Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38251 * 120.00056 * 2 1 4 4 C 1.38217 * 119.99879 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00511 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99660 * 179.73048 * 2 1 3 8 8 C 1.50696 * 120.00418 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46980 * 288.98793 * 8 7 2 10 10 C 1.52999 * 109.47711 * 168.99015 * 8 7 2 11 11 O 1.42908 * 109.46763 * 305.00027 * 10 8 7 12 12 N 1.46499 * 109.47442 * 48.98476 * 8 7 2 13 13 C 1.46506 * 119.99584 * 54.32704 * 12 8 7 14 14 C 1.34768 * 120.00608 * 234.32754 * 12 8 7 15 15 O 1.21284 * 119.99937 * 0.02562 * 14 12 8 16 16 C 1.50706 * 120.00050 * 179.97438 * 14 12 8 17 17 C 1.53003 * 109.46670 * 180.02562 * 16 14 12 18 18 C 1.50704 * 109.46806 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99637 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00182 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00309 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99807 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47587 * 89.99911 * 22 20 18 24 24 H 1.48507 * 109.46957 * 209.99931 * 22 20 18 25 25 H 1.48504 * 109.47235 * 329.99687 * 22 20 18 26 26 H 1.08995 * 109.47425 * 89.99660 * 1 2 3 27 27 H 1.09004 * 109.47311 * 329.99750 * 1 2 3 28 28 H 1.09004 * 109.47079 * 209.99931 * 1 2 3 29 29 H 1.07997 * 120.00030 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.99774 * 180.02562 * 4 3 2 31 31 H 1.08005 * 119.99848 * 180.02562 * 5 4 3 32 32 H 1.07995 * 120.00335 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.46820 * 64.99547 * 10 8 7 34 34 H 1.08994 * 109.47761 * 184.99821 * 10 8 7 35 35 H 0.96699 * 113.99452 * 179.97438 * 11 10 8 36 36 H 1.08998 * 109.47142 * 95.08133 * 13 12 8 37 37 H 1.08995 * 109.47232 * 215.08986 * 13 12 8 38 38 H 1.09004 * 109.46763 * 335.08601 * 13 12 8 39 39 H 1.08997 * 109.47361 * 299.99892 * 16 14 12 40 40 H 1.08992 * 109.46750 * 60.00830 * 16 14 12 41 41 H 1.08998 * 109.47356 * 300.00000 * 17 16 14 42 42 H 1.08993 * 109.47787 * 60.00332 * 17 16 14 43 43 H 0.97005 * 120.00288 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0056 8 6 1.4445 -2.5021 0.0124 9 1 0.9737 -2.6447 0.9850 10 6 2.4156 -3.6531 -0.2578 11 8 3.1182 -3.4071 -1.4777 12 7 0.4150 -2.4770 -1.0295 13 6 0.7820 -2.1725 -2.4148 14 6 -0.8698 -2.7340 -0.7138 15 8 -1.1737 -2.9856 0.4330 16 6 -1.9289 -2.7076 -1.7856 17 6 -3.2899 -3.0303 -1.1656 18 6 -4.3490 -3.0045 -2.2375 19 1 -4.0784 -2.7799 -3.2586 20 6 -5.6633 -3.2675 -1.9145 21 7 -6.5876 -3.2445 -2.8498 22 14 -6.1312 -3.6565 -0.1484 23 1 -6.4679 -2.3975 0.5634 24 1 -7.3082 -4.5621 -0.1361 25 1 -4.9895 -4.3195 0.5316 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 0.8900 0.5139 28 1 -0.3633 -0.8900 0.5138 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 -0.0001 0.0014 32 1 4.1206 -2.1323 0.0010 33 1 3.1284 -3.7274 0.5634 34 1 1.8587 -4.5864 -0.3411 35 1 3.7530 -4.0979 -1.7120 36 1 0.9416 -3.1020 -2.9611 37 1 -0.0207 -1.6064 -2.8873 38 1 1.6984 -1.5823 -2.4265 39 1 -1.9623 -1.7170 -2.2391 40 1 -1.6920 -3.4488 -2.5487 41 1 -3.2569 -4.0207 -0.7118 42 1 -3.5267 -2.2888 -0.4026 43 1 -7.5122 -3.4300 -2.6226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923718720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -79.186551 kcal Electronic energy + Delta-G solvation = -24077.435653 eV Core-core repulsion = 20700.845906 eV Total energy + Delta-G solvation = -3376.589747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74583 -40.00339 -37.99717 -36.23754 -35.58757 -33.71363 -33.37189 -32.63360 -29.81521 -28.11656 -27.80089 -27.05580 -24.83859 -23.21492 -22.30524 -21.38740 -19.97729 -19.21748 -18.46020 -17.79232 -17.43640 -17.17761 -16.65020 -16.23509 -15.96154 -15.67277 -15.46269 -14.96590 -14.72985 -14.55365 -14.33404 -14.08998 -13.75247 -13.67729 -13.47148 -13.44039 -13.12512 -12.98513 -12.91373 -12.77050 -12.54774 -12.09353 -11.98124 -11.83817 -11.78667 -11.71715 -11.40016 -10.99233 -10.78444 -10.65434 -9.71156 -9.56767 -9.44933 -8.31760 -6.34677 0.42301 0.55014 1.32646 1.34365 1.49539 1.63892 2.05892 2.34569 2.93124 3.03880 3.37148 3.57447 3.82495 3.95849 4.05750 4.14463 4.27734 4.33424 4.35573 4.41167 4.43012 4.45929 4.56386 4.62859 4.72349 4.75855 4.83509 4.84079 4.92765 4.97910 5.08572 5.18688 5.29756 5.32201 5.43078 5.51359 5.60084 5.65505 5.67212 5.82526 6.16235 6.23074 6.39476 6.71295 6.95729 7.21065 7.30614 8.84006 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.004015 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.975185 B = 6972.475053 C = 7361.746472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.137 4.137 4 C -0.117 4.117 5 C -0.134 4.134 6 C -0.088 4.088 7 C -0.102 4.102 8 C 0.175 3.825 9 H 0.094 0.906 10 C 0.079 3.921 11 O -0.567 6.567 12 N -0.596 5.596 13 C 0.095 3.905 14 C 0.517 3.483 15 O -0.582 6.582 16 C -0.114 4.114 17 C 0.009 3.991 18 C -0.529 4.529 19 H 0.049 0.951 20 C 0.015 3.985 21 N -0.943 5.943 22 Si 0.938 3.062 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.261 1.261 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.127 0.873 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.395 0.605 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.010 0.990 42 H 0.008 0.992 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.444 4.709 4.824 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.155 4.155 4 C -0.135 4.135 5 C -0.152 4.152 6 C -0.106 4.106 7 C -0.103 4.103 8 C 0.072 3.928 9 H 0.112 0.888 10 C 0.000 4.000 11 O -0.375 6.375 12 N -0.328 5.328 13 C -0.047 4.047 14 C 0.308 3.692 15 O -0.462 6.462 16 C -0.153 4.153 17 C -0.029 4.029 18 C -0.567 4.567 19 H 0.067 0.933 20 C -0.183 4.183 21 N -0.584 5.584 22 Si 0.762 3.238 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.186 1.186 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.245 0.755 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 26.741 5.078 5.373 27.744 hybrid contribution -0.701 -0.650 0.477 1.068 sum 26.040 4.427 5.850 27.054 Atomic orbital electron populations 1.20964 0.92443 1.02346 1.01906 1.19804 0.95360 0.93527 0.99536 1.21192 0.95157 0.97211 1.01956 1.21433 0.93742 0.99339 0.99017 1.21441 1.01012 0.92056 1.00720 1.21310 0.92388 0.99457 0.97490 1.19809 0.94504 0.93126 1.02879 1.20037 0.87440 0.92953 0.92346 0.88778 1.22289 0.93960 0.95464 0.88268 1.86559 1.58860 1.51257 1.40831 1.47899 1.05696 1.69228 1.10022 1.21740 1.01412 1.01487 0.80074 1.21094 0.83726 0.74698 0.89675 1.90620 1.81922 1.50688 1.23017 1.21502 0.92778 1.04092 0.96948 1.19198 0.92338 0.96204 0.95189 1.21411 0.92411 1.47346 0.95487 0.93317 1.25784 0.96595 0.94694 1.01197 1.70023 1.02025 1.51324 1.35015 0.85841 0.78118 0.79052 0.80781 1.19374 1.20274 1.18555 0.91734 0.91686 0.92764 0.85478 0.84037 0.83710 0.83748 0.90195 0.93761 0.75508 0.91646 0.91658 0.90052 0.88571 0.88545 0.97193 0.97311 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 8.05 71.24 0.57 -2.85 16 2 C -0.08 -2.04 5.72 -19.87 -0.11 -2.15 16 3 C -0.14 -2.89 9.70 22.27 0.22 -2.67 16 4 C -0.12 -2.00 10.05 22.27 0.22 -1.77 16 5 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 6 C -0.09 -1.58 8.39 22.27 0.19 -1.40 16 7 C -0.10 -2.34 4.07 -19.87 -0.08 -2.42 16 8 C 0.18 4.35 2.17 44.24 0.10 4.44 16 9 H 0.09 2.80 6.78 -2.39 -0.02 2.78 16 10 C 0.08 1.37 6.02 71.98 0.43 1.80 16 11 O -0.57 -7.96 9.58 -148.98 -1.43 -9.39 16 12 N -0.60 -16.78 1.40 -826.79 -1.16 -17.93 16 13 C 0.09 2.23 8.06 127.77 1.03 3.26 16 14 C 0.52 19.04 5.70 87.66 0.50 19.54 16 15 O -0.58 -25.57 14.35 -3.04 -0.04 -25.62 16 16 C -0.11 -4.51 4.26 29.85 0.13 -4.38 16 17 C 0.01 0.44 3.33 29.85 0.10 0.54 16 18 C -0.53 -30.93 9.66 25.60 0.25 -30.69 16 19 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 20 C 0.01 0.90 5.47 84.65 0.46 1.36 16 21 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 22 Si 0.94 47.19 27.47 68.60 1.88 49.07 16 23 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.26 -13.07 6.54 99.48 0.65 -12.42 16 26 H 0.06 1.86 7.63 -2.39 -0.02 1.84 16 27 H 0.06 1.71 8.09 -2.38 -0.02 1.69 16 28 H 0.05 1.83 4.39 -2.38 -0.01 1.82 16 29 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.14 1.99 5.47 -2.91 -0.02 1.98 16 33 H 0.08 1.00 7.35 -2.39 -0.02 0.98 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.39 2.05 9.12 -74.06 -0.68 1.38 16 36 H 0.06 1.42 8.11 -2.39 -0.02 1.40 16 37 H 0.06 1.54 6.65 -2.39 -0.02 1.52 16 38 H 0.08 1.83 6.60 -2.38 -0.02 1.81 16 39 H 0.10 3.56 7.41 -2.39 -0.02 3.54 16 40 H 0.10 3.58 8.11 -2.39 -0.02 3.56 16 41 H 0.01 0.52 7.15 -2.39 -0.02 0.50 16 42 H 0.01 0.45 7.53 -2.39 -0.02 0.43 16 43 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 Total: -1.00 -74.40 337.22 4.06 -70.34 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.29 Total: 12.05 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.23 Total: -19.29 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -0.86 Total: -77.16 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.47 Total: -35.01 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.88 Total: 49.07 kcal Total: -74.40 4.06 -70.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923718720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.848 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds