H 1.08994 * 109.47402 * 59.99882 * 15 14 13 42 42 H 0.96999 * 120.00128 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.41812 * 179.70756 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 6 4.3797 2.4405 0.0000 6 7 4.2403 0.0001 -0.0016 7 6 3.5983 -1.1517 -0.0016 8 6 4.3800 -2.4400 -0.0034 9 8 3.4607 -3.5640 -0.0025 10 6 4.0006 -4.7928 -0.0033 11 8 5.2016 -4.9250 -0.0098 12 6 3.1088 -6.0077 -0.0030 13 6 3.9698 -7.2724 -0.0111 14 6 3.0644 -8.5057 -0.0102 15 6 3.9255 -9.7705 -0.0176 16 6 3.0336 -10.9853 -0.0173 17 1 1.9601 -10.8670 -0.0119 18 6 3.5882 -12.2475 -0.0240 19 7 4.8954 -12.3915 -0.0311 20 14 2.4828 -13.7534 -0.0243 21 1 1.0613 -13.3239 -0.0174 22 1 2.7489 -14.5625 -1.2408 23 1 2.7594 -14.5707 1.1842 24 6 2.2166 -1.1909 -0.0062 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6967 2.1377 0.0004 29 1 4.5674 2.7520 -1.0275 30 1 3.8077 3.2123 0.5149 31 1 5.3294 2.2891 0.5130 32 1 5.0088 -2.4847 0.8859 33 1 5.0067 -2.4835 -0.8941 34 1 2.4838 -5.9993 0.8899 35 1 2.4754 -5.9936 -0.8899 36 1 4.5948 -7.2807 -0.9040 37 1 4.6031 -7.2864 0.8759 38 1 2.4397 -8.4972 0.8830 39 1 2.4307 -8.4919 -0.8969 40 1 4.5504 -9.7792 -0.9106 41 1 4.5588 -9.7840 0.8693 42 1 5.2856 -13.2795 -0.0354 43 1 1.6964 -2.1374 -0.0110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909319701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:15 Heat of formation + Delta-G solvation = -106.180354 kcal Electronic energy + Delta-G solvation = -21555.048558 eV Core-core repulsion = 18177.288272 eV Total energy + Delta-G solvation = -3377.760286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.83865 -41.19605 -37.98883 -36.63421 -35.13259 -34.67422 -34.24959 -31.73184 -29.75139 -28.60482 -27.97562 -27.30017 -24.61568 -22.92375 -22.12873 -21.83536 -21.35429 -18.72279 -18.39076 -17.92470 -17.70937 -17.40116 -16.85704 -16.47530 -16.38740 -15.69848 -15.62520 -14.74916 -14.57753 -14.55621 -14.12261 -13.84998 -13.82350 -13.64057 -13.52409 -13.36200 -13.20396 -13.04740 -13.02703 -12.85115 -12.35724 -12.31817 -12.19259 -12.18332 -11.96976 -11.67683 -11.37601 -11.28849 -11.04502 -10.54689 -10.53141 -10.43009 -9.82097 -8.18166 -6.29788 0.03303 0.23744 1.13394 1.38045 1.41660 1.41985 1.55499 2.42559 2.63595 3.08201 3.14965 3.56005 3.69017 3.74903 3.96456 4.01600 4.08193 4.13207 4.16634 4.30529 4.42302 4.54695 4.55391 4.65392 4.66581 4.77036 4.79167 4.80574 4.84581 4.87247 5.03225 5.15637 5.15764 5.23059 5.26774 5.33362 5.36081 5.44332 5.58022 5.75001 5.79182 5.89525 6.26279 6.65730 6.89207 6.92484 7.39863 8.94149 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036876 B = 0.002049 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.111368 B =13662.701004 C =14374.842738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.173 4.173 4 C 0.119 3.881 5 C -0.101 4.101 6 N -0.516 5.516 7 C 0.111 3.889 8 C 0.122 3.878 9 O -0.348 6.348 10 C 0.468 3.532 11 O -0.540 6.540 12 C -0.099 4.099 13 C -0.102 4.102 14 C -0.096 4.096 15 C 0.017 3.983 16 C -0.540 4.540 17 H 0.067 0.933 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.169 4.169 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.167 0.833 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.064 0.936 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.262 0.738 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.773 32.241 0.058 33.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.193 4.193 4 C -0.019 4.019 5 C -0.158 4.158 6 N -0.229 5.229 7 C -0.025 4.025 8 C 0.048 3.952 9 O -0.264 6.264 10 C 0.313 3.687 11 O -0.430 6.430 12 C -0.136 4.136 13 C -0.140 4.140 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.189 4.189 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.184 0.816 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.005 0.995 41 H 0.005 0.995 42 H 0.071 0.929 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.383 32.113 0.055 33.455 hybrid contribution -0.220 -1.195 -0.022 1.215 sum -9.602 30.918 0.033 32.375 Atomic orbital electron populations 1.20912 0.87666 1.04570 1.03971 1.20788 0.98613 0.92241 0.93230 1.22238 0.94256 1.00094 1.02668 1.21775 0.92474 0.93613 0.94038 1.20803 0.99996 0.90993 1.04022 1.66979 1.42507 0.98194 1.15216 1.20589 0.92063 0.92076 0.97780 1.21270 0.89715 0.80420 1.03829 1.86401 1.40916 1.14902 1.84194 1.24431 0.88652 0.84730 0.70891 1.90694 1.18442 1.87155 1.46673 1.21518 0.97567 0.86170 1.08357 1.21372 0.97866 0.92919 1.01822 1.21436 0.97605 0.92518 1.01761 1.19076 0.94989 0.93460 0.94512 1.21793 0.93932 0.92078 1.49947 0.91489 1.26083 0.96502 1.03003 0.94908 1.70134 1.11992 1.23665 1.52035 0.85344 0.79299 0.78455 0.77601 1.18066 1.20589 1.20572 1.21987 0.94039 1.00471 1.02430 0.89343 0.90343 0.89278 0.81594 0.89398 0.88062 0.91195 0.89557 0.89554 0.84906 0.84900 0.93132 0.93134 0.91717 0.91715 0.99524 0.99517 0.92906 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.06 71.24 0.72 -0.17 16 2 C -0.04 -0.59 5.92 -19.67 -0.12 -0.70 16 3 C -0.17 -2.29 9.45 22.36 0.21 -2.07 16 4 C 0.12 2.04 6.78 42.54 0.29 2.33 16 5 C -0.10 -1.05 10.17 71.24 0.72 -0.33 16 6 N -0.52 -11.99 10.19 -172.08 -1.75 -13.74 16 7 C 0.11 2.54 6.78 42.55 0.29 2.83 16 8 C 0.12 2.94 6.01 71.23 0.43 3.37 16 9 O -0.35 -8.22 8.66 -51.34 -0.44 -8.66 16 10 C 0.47 12.82 7.96 71.24 0.57 13.39 16 11 O -0.54 -19.08 15.73 21.95 0.35 -18.73 16 12 C -0.10 -2.34 5.81 29.85 0.17 -2.17 16 13 C -0.10 -3.46 4.50 30.59 0.14 -3.32 16 14 C -0.10 -3.74 5.15 30.60 0.16 -3.58 16 15 C 0.02 0.90 4.97 29.85 0.15 1.05 16 16 C -0.54 -30.87 9.11 25.60 0.23 -30.63 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 18 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 19 N -0.94 -58.62 13.29 21.45 0.28 -58.33 16 20 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 C -0.17 -3.19 9.13 22.36 0.20 -2.98 16 25 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 26 H 0.08 0.58 8.10 -2.38 -0.02 0.56 16 27 H 0.09 0.40 8.10 -2.38 -0.02 0.38 16 28 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.09 2.15 8.13 -2.39 -0.02 2.13 16 34 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 37 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 41 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.15 2.55 6.98 -2.91 -0.02 2.53 16 Total: -1.00 -75.05 367.10 6.06 -69.00 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 0.97 Total: 6.89 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.62 Total: -23.00 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.47 Total: -72.08 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.10 Total: -27.39 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.05 6.06 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909319701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.185 kcal (2) G-P(sol) polarization free energy of solvation -75.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds