Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38251 * 120.00056 * 2 1 4 4 C 1.38217 * 119.99879 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00511 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99660 * 179.73048 * 2 1 3 8 8 C 1.50696 * 120.00418 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46980 * 288.98793 * 8 7 2 10 10 C 1.52999 * 109.47711 * 168.99015 * 8 7 2 11 11 O 1.42908 * 109.46763 * 305.00027 * 10 8 7 12 12 N 1.46499 * 109.47442 * 48.98476 * 8 7 2 13 13 C 1.46506 * 119.99584 * 54.32704 * 12 8 7 14 14 C 1.34768 * 120.00608 * 234.32754 * 12 8 7 15 15 O 1.21284 * 119.99937 * 0.02562 * 14 12 8 16 16 C 1.50706 * 120.00050 * 179.97438 * 14 12 8 17 17 C 1.53003 * 109.46670 * 180.02562 * 16 14 12 18 18 C 1.50704 * 109.46806 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99637 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00182 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00309 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99807 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47587 * 89.99911 * 22 20 18 24 24 H 1.48507 * 109.46957 * 209.99931 * 22 20 18 25 25 H 1.48504 * 109.47235 * 329.99687 * 22 20 18 26 26 H 1.08995 * 109.47425 * 89.99660 * 1 2 3 27 27 H 1.09004 * 109.47311 * 329.99750 * 1 2 3 28 28 H 1.09004 * 109.47079 * 209.99931 * 1 2 3 29 29 H 1.07997 * 120.00030 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.99774 * 180.02562 * 4 3 2 31 31 H 1.08005 * 119.99848 * 180.02562 * 5 4 3 32 32 H 1.07995 * 120.00335 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.46820 * 64.99547 * 10 8 7 34 34 H 1.08994 * 109.47761 * 184.99821 * 10 8 7 35 35 H 0.96699 * 113.99452 * 179.97438 * 11 10 8 36 36 H 1.08998 * 109.47142 * 95.08133 * 13 12 8 37 37 H 1.08995 * 109.47232 * 215.08986 * 13 12 8 38 38 H 1.09004 * 109.46763 * 335.08601 * 13 12 8 39 39 H 1.08997 * 109.47361 * 299.99892 * 16 14 12 40 40 H 1.08992 * 109.46750 * 60.00830 * 16 14 12 41 41 H 1.08998 * 109.47356 * 300.00000 * 17 16 14 42 42 H 1.08993 * 109.47787 * 60.00332 * 17 16 14 43 43 H 0.97005 * 120.00288 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0056 8 6 1.4445 -2.5021 0.0124 9 1 0.9737 -2.6447 0.9850 10 6 2.4156 -3.6531 -0.2578 11 8 3.1182 -3.4071 -1.4777 12 7 0.4150 -2.4770 -1.0295 13 6 0.7820 -2.1725 -2.4148 14 6 -0.8698 -2.7340 -0.7138 15 8 -1.1737 -2.9856 0.4330 16 6 -1.9289 -2.7076 -1.7856 17 6 -3.2899 -3.0303 -1.1656 18 6 -4.3490 -3.0045 -2.2375 19 1 -4.0784 -2.7799 -3.2586 20 6 -5.6633 -3.2675 -1.9145 21 7 -6.5876 -3.2445 -2.8498 22 14 -6.1312 -3.6565 -0.1484 23 1 -6.4679 -2.3975 0.5634 24 1 -7.3082 -4.5621 -0.1361 25 1 -4.9895 -4.3195 0.5316 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 0.8900 0.5139 28 1 -0.3633 -0.8900 0.5138 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 -0.0001 0.0014 32 1 4.1206 -2.1323 0.0010 33 1 3.1284 -3.7274 0.5634 34 1 1.8587 -4.5864 -0.3411 35 1 3.7530 -4.0979 -1.7120 36 1 0.9416 -3.1020 -2.9611 37 1 -0.0207 -1.6064 -2.8873 38 1 1.6984 -1.5823 -2.4265 39 1 -1.9623 -1.7170 -2.2391 40 1 -1.6920 -3.4488 -2.5487 41 1 -3.2569 -4.0207 -0.7118 42 1 -3.5267 -2.2888 -0.4026 43 1 -7.5122 -3.4300 -2.6226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923718720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -57.387864 kcal Electronic energy + Delta-G solvation = -24076.490391 eV Core-core repulsion = 20700.845906 eV Total energy + Delta-G solvation = -3375.644485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65516 -38.86063 -37.17259 -35.14371 -33.55498 -32.57678 -32.17529 -31.04183 -28.87413 -26.85376 -26.36815 -25.88274 -23.80454 -21.58927 -21.43826 -20.13838 -18.68685 -17.81537 -16.99070 -16.87722 -16.12604 -15.97472 -15.54684 -15.01703 -14.74438 -14.35944 -14.08469 -13.83185 -13.49467 -13.06669 -12.97128 -12.84151 -12.61485 -12.55176 -12.37301 -12.12532 -11.99708 -11.78698 -11.67651 -11.34494 -11.01709 -10.97168 -10.84911 -10.24616 -10.12615 -10.00969 -9.77322 -9.25994 -9.15379 -8.81034 -8.59076 -8.50347 -8.42375 -6.01884 -4.00454 1.26992 1.37414 3.05852 3.21829 3.38326 3.44940 3.55670 3.78101 4.07908 4.51685 4.51891 4.76597 4.90079 4.96413 5.01107 5.12017 5.18932 5.28260 5.33597 5.37344 5.48275 5.57566 5.69359 5.72258 5.74879 5.83062 5.88321 6.01311 6.04423 6.08637 6.13819 6.32387 6.40428 6.45829 6.59707 6.69737 6.78800 6.97044 7.37446 7.39354 7.44710 7.66182 7.80755 8.50000 8.61539 9.01370 9.61261 11.10990 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.004015 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.975185 B = 6972.475053 C = 7361.746472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.060 4.060 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.136 4.136 6 C -0.089 4.089 7 C -0.092 4.092 8 C 0.181 3.819 9 H 0.119 0.881 10 C 0.068 3.932 11 O -0.560 6.560 12 N -0.611 5.611 13 C 0.094 3.906 14 C 0.513 3.487 15 O -0.543 6.543 16 C -0.120 4.120 17 C 0.002 3.998 18 C -0.524 4.524 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.904 5.904 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.261 1.261 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.374 0.626 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.019 0.981 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.473 4.415 4.327 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.154 4.154 6 C -0.107 4.107 7 C -0.093 4.093 8 C 0.078 3.922 9 H 0.136 0.864 10 C -0.011 4.011 11 O -0.365 6.365 12 N -0.345 5.345 13 C -0.049 4.049 14 C 0.304 3.696 15 O -0.420 6.420 16 C -0.159 4.159 17 C -0.036 4.036 18 C -0.562 4.562 19 H 0.090 0.910 20 C -0.132 4.132 21 N -0.543 5.543 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.185 1.185 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.220 0.780 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 23.712 4.783 4.905 24.682 hybrid contribution 0.105 -0.624 0.718 0.957 sum 23.817 4.159 5.623 24.823 Atomic orbital electron populations 1.21085 0.90910 1.03449 1.02762 1.19799 0.96244 0.92363 0.97634 1.21015 0.94210 0.97441 1.01876 1.21100 0.94272 0.97929 1.00229 1.21063 0.99524 0.92606 1.02250 1.21086 0.93237 0.98133 0.98278 1.19832 0.93671 0.94000 1.01780 1.19898 0.87420 0.90900 0.94016 0.86385 1.22507 0.94026 0.97696 0.86822 1.86620 1.58316 1.50053 1.41474 1.48010 1.06637 1.71127 1.08749 1.21641 1.01143 1.00847 0.81265 1.21554 0.82681 0.74425 0.90906 1.90639 1.81091 1.48409 1.21881 1.21693 0.94616 1.03160 0.96456 1.19373 0.90441 0.97287 0.96477 1.21113 0.91289 1.48222 0.95550 0.90959 1.24964 0.96444 0.94615 0.97179 1.69912 1.01457 1.49968 1.32939 0.86807 0.78265 0.78833 0.85710 1.20248 1.21473 1.18545 0.90947 0.92098 0.90188 0.86270 0.86487 0.86500 0.85614 0.92748 0.92809 0.77959 0.92739 0.91618 0.90832 0.89677 0.89644 0.95908 0.96309 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.05 36.01 0.29 -1.46 16 2 C -0.06 -0.77 5.72 -104.63 -0.60 -1.37 16 3 C -0.13 -1.45 9.70 -39.58 -0.38 -1.83 16 4 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 5 C -0.14 -1.34 10.05 -39.59 -0.40 -1.74 16 6 C -0.09 -0.94 8.39 -39.58 -0.33 -1.27 16 7 C -0.09 -1.12 4.07 -104.62 -0.43 -1.55 16 8 C 0.18 2.32 2.17 -69.09 -0.15 2.17 16 9 H 0.12 1.71 6.78 -51.93 -0.35 1.36 16 10 C 0.07 0.66 6.02 37.16 0.22 0.89 16 11 O -0.56 -4.81 9.58 -35.23 -0.34 -5.15 16 12 N -0.61 -8.71 1.40 -175.26 -0.25 -8.96 16 13 C 0.09 1.17 8.06 59.85 0.48 1.65 16 14 C 0.51 9.32 5.70 -10.99 -0.06 9.25 16 15 O -0.54 -11.60 14.35 5.55 0.08 -11.52 16 16 C -0.12 -2.35 4.26 -27.88 -0.12 -2.47 16 17 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 18 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 19 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 22 Si 0.88 22.62 27.47 -169.99 -4.67 17.95 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 26 H 0.07 1.02 7.63 -51.93 -0.40 0.62 16 27 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 28 H 0.08 1.30 4.39 -51.93 -0.23 1.07 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 31 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 32 H 0.13 1.12 5.47 -52.49 -0.29 0.83 16 33 H 0.05 0.42 7.35 -51.93 -0.38 0.04 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.37 1.66 9.12 45.56 0.42 2.07 16 36 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.07 0.80 6.65 -51.93 -0.35 0.46 16 38 H 0.07 0.90 6.60 -51.93 -0.34 0.56 16 39 H 0.09 1.56 7.41 -51.93 -0.38 1.18 16 40 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 41 H 0.02 0.59 7.15 -51.93 -0.37 0.22 16 42 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -33.97 337.22 -7.32 -41.29 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.60 Total: 1.33 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.39 Total: -12.72 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.53 Total: -36.26 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.26 Total: -16.67 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.67 Total: 17.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.97 -7.32 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923718720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.100 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds