Wall clock time and date at job start Tue Mar 31 2020 07:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53087 * 1 3 3 C 1.54064 * 107.69384 * 2 1 4 4 C 1.50783 * 110.08324 * 117.48426 * 2 1 3 5 5 N 1.43716 * 119.09733 * 77.06420 * 4 2 1 6 6 C 1.45338 * 115.96084 * 271.15483 * 5 4 2 7 7 C 1.53007 * 109.47230 * 326.14121 * 6 5 4 8 8 H 1.08997 * 109.46710 * 62.00731 * 7 6 5 9 9 O 1.42904 * 109.46929 * 302.01305 * 7 6 5 10 10 C 1.50698 * 109.47367 * 182.00686 * 7 6 5 11 11 H 1.07998 * 119.99694 * 0.02562 * 10 7 6 12 12 C 1.37868 * 119.99955 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99944 * 180.02562 * 12 10 7 14 14 Si 1.86802 * 120.00161 * 359.97438 * 12 10 7 15 15 H 1.48505 * 109.46633 * 90.00131 * 14 12 10 16 16 H 1.48502 * 109.47186 * 209.99826 * 14 12 10 17 17 H 1.48495 * 109.47343 * 330.00507 * 14 12 10 18 18 C 1.45587 * 117.90243 * 52.53245 * 5 4 2 19 19 C 1.52048 * 108.60382 * 280.58087 * 18 5 4 20 20 C 1.38110 * 120.36507 * 249.71813 * 19 18 5 21 21 C 1.38507 * 118.95692 * 180.33725 * 20 19 18 22 22 C 1.38292 * 120.24315 * 0.22157 * 21 20 19 23 23 C 1.38303 * 120.49778 * 359.58478 * 22 21 20 24 24 C 1.38102 * 118.50024 * 69.33733 * 19 18 5 25 25 O 1.35800 * 118.50855 * 358.56399 * 24 19 18 26 26 H 1.08994 * 109.47349 * 297.86412 * 1 2 3 27 27 H 1.09000 * 109.47187 * 57.86783 * 1 2 3 28 28 H 1.09005 * 109.46903 * 177.86570 * 1 2 3 29 29 H 1.09006 * 109.46812 * 178.84326 * 3 2 1 30 30 H 1.08999 * 109.47459 * 298.84009 * 3 2 1 31 31 H 1.09001 * 109.47265 * 58.85127 * 3 2 1 32 32 H 1.10252 * 107.28583 * 313.64565 * 4 2 1 33 33 H 1.10166 * 107.44209 * 200.81836 * 4 2 1 34 34 H 1.08999 * 109.47395 * 86.14308 * 6 5 4 35 35 H 1.09004 * 109.47186 * 206.14592 * 6 5 4 36 36 H 0.96697 * 113.99990 * 304.97524 * 9 7 6 37 37 H 0.97006 * 119.99935 * 180.02562 * 13 12 10 38 38 H 1.09088 * 110.24126 * 160.99397 * 18 5 4 39 39 H 1.09082 * 110.29487 * 40.20019 * 18 5 4 40 40 H 1.07773 * 120.56598 * 0.39046 * 20 19 18 41 41 H 1.08015 * 119.82645 * 180.09467 * 21 20 19 42 42 H 1.08050 * 119.79397 * 179.62665 * 22 21 20 43 43 H 1.07963 * 120.13551 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5309 0.0000 0.0000 3 6 1.9991 1.4678 0.0000 4 6 2.0486 -0.6536 1.2563 5 7 2.0246 -2.0868 1.3594 6 6 0.8075 -2.6652 1.9039 7 6 0.2226 -1.7234 2.9584 8 1 -0.0389 -0.7736 2.4922 9 8 1.1902 -1.4993 3.9859 10 6 -1.0121 -2.3455 3.5581 11 1 -1.3460 -3.3157 3.2210 12 6 -1.7153 -1.6760 4.5369 13 7 -2.7926 -2.2191 5.0605 14 14 -1.1373 0.0018 5.1203 15 1 -1.7699 1.0590 4.2913 16 1 -1.5221 0.1911 6.5421 17 1 0.3394 0.0890 4.9913 18 6 2.6331 -2.8575 0.2845 19 6 1.6584 -2.9181 -0.8808 20 6 1.0383 -4.1071 -1.2112 21 6 0.1609 -4.1308 -2.2827 22 6 -0.0825 -2.9794 -3.0092 23 6 0.5389 -1.7912 -2.6704 24 6 1.4055 -1.7600 -1.5893 25 8 2.0159 -0.6127 -1.1952 26 1 -0.3634 0.4803 0.9085 27 1 -0.3633 0.5466 -0.8702 28 1 -0.3633 -1.0270 -0.0383 29 1 3.0885 1.5016 0.0207 30 1 1.6373 1.9646 -0.9002 31 1 1.6031 1.9755 0.8795 32 1 1.4787 -0.2349 2.1022 33 1 3.0847 -0.3096 1.4046 34 1 0.0828 -2.8079 1.1023 35 1 1.0360 -3.6272 2.3626 36 1 1.5263 -2.3093 4.3932 37 1 -3.2876 -1.7479 5.7490 38 1 2.8504 -3.8714 0.6233 39 1 3.5575 -2.3818 -0.0456 40 1 1.2328 -5.0028 -0.6442 41 1 -0.3329 -5.0527 -2.5525 42 1 -0.7637 -3.0075 -3.8474 43 1 0.3442 -0.8958 -3.2413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930504062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:55 Heat of formation + Delta-G solvation = -64.902491 kcal Electronic energy + Delta-G solvation = -25259.712813 eV Core-core repulsion = 21883.742469 eV Total energy + Delta-G solvation = -3375.970344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.98655 -39.19610 -38.54697 -36.58167 -34.75648 -34.41135 -32.32226 -30.89474 -30.43837 -28.30699 -27.88210 -27.32343 -24.49251 -23.71125 -22.77192 -21.47826 -20.89631 -19.47331 -18.23036 -17.41831 -17.13862 -16.76705 -16.71984 -16.43721 -16.25997 -15.61772 -15.35026 -15.30600 -14.85284 -14.73631 -14.31442 -13.94459 -13.59824 -13.51143 -13.27681 -13.14117 -13.13372 -12.96984 -12.82193 -12.75702 -12.50903 -12.45079 -12.24681 -12.09136 -11.76658 -11.56306 -11.02330 -10.88912 -10.80043 -10.14112 -9.81541 -9.46663 -8.78677 -8.34926 -6.48933 0.24494 0.38118 1.37548 1.44193 1.73497 2.35154 2.43088 2.89511 3.02914 3.08196 3.71583 3.78757 3.89251 3.90556 3.96962 4.08118 4.15918 4.27829 4.28321 4.41378 4.47359 4.52849 4.58262 4.62739 4.69950 4.72705 4.81668 4.86338 4.95604 5.00188 5.05067 5.08781 5.14785 5.24609 5.41470 5.47665 5.51408 5.53620 5.58785 5.85384 6.09348 6.34819 6.56266 6.61843 6.67375 7.21425 7.36664 8.79482 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.006276 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.563740 B = 4460.076567 C = 4987.411212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 C -0.134 4.134 4 C 0.065 3.935 5 N -0.586 5.586 6 C 0.094 3.906 7 C 0.203 3.797 8 H 0.056 0.944 9 O -0.573 6.573 10 C -0.562 4.562 11 H 0.033 0.967 12 C 0.030 3.970 13 N -0.941 5.941 14 Si 0.931 3.069 15 H -0.284 1.284 16 H -0.298 1.298 17 H -0.199 1.199 18 C 0.137 3.863 19 C -0.166 4.166 20 C -0.104 4.104 21 C -0.135 4.135 22 C -0.111 4.111 23 C -0.145 4.145 24 C 0.092 3.908 25 O -0.330 6.330 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.014 0.986 35 H 0.063 0.937 36 H 0.368 0.632 37 H 0.266 0.734 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.150 0.850 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.483 2.267 -14.754 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.051 3.949 3 C -0.192 4.192 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.033 4.033 7 C 0.146 3.854 8 H 0.073 0.927 9 O -0.380 6.380 10 C -0.600 4.600 11 H 0.051 0.949 12 C -0.170 4.170 13 N -0.580 5.580 14 Si 0.755 3.245 15 H -0.211 1.211 16 H -0.225 1.225 17 H -0.121 1.121 18 C 0.010 3.990 19 C -0.168 4.168 20 C -0.123 4.123 21 C -0.153 4.153 22 C -0.129 4.129 23 C -0.163 4.163 24 C 0.049 3.951 25 O -0.248 6.248 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.215 0.785 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.168 0.832 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.656 2.967 -14.583 18.304 hybrid contribution -1.184 -0.283 0.215 1.236 sum 9.473 2.683 -14.368 17.418 Atomic orbital electron populations 1.22504 0.95839 1.01721 1.02865 1.22303 0.93215 0.94669 0.84687 1.22045 1.02671 0.91032 1.03429 1.21589 1.02632 0.85716 0.96340 1.54574 1.32575 1.03328 1.40289 1.21770 0.87916 0.97855 0.95746 1.19638 0.85573 0.94655 0.85580 0.92652 1.86581 1.60731 1.36164 1.54493 1.21789 1.10919 1.05166 1.22169 0.94879 1.25819 0.93714 1.01988 0.95431 1.70090 1.18891 1.40708 1.28303 0.86095 0.83319 0.78672 0.76377 1.21054 1.22529 1.12062 1.20817 0.94618 0.98697 0.84843 1.21685 1.01435 0.94210 0.99509 1.21274 0.96444 0.97249 0.97326 1.21552 0.98552 0.99524 0.95651 1.21357 0.99354 0.91747 1.00402 1.21407 0.96163 0.99885 0.98839 1.18490 0.95160 0.85800 0.95696 1.85984 1.58511 1.37314 1.43008 0.91719 0.90886 0.94180 0.90809 0.90925 0.90033 0.89857 0.91080 0.96815 0.91830 0.78458 0.92543 0.89211 0.89671 0.84545 0.83679 0.83221 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.40 7.11 72.01 0.51 -4.89 16 2 C 0.09 2.61 1.09 -11.12 -0.01 2.60 16 3 C -0.13 -3.07 8.51 72.34 0.62 -2.45 16 4 C 0.07 2.07 3.94 86.18 0.34 2.41 16 5 N -0.59 -19.19 3.73 -914.70 -3.41 -22.60 16 6 C 0.09 3.62 4.66 86.60 0.40 4.03 16 7 C 0.20 9.03 1.56 29.85 0.05 9.08 16 8 H 0.06 2.52 4.16 -2.39 -0.01 2.51 16 9 O -0.57 -24.06 9.14 -148.98 -1.36 -25.42 16 10 C -0.56 -31.17 9.37 25.60 0.24 -30.93 16 11 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 12 C 0.03 1.72 5.47 84.65 0.46 2.18 16 13 N -0.94 -58.25 13.96 21.44 0.30 -57.96 16 14 Si 0.93 44.22 26.99 68.60 1.85 46.07 16 15 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 16 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 17 H -0.20 -8.85 5.31 99.48 0.53 -8.32 16 18 C 0.14 3.90 5.57 86.24 0.48 4.38 16 19 C -0.17 -4.83 4.22 -19.49 -0.08 -4.91 16 20 C -0.10 -2.73 9.62 22.30 0.21 -2.52 16 21 C -0.13 -3.13 10.05 22.35 0.22 -2.91 16 22 C -0.11 -2.51 10.02 22.30 0.22 -2.28 16 23 C -0.14 -3.76 9.93 22.37 0.22 -3.54 16 24 C 0.09 2.74 4.14 22.32 0.09 2.83 16 25 O -0.33 -9.94 9.31 -91.31 -0.85 -10.79 16 26 H 0.06 2.12 7.04 -2.39 -0.02 2.10 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.45 6.16 -2.38 -0.01 1.43 16 29 H 0.07 1.54 8.02 -2.38 -0.02 1.52 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.99 4.49 -1.72 -0.01 2.98 16 33 H 0.07 2.10 7.86 -1.76 -0.01 2.08 16 34 H 0.01 0.58 6.28 -2.39 -0.01 0.56 16 35 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.37 13.91 9.02 -74.06 -0.67 13.24 16 37 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 38 H 0.09 2.29 7.97 -2.34 -0.02 2.27 16 39 H 0.09 2.33 8.04 -2.34 -0.02 2.31 16 40 H 0.14 3.15 8.00 -3.03 -0.02 3.12 16 41 H 0.15 2.59 8.06 -2.90 -0.02 2.56 16 42 H 0.15 2.48 8.06 -2.88 -0.02 2.45 16 43 H 0.14 3.07 8.05 -2.93 -0.02 3.05 16 Total: -1.00 -66.08 327.99 0.68 -65.39 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.17 Total: 32.21 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.98 Total: -26.91 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.11 Total: -80.56 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -2.21 Total: -36.21 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.85 Total: 46.07 kcal Total: -66.08 0.68 -65.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930504062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.491 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds