Wall clock time and date at job start Tue Mar 31 2020 07:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53087 * 1 3 3 C 1.54064 * 107.69384 * 2 1 4 4 C 1.50783 * 110.08324 * 117.48426 * 2 1 3 5 5 N 1.43716 * 119.09733 * 77.06420 * 4 2 1 6 6 C 1.45338 * 115.96084 * 271.15483 * 5 4 2 7 7 C 1.53007 * 109.47230 * 326.14121 * 6 5 4 8 8 H 1.08997 * 109.46710 * 62.00731 * 7 6 5 9 9 O 1.42904 * 109.46929 * 302.01305 * 7 6 5 10 10 C 1.50698 * 109.47367 * 182.00686 * 7 6 5 11 11 H 1.07998 * 119.99694 * 0.02562 * 10 7 6 12 12 C 1.37868 * 119.99955 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99944 * 180.02562 * 12 10 7 14 14 Si 1.86802 * 120.00161 * 359.97438 * 12 10 7 15 15 H 1.48505 * 109.46633 * 90.00131 * 14 12 10 16 16 H 1.48502 * 109.47186 * 209.99826 * 14 12 10 17 17 H 1.48495 * 109.47343 * 330.00507 * 14 12 10 18 18 C 1.45587 * 117.90243 * 52.53245 * 5 4 2 19 19 C 1.52048 * 108.60382 * 280.58087 * 18 5 4 20 20 C 1.38110 * 120.36507 * 249.71813 * 19 18 5 21 21 C 1.38507 * 118.95692 * 180.33725 * 20 19 18 22 22 C 1.38292 * 120.24315 * 0.22157 * 21 20 19 23 23 C 1.38303 * 120.49778 * 359.58478 * 22 21 20 24 24 C 1.38102 * 118.50024 * 69.33733 * 19 18 5 25 25 O 1.35800 * 118.50855 * 358.56399 * 24 19 18 26 26 H 1.08994 * 109.47349 * 297.86412 * 1 2 3 27 27 H 1.09000 * 109.47187 * 57.86783 * 1 2 3 28 28 H 1.09005 * 109.46903 * 177.86570 * 1 2 3 29 29 H 1.09006 * 109.46812 * 178.84326 * 3 2 1 30 30 H 1.08999 * 109.47459 * 298.84009 * 3 2 1 31 31 H 1.09001 * 109.47265 * 58.85127 * 3 2 1 32 32 H 1.10252 * 107.28583 * 313.64565 * 4 2 1 33 33 H 1.10166 * 107.44209 * 200.81836 * 4 2 1 34 34 H 1.08999 * 109.47395 * 86.14308 * 6 5 4 35 35 H 1.09004 * 109.47186 * 206.14592 * 6 5 4 36 36 H 0.96697 * 113.99990 * 304.97524 * 9 7 6 37 37 H 0.97006 * 119.99935 * 180.02562 * 13 12 10 38 38 H 1.09088 * 110.24126 * 160.99397 * 18 5 4 39 39 H 1.09082 * 110.29487 * 40.20019 * 18 5 4 40 40 H 1.07773 * 120.56598 * 0.39046 * 20 19 18 41 41 H 1.08015 * 119.82645 * 180.09467 * 21 20 19 42 42 H 1.08050 * 119.79397 * 179.62665 * 22 21 20 43 43 H 1.07963 * 120.13551 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5309 0.0000 0.0000 3 6 1.9991 1.4678 0.0000 4 6 2.0486 -0.6536 1.2563 5 7 2.0246 -2.0868 1.3594 6 6 0.8075 -2.6652 1.9039 7 6 0.2226 -1.7234 2.9584 8 1 -0.0389 -0.7736 2.4922 9 8 1.1902 -1.4993 3.9859 10 6 -1.0121 -2.3455 3.5581 11 1 -1.3460 -3.3157 3.2210 12 6 -1.7153 -1.6760 4.5369 13 7 -2.7926 -2.2191 5.0605 14 14 -1.1373 0.0018 5.1203 15 1 -1.7699 1.0590 4.2913 16 1 -1.5221 0.1911 6.5421 17 1 0.3394 0.0890 4.9913 18 6 2.6331 -2.8575 0.2845 19 6 1.6584 -2.9181 -0.8808 20 6 1.0383 -4.1071 -1.2112 21 6 0.1609 -4.1308 -2.2827 22 6 -0.0825 -2.9794 -3.0092 23 6 0.5389 -1.7912 -2.6704 24 6 1.4055 -1.7600 -1.5893 25 8 2.0159 -0.6127 -1.1952 26 1 -0.3634 0.4803 0.9085 27 1 -0.3633 0.5466 -0.8702 28 1 -0.3633 -1.0270 -0.0383 29 1 3.0885 1.5016 0.0207 30 1 1.6373 1.9646 -0.9002 31 1 1.6031 1.9755 0.8795 32 1 1.4787 -0.2349 2.1022 33 1 3.0847 -0.3096 1.4046 34 1 0.0828 -2.8079 1.1023 35 1 1.0360 -3.6272 2.3626 36 1 1.5263 -2.3093 4.3932 37 1 -3.2876 -1.7479 5.7490 38 1 2.8504 -3.8714 0.6233 39 1 3.5575 -2.3818 -0.0456 40 1 1.2328 -5.0028 -0.6442 41 1 -0.3329 -5.0527 -2.5525 42 1 -0.7637 -3.0075 -3.8474 43 1 0.3442 -0.8958 -3.2413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930504062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:55 Heat of formation + Delta-G solvation = -44.094838 kcal Electronic energy + Delta-G solvation = -25258.810525 eV Core-core repulsion = 21883.742469 eV Total energy + Delta-G solvation = -3375.068056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81845 -37.95911 -37.17289 -35.01909 -33.62952 -32.26011 -31.14475 -29.67212 -28.89668 -27.10630 -26.62358 -25.66934 -23.09149 -22.61301 -21.31325 -20.24881 -19.54059 -17.56042 -16.99967 -16.18232 -15.89730 -15.37123 -15.12656 -14.98882 -14.76138 -14.09904 -14.00283 -13.93863 -13.57207 -13.20566 -12.82973 -12.70375 -12.37157 -12.26015 -12.02797 -11.90854 -11.75777 -11.62615 -11.47054 -11.20249 -11.06579 -10.94187 -10.90397 -10.39739 -10.33201 -9.93784 -9.80349 -8.98134 -8.76571 -8.63935 -8.38222 -8.27459 -7.44684 -6.14490 -4.25134 1.30414 1.42043 3.34299 3.43289 3.45322 3.70458 4.05691 4.32720 4.50561 4.85051 4.91040 5.00222 5.07161 5.07326 5.16980 5.20209 5.35300 5.44502 5.55023 5.64148 5.70603 5.74949 5.79905 5.88870 5.94885 5.96576 6.00778 6.09223 6.16134 6.16362 6.22425 6.37580 6.40922 6.47153 6.54523 6.65283 6.69672 6.86516 7.29668 7.47471 7.72698 7.82855 7.93803 8.29068 8.81499 9.04094 9.50402 10.96344 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.006276 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.563740 B = 4460.076567 C = 4987.411212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.091 3.909 3 C -0.138 4.138 4 C 0.065 3.935 5 N -0.586 5.586 6 C 0.074 3.926 7 C 0.191 3.809 8 H 0.057 0.943 9 O -0.574 6.574 10 C -0.562 4.562 11 H 0.071 0.929 12 C 0.085 3.915 13 N -0.893 5.893 14 Si 0.867 3.133 15 H -0.289 1.289 16 H -0.295 1.295 17 H -0.215 1.215 18 C 0.136 3.864 19 C -0.149 4.149 20 C -0.092 4.092 21 C -0.131 4.131 22 C -0.111 4.111 23 C -0.135 4.135 24 C 0.115 3.885 25 O -0.327 6.327 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.357 0.643 37 H 0.264 0.736 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.173 1.307 -13.531 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.052 3.948 3 C -0.196 4.196 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.052 4.052 7 C 0.133 3.867 8 H 0.074 0.926 9 O -0.380 6.380 10 C -0.599 4.599 11 H 0.089 0.911 12 C -0.120 4.120 13 N -0.530 5.530 14 Si 0.693 3.307 15 H -0.215 1.215 16 H -0.221 1.221 17 H -0.138 1.138 18 C 0.009 3.991 19 C -0.152 4.152 20 C -0.111 4.111 21 C -0.150 4.150 22 C -0.129 4.129 23 C -0.154 4.154 24 C 0.071 3.929 25 O -0.244 6.244 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.203 0.797 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.320 2.016 -13.340 16.398 hybrid contribution -0.747 0.135 -0.089 0.765 sum 8.573 2.151 -13.430 16.077 Atomic orbital electron populations 1.22576 0.94869 1.03373 1.02755 1.22312 0.94041 0.93309 0.85187 1.22043 1.01990 0.92955 1.02567 1.21575 1.02381 0.86077 0.96280 1.54603 1.34228 1.02842 1.39087 1.22186 0.87238 0.98713 0.97082 1.19910 0.87137 0.94524 0.85106 0.92598 1.86649 1.61369 1.35415 1.54572 1.21457 1.09278 1.06614 1.22587 0.91084 1.24962 0.93677 0.98236 0.95079 1.69958 1.17171 1.38823 1.27055 0.87087 0.83011 0.83239 0.77335 1.21536 1.22138 1.13770 1.20760 0.94651 0.98354 0.85343 1.21636 1.00790 0.93613 0.99152 1.21016 0.96267 0.97152 0.96690 1.21190 0.99132 0.98338 0.96291 1.20981 0.99632 0.92374 0.99922 1.21163 0.96373 0.98749 0.99107 1.18229 0.94094 0.85819 0.94765 1.85980 1.58220 1.37096 1.43116 0.90735 0.92319 0.91607 0.91790 0.91966 0.90678 0.87822 0.92170 0.95148 0.91580 0.79694 0.92611 0.90411 0.90212 0.85624 0.86104 0.86028 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 7.11 37.20 0.26 -2.61 16 2 C 0.09 1.38 1.09 -91.13 -0.10 1.28 16 3 C -0.14 -1.74 8.51 37.71 0.32 -1.42 16 4 C 0.07 1.08 3.94 -6.63 -0.03 1.05 16 5 N -0.59 -9.91 3.73 -240.47 -0.90 -10.81 16 6 C 0.07 1.43 4.66 -4.66 -0.02 1.41 16 7 C 0.19 4.26 1.56 -27.88 -0.04 4.22 16 8 H 0.06 1.29 4.16 -51.93 -0.22 1.07 16 9 O -0.57 -12.50 9.14 -35.23 -0.32 -12.82 16 10 C -0.56 -15.28 9.37 -34.44 -0.32 -15.60 16 11 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 12 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 13 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 14 Si 0.87 21.39 26.99 -169.99 -4.59 16.80 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 H -0.22 -5.13 5.31 56.52 0.30 -4.83 16 18 C 0.14 2.02 5.57 -5.02 -0.03 1.99 16 19 C -0.15 -2.25 4.22 -104.05 -0.44 -2.69 16 20 C -0.09 -1.27 9.62 -39.53 -0.38 -1.65 16 21 C -0.13 -1.65 10.05 -39.46 -0.40 -2.05 16 22 C -0.11 -1.38 10.02 -39.54 -0.40 -1.77 16 23 C -0.14 -1.87 9.93 -39.43 -0.39 -2.26 16 24 C 0.11 1.77 4.14 -39.50 -0.16 1.61 16 25 O -0.33 -5.16 9.31 -19.11 -0.18 -5.34 16 26 H 0.07 1.24 7.04 -51.93 -0.37 0.88 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.20 6.16 -51.93 -0.32 0.88 16 29 H 0.06 0.75 8.02 -51.93 -0.42 0.34 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.93 4.49 -51.21 -0.23 1.70 16 33 H 0.06 0.95 7.86 -51.26 -0.40 0.55 16 34 H 0.03 0.63 6.28 -51.93 -0.33 0.30 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.36 7.02 9.02 45.56 0.41 7.43 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.08 1.05 7.97 -51.88 -0.41 0.63 16 39 H 0.08 1.15 8.04 -51.88 -0.42 0.73 16 40 H 0.13 1.52 8.00 -52.61 -0.42 1.10 16 41 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 42 H 0.12 1.19 8.06 -52.46 -0.42 0.77 16 43 H 0.12 1.52 8.05 -52.51 -0.42 1.10 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -30.65 327.99 -8.22 -38.87 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.73 Total: 10.77 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -2.22 Total: -16.17 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.12 Total: -37.06 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.50 Total: -18.16 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.59 Total: 16.80 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.65 -8.22 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930504062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.221 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds