Wall clock time and date at job start Tue Mar 31 2020 07:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.50877 * 2 1 4 4 C 1.38236 * 120.00246 * 89.72224 * 3 2 1 5 5 C 1.38235 * 120.00507 * 179.74629 * 4 3 2 6 6 C 1.38236 * 119.99525 * 0.55333 * 5 4 3 7 7 C 1.38241 * 120.00089 * 359.70198 * 6 5 4 8 8 C 1.38234 * 120.00022 * 270.00467 * 3 2 1 9 9 C 1.53098 * 109.50684 * 120.12853 * 2 1 3 10 10 N 1.47014 * 109.25940 * 63.08616 * 9 2 1 11 11 C 1.46892 * 111.00183 * 182.39346 * 10 9 2 12 12 C 1.53005 * 109.47172 * 170.32361 * 11 10 9 13 13 H 1.08996 * 109.47370 * 59.99178 * 12 11 10 14 14 O 1.42906 * 109.46682 * 299.99867 * 12 11 10 15 15 C 1.50697 * 109.47127 * 180.02562 * 12 11 10 16 16 H 1.07998 * 120.00501 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99791 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99952 * 179.97438 * 17 15 12 19 19 Si 1.86802 * 120.00105 * 359.97438 * 17 15 12 20 20 H 1.48498 * 109.47008 * 89.99844 * 19 17 15 21 21 H 1.48499 * 109.47038 * 209.99892 * 19 17 15 22 22 H 1.48501 * 109.47120 * 329.99885 * 19 17 15 23 23 C 1.47018 * 110.75024 * 58.61581 * 10 9 2 24 24 C 1.53100 * 109.25915 * 301.38753 * 23 10 9 25 25 O 1.43016 * 109.26074 * 56.84767 * 24 23 10 26 26 H 1.09002 * 109.47153 * 180.08601 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.08792 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.08773 * 1 2 3 29 29 H 1.08007 * 119.99540 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.00489 * 180.27245 * 5 4 3 31 31 H 1.08003 * 120.00266 * 179.72282 * 6 5 4 32 32 H 1.08001 * 120.00009 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.00316 * 359.97438 * 8 3 2 34 34 H 1.08998 * 109.50728 * 183.02241 * 9 2 1 35 35 H 1.09004 * 109.50796 * 303.15005 * 9 2 1 36 36 H 1.08999 * 109.47502 * 290.31576 * 11 10 9 37 37 H 1.08996 * 109.47644 * 50.31707 * 11 10 9 38 38 H 0.96707 * 113.99684 * 300.00057 * 14 12 11 39 39 H 0.97003 * 119.99747 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.50891 * 181.45368 * 23 10 9 41 41 H 1.08998 * 109.50504 * 61.32304 * 23 10 9 42 42 H 1.09002 * 109.50381 * 296.91042 * 24 23 10 43 43 H 1.08999 * 109.54344 * 176.80847 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0332 1.4205 0.0000 4 6 2.2586 2.0740 1.1971 5 6 2.7252 3.3752 1.1972 6 6 2.9556 4.0268 0.0000 7 6 2.7252 3.3751 -1.1972 8 6 2.2640 2.0720 -1.1971 9 6 2.0412 -0.7244 1.2481 10 7 1.6110 -2.1294 1.2037 11 6 2.0335 -2.8479 2.4133 12 6 1.3692 -4.2258 2.4463 13 1 1.6657 -4.7934 1.5643 14 8 -0.0513 -4.0695 2.4568 15 6 1.8022 -4.9626 3.6875 16 1 2.4834 -4.4951 4.3831 17 6 1.3286 -6.2336 3.9352 18 7 1.7069 -6.8769 5.0182 19 14 0.1498 -7.0420 2.7325 20 1 0.9226 -7.7968 1.7137 21 1 -0.7442 -7.9735 3.4661 22 1 -0.6661 -5.9981 2.0618 23 6 2.1186 -2.7916 -0.0068 24 6 1.6066 -2.0465 -1.2423 25 8 2.0076 -0.6758 -1.1664 26 1 -0.3633 -1.0277 0.0015 27 1 -0.3633 0.5125 -0.8908 28 1 -0.3634 0.5152 0.8892 29 1 2.0736 1.5666 2.1325 30 1 2.9055 3.8842 2.1325 31 1 3.3159 5.0450 0.0000 32 1 2.9048 3.8844 -2.1325 33 1 2.0840 1.5630 -2.1324 34 1 3.1298 -0.6777 1.2758 35 1 1.6331 -0.2467 2.1390 36 1 3.1169 -2.9671 2.4053 37 1 1.7370 -2.2803 3.2953 38 1 -0.3867 -3.5727 3.2157 39 1 1.3734 -7.7709 5.1926 40 1 1.7669 -3.8230 -0.0321 41 1 3.2084 -2.7781 0.0008 42 1 0.5188 -2.1060 -1.2785 43 1 2.0259 -2.4992 -2.1409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929832436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:03 Heat of formation + Delta-G solvation = -54.470383 kcal Electronic energy + Delta-G solvation = -23995.223727 eV Core-core repulsion = 20619.705753 eV Total energy + Delta-G solvation = -3375.517974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45701 -38.67586 -36.71072 -34.60368 -33.49784 -32.24080 -31.01294 -29.57247 -29.47531 -28.25398 -25.93423 -24.15575 -23.62508 -22.31850 -21.68201 -20.13125 -19.16835 -17.67803 -17.05825 -16.30847 -15.78632 -15.34309 -15.06907 -14.83411 -14.73976 -14.53753 -14.28794 -13.81164 -13.72012 -13.48903 -13.35482 -12.98229 -12.74804 -12.65589 -12.12994 -11.99739 -11.64273 -11.55530 -11.20433 -11.13755 -11.09669 -10.96905 -10.87547 -10.47985 -10.16663 -9.92624 -9.55387 -9.03235 -9.01181 -8.79527 -8.63086 -8.25869 -7.87707 -6.14627 -4.26150 1.22293 1.31498 3.37608 3.47624 3.58751 3.74635 3.79810 4.10908 4.52416 4.67032 4.80546 4.89534 4.95887 5.03289 5.07898 5.20510 5.23969 5.32958 5.40233 5.46220 5.50593 5.62521 5.67859 5.79056 5.86240 5.88378 5.93442 5.95901 6.00836 6.07019 6.11231 6.26915 6.32986 6.39919 6.42399 6.51592 6.57003 6.88641 7.17890 7.25997 7.29911 7.47308 7.64446 8.27628 8.81849 9.08912 9.50191 10.96040 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.003796 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.762684 B = 7373.637130 C = 7827.482743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.161 3.839 3 C -0.068 4.068 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.125 4.125 8 C -0.095 4.095 9 C 0.033 3.967 10 N -0.523 5.523 11 C 0.040 3.960 12 C 0.203 3.797 13 H 0.052 0.948 14 O -0.570 6.570 15 C -0.567 4.567 16 H 0.070 0.930 17 C 0.084 3.916 18 N -0.894 5.894 19 Si 0.871 3.129 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.215 1.215 23 C 0.016 3.984 24 C 0.063 3.937 25 O -0.377 6.377 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.354 0.646 39 H 0.265 0.735 40 H 0.092 0.908 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 18.867 -11.891 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.121 3.879 3 C -0.068 4.068 4 C -0.130 4.130 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.143 4.143 8 C -0.113 4.113 9 C -0.095 4.095 10 N -0.248 5.248 11 C -0.087 4.087 12 C 0.145 3.855 13 H 0.069 0.931 14 O -0.375 6.375 15 C -0.604 4.604 16 H 0.089 0.911 17 C -0.121 4.121 18 N -0.531 5.531 19 Si 0.697 3.303 20 H -0.215 1.215 21 H -0.223 1.223 22 H -0.137 1.137 23 C -0.112 4.112 24 C -0.014 4.014 25 O -0.296 6.296 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.200 0.800 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.395 18.454 -12.502 22.294 hybrid contribution 0.469 -0.456 0.436 0.786 sum 0.074 17.998 -12.067 21.669 Atomic orbital electron populations 1.22242 0.93776 1.03980 1.01888 1.20157 0.93861 0.88211 0.85643 1.19578 0.99436 0.94093 0.93705 1.21067 0.99321 0.95038 0.97590 1.21101 0.99860 0.94832 0.98135 1.21152 1.00520 0.99846 0.92702 1.21156 1.00093 0.94997 0.98029 1.21005 0.98022 0.94160 0.98128 1.22757 0.98217 0.90684 0.97890 1.62257 1.59190 1.00569 1.02773 1.22868 0.97979 0.97556 0.90302 1.19691 0.79038 0.89761 0.97001 0.93050 1.86656 1.23538 1.77401 1.49936 1.21507 1.30522 1.01006 1.07404 0.91139 1.24990 0.95310 0.96727 0.95051 1.69963 1.43919 1.13078 1.26102 0.87028 0.82219 0.79423 0.81607 1.21522 1.22264 1.13695 1.22797 0.97795 0.99934 0.90687 1.22703 1.00073 0.81062 0.97515 1.87955 1.75663 1.23652 1.42338 0.89935 0.92648 0.91716 0.85680 0.85994 0.86297 0.86181 0.85495 0.94443 0.89889 0.94887 0.91116 0.80002 0.92572 0.88973 0.94505 0.91849 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.15 37.16 0.30 -1.75 16 2 C 0.16 2.15 0.94 -91.72 -0.09 2.07 16 3 C -0.07 -0.84 4.84 -104.62 -0.51 -1.35 16 4 C -0.11 -1.27 9.15 -39.58 -0.36 -1.64 16 5 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 6 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 7 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 8 C -0.10 -1.11 9.35 -39.58 -0.37 -1.48 16 9 C 0.03 0.48 3.55 -3.71 -0.01 0.47 16 10 N -0.52 -8.70 3.96 -234.31 -0.93 -9.63 16 11 C 0.04 0.77 4.56 -3.83 -0.02 0.76 16 12 C 0.20 4.61 2.19 -27.88 -0.06 4.55 16 13 H 0.05 1.21 5.93 -51.93 -0.31 0.90 16 14 O -0.57 -12.67 10.00 -35.23 -0.35 -13.02 16 15 C -0.57 -15.50 9.34 -34.44 -0.32 -15.82 16 16 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 17 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 18 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 19 Si 0.87 21.61 26.99 -169.99 -4.59 17.03 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 22 H -0.21 -5.19 5.30 56.52 0.30 -4.89 16 23 C 0.02 0.26 5.43 -3.71 -0.02 0.23 16 24 C 0.06 0.85 6.61 37.21 0.25 1.09 16 25 O -0.38 -5.36 9.27 -35.23 -0.33 -5.69 16 26 H 0.08 1.16 6.13 -51.93 -0.32 0.84 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.13 1.32 6.27 -52.48 -0.33 0.99 16 30 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.13 1.45 7.49 -52.49 -0.39 1.05 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.13 6.66 -51.93 -0.35 0.78 16 36 H 0.03 0.66 8.12 -51.93 -0.42 0.23 16 37 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 38 H 0.35 7.10 9.04 45.56 0.41 7.51 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.09 1.54 6.37 -51.93 -0.33 1.21 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.84 6.49 -51.93 -0.34 0.51 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -31.12 335.13 -8.70 -39.82 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.83 Total: 8.20 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.50 Total: -15.39 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.15 Total: -36.00 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.68 Total: -18.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.12 -8.70 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929832436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.652 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds