Wall clock time and date at job start Tue Mar 31 2020 07:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.50877 * 2 1 4 4 C 1.38236 * 120.00246 * 89.72224 * 3 2 1 5 5 C 1.38235 * 120.00507 * 179.74629 * 4 3 2 6 6 C 1.38236 * 119.99525 * 0.55333 * 5 4 3 7 7 C 1.38241 * 120.00089 * 359.70198 * 6 5 4 8 8 C 1.38234 * 120.00022 * 270.00467 * 3 2 1 9 9 C 1.53098 * 109.50684 * 120.12853 * 2 1 3 10 10 N 1.47014 * 109.25940 * 63.08616 * 9 2 1 11 11 C 1.46892 * 111.00183 * 182.39346 * 10 9 2 12 12 C 1.53005 * 109.47172 * 170.32361 * 11 10 9 13 13 H 1.08996 * 109.47370 * 59.99178 * 12 11 10 14 14 O 1.42906 * 109.46682 * 299.99867 * 12 11 10 15 15 C 1.50697 * 109.47127 * 180.02562 * 12 11 10 16 16 H 1.07998 * 120.00501 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99791 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99952 * 179.97438 * 17 15 12 19 19 Si 1.86802 * 120.00105 * 359.97438 * 17 15 12 20 20 H 1.48498 * 109.47008 * 89.99844 * 19 17 15 21 21 H 1.48499 * 109.47038 * 209.99892 * 19 17 15 22 22 H 1.48501 * 109.47120 * 329.99885 * 19 17 15 23 23 C 1.47018 * 110.75024 * 58.61581 * 10 9 2 24 24 C 1.53100 * 109.25915 * 301.38753 * 23 10 9 25 25 O 1.43016 * 109.26074 * 56.84767 * 24 23 10 26 26 H 1.09002 * 109.47153 * 180.08601 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.08792 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.08773 * 1 2 3 29 29 H 1.08007 * 119.99540 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.00489 * 180.27245 * 5 4 3 31 31 H 1.08003 * 120.00266 * 179.72282 * 6 5 4 32 32 H 1.08001 * 120.00009 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.00316 * 359.97438 * 8 3 2 34 34 H 1.08998 * 109.50728 * 183.02241 * 9 2 1 35 35 H 1.09004 * 109.50796 * 303.15005 * 9 2 1 36 36 H 1.08999 * 109.47502 * 290.31576 * 11 10 9 37 37 H 1.08996 * 109.47644 * 50.31707 * 11 10 9 38 38 H 0.96707 * 113.99684 * 300.00057 * 14 12 11 39 39 H 0.97003 * 119.99747 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.50891 * 181.45368 * 23 10 9 41 41 H 1.08998 * 109.50504 * 61.32304 * 23 10 9 42 42 H 1.09002 * 109.50381 * 296.91042 * 24 23 10 43 43 H 1.08999 * 109.54344 * 176.80847 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0332 1.4205 0.0000 4 6 2.2586 2.0740 1.1971 5 6 2.7252 3.3752 1.1972 6 6 2.9556 4.0268 0.0000 7 6 2.7252 3.3751 -1.1972 8 6 2.2640 2.0720 -1.1971 9 6 2.0412 -0.7244 1.2481 10 7 1.6110 -2.1294 1.2037 11 6 2.0335 -2.8479 2.4133 12 6 1.3692 -4.2258 2.4463 13 1 1.6657 -4.7934 1.5643 14 8 -0.0513 -4.0695 2.4568 15 6 1.8022 -4.9626 3.6875 16 1 2.4834 -4.4951 4.3831 17 6 1.3286 -6.2336 3.9352 18 7 1.7069 -6.8769 5.0182 19 14 0.1498 -7.0420 2.7325 20 1 0.9226 -7.7968 1.7137 21 1 -0.7442 -7.9735 3.4661 22 1 -0.6661 -5.9981 2.0618 23 6 2.1186 -2.7916 -0.0068 24 6 1.6066 -2.0465 -1.2423 25 8 2.0076 -0.6758 -1.1664 26 1 -0.3633 -1.0277 0.0015 27 1 -0.3633 0.5125 -0.8908 28 1 -0.3634 0.5152 0.8892 29 1 2.0736 1.5666 2.1325 30 1 2.9055 3.8842 2.1325 31 1 3.3159 5.0450 0.0000 32 1 2.9048 3.8844 -2.1325 33 1 2.0840 1.5630 -2.1324 34 1 3.1298 -0.6777 1.2758 35 1 1.6331 -0.2467 2.1390 36 1 3.1169 -2.9671 2.4053 37 1 1.7370 -2.2803 3.2953 38 1 -0.3867 -3.5727 3.2157 39 1 1.3734 -7.7709 5.1926 40 1 1.7669 -3.8230 -0.0321 41 1 3.2084 -2.7781 0.0008 42 1 0.5188 -2.1060 -1.2785 43 1 2.0259 -2.4992 -2.1409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929832436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:03 Heat of formation + Delta-G solvation = -75.981883 kcal Electronic energy + Delta-G solvation = -23996.156535 eV Core-core repulsion = 20619.705753 eV Total energy + Delta-G solvation = -3376.450782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50800 -39.63129 -38.29557 -36.09189 -34.48257 -34.40326 -31.81343 -31.00875 -30.50832 -29.60469 -27.51922 -25.31454 -24.96489 -23.17658 -22.89569 -21.69133 -20.26310 -19.44858 -18.24025 -17.40181 -16.89165 -16.75197 -16.57564 -16.43013 -16.05101 -15.66794 -15.31564 -15.14709 -15.11886 -14.85890 -14.61807 -14.27083 -14.04051 -13.61010 -13.47782 -13.09907 -13.01065 -12.98772 -12.76401 -12.55912 -12.50121 -12.28166 -12.03890 -11.90473 -11.69472 -11.22280 -11.07075 -10.82339 -10.66995 -10.10254 -9.79893 -9.62234 -9.27385 -8.36123 -6.51158 0.41946 0.52644 1.39933 1.45968 1.76364 2.43935 2.63541 2.78760 2.95096 3.02692 3.67095 3.82303 3.93805 4.01717 4.06538 4.12225 4.16471 4.19392 4.29218 4.32588 4.42863 4.51641 4.56623 4.62570 4.67497 4.72138 4.77423 4.86420 4.91887 4.95180 4.98041 5.12210 5.18859 5.34002 5.43680 5.45713 5.59415 5.63926 5.66708 5.98285 6.03773 6.09119 6.11947 6.23929 6.61530 7.22109 7.37507 8.78156 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.003796 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.762684 B = 7373.637130 C = 7827.482743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 C -0.086 4.086 4 C -0.126 4.126 5 C -0.125 4.125 6 C -0.124 4.124 7 C -0.127 4.127 8 C -0.109 4.109 9 C 0.036 3.964 10 N -0.523 5.523 11 C 0.053 3.947 12 C 0.213 3.787 13 H 0.049 0.951 14 O -0.570 6.570 15 C -0.568 4.568 16 H 0.034 0.966 17 C 0.028 3.972 18 N -0.941 5.941 19 Si 0.939 3.061 20 H -0.286 1.286 21 H -0.298 1.298 22 H -0.201 1.201 23 C 0.013 3.987 24 C 0.068 3.932 25 O -0.384 6.384 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.125 0.875 34 H 0.026 0.974 35 H 0.092 0.908 36 H 0.021 0.979 37 H 0.072 0.928 38 H 0.366 0.634 39 H 0.267 0.733 40 H 0.082 0.918 41 H 0.030 0.970 42 H 0.067 0.933 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.763 20.773 -13.677 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.124 3.876 3 C -0.087 4.087 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.142 4.142 7 C -0.145 4.145 8 C -0.127 4.127 9 C -0.092 4.092 10 N -0.247 5.247 11 C -0.075 4.075 12 C 0.155 3.845 13 H 0.067 0.933 14 O -0.376 6.376 15 C -0.606 4.606 16 H 0.053 0.947 17 C -0.171 4.171 18 N -0.580 5.580 19 Si 0.763 3.237 20 H -0.212 1.212 21 H -0.225 1.225 22 H -0.123 1.123 23 C -0.115 4.115 24 C -0.009 4.009 25 O -0.303 6.303 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.142 0.858 34 H 0.044 0.956 35 H 0.110 0.890 36 H 0.039 0.961 37 H 0.091 0.909 38 H 0.213 0.787 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.129 20.386 -14.296 24.925 hybrid contribution 0.771 -0.943 1.039 1.601 sum -0.358 19.443 -13.258 23.536 Atomic orbital electron populations 1.22173 0.93264 1.03218 1.02570 1.20162 0.94216 0.88679 0.84505 1.19584 1.00893 0.93624 0.94560 1.21201 0.99937 0.95893 0.97333 1.21415 0.99064 0.94360 0.99480 1.21523 0.99450 1.01002 0.92196 1.21458 0.99184 0.94411 0.99407 1.21101 0.98803 0.95096 0.97728 1.22801 0.97611 0.89432 0.99361 1.62208 1.59141 1.01421 1.01940 1.22542 0.96808 0.96197 0.91935 1.19435 0.79520 0.91104 0.94433 0.93306 1.86587 1.22760 1.77775 1.50505 1.21844 1.29267 1.01191 1.08282 0.94728 1.25865 0.97125 0.97529 0.96606 1.70090 1.45905 1.13732 1.28276 0.85987 0.80023 0.78458 0.79238 1.21225 1.22513 1.12303 1.22863 0.97475 0.99813 0.91376 1.22755 1.00352 0.80638 0.97127 1.87960 1.75892 1.23851 1.42623 0.91262 0.91829 0.91201 0.85538 0.83932 0.83605 0.83942 0.85751 0.95553 0.89009 0.96089 0.90933 0.78713 0.92441 0.89963 0.95149 0.91503 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 8.15 71.98 0.59 -3.12 16 2 C 0.16 4.19 0.94 -11.51 -0.01 4.18 16 3 C -0.09 -2.03 4.84 -19.87 -0.10 -2.13 16 4 C -0.13 -2.68 9.15 22.27 0.20 -2.47 16 5 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 6 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 7 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 8 C -0.11 -2.37 9.35 22.27 0.21 -2.16 16 9 C 0.04 1.03 3.55 86.31 0.31 1.33 16 10 N -0.52 -16.99 3.96 -895.21 -3.55 -20.53 16 11 C 0.05 2.04 4.56 86.31 0.39 2.44 16 12 C 0.21 9.60 2.19 29.85 0.07 9.66 16 13 H 0.05 2.26 5.93 -2.39 -0.01 2.25 16 14 O -0.57 -24.39 10.00 -148.98 -1.49 -25.88 16 15 C -0.57 -31.57 9.34 25.60 0.24 -31.33 16 16 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 17 C 0.03 1.63 5.47 84.65 0.46 2.10 16 18 N -0.94 -58.38 13.96 21.45 0.30 -58.08 16 19 Si 0.94 44.76 26.99 68.60 1.85 46.61 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 21 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.20 -9.09 5.30 99.48 0.53 -8.56 16 23 C 0.01 0.40 5.43 86.31 0.47 0.87 16 24 C 0.07 1.71 6.61 72.02 0.48 2.18 16 25 O -0.38 -10.39 9.27 -148.98 -1.38 -11.77 16 26 H 0.07 1.84 6.13 -2.39 -0.01 1.82 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.13 2.54 6.27 -2.91 -0.02 2.52 16 30 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.12 2.68 7.49 -2.91 -0.02 2.66 16 34 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 2.42 6.66 -2.39 -0.02 2.40 16 36 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 37 H 0.07 2.73 8.04 -2.39 -0.02 2.72 16 38 H 0.37 14.07 9.04 -74.05 -0.67 13.40 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.08 2.68 6.37 -2.39 -0.02 2.67 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.66 6.49 -2.39 -0.02 1.64 16 43 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -66.65 335.13 -0.13 -66.79 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.16 Total: 27.04 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 3.97 Total: -24.17 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -3.25 Total: -78.62 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -2.87 Total: -37.65 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.85 Total: 46.61 kcal Total: -66.65 -0.13 -66.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929832436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.195 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds