Wall clock time and date at job start Tue Mar 31 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 119.99969 * 2 1 4 4 C 1.38210 * 120.00055 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99611 * 359.70198 * 4 3 2 6 6 C 1.38209 * 120.00308 * 0.55216 * 5 4 3 7 7 C 1.50703 * 120.00183 * 179.74270 * 6 5 4 8 8 H 1.08999 * 109.46442 * 159.72575 * 7 6 5 9 9 O 1.42900 * 109.46939 * 39.72850 * 7 6 5 10 10 C 1.52996 * 109.46916 * 279.72643 * 7 6 5 11 11 N 1.46903 * 109.46653 * 178.51440 * 10 7 6 12 12 C 1.47436 * 111.00109 * 55.72382 * 11 10 7 13 13 C 1.54323 * 107.23354 * 123.25331 * 12 11 10 14 14 C 1.55135 * 103.01655 * 22.28688 * 13 12 11 15 15 O 1.42904 * 110.99326 * 82.43880 * 14 13 12 16 16 C 1.50704 * 110.99004 * 206.25441 * 14 13 12 17 17 H 1.08003 * 120.00197 * 112.26578 * 16 14 13 18 18 C 1.37878 * 119.99723 * 292.26725 * 16 14 13 19 19 N 1.31513 * 120.00164 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99749 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47198 * 89.99916 * 20 18 16 22 22 H 1.48505 * 109.46591 * 210.00076 * 20 18 16 23 23 H 1.48494 * 109.46903 * 329.99465 * 20 18 16 24 24 C 1.47847 * 110.99728 * 176.56726 * 11 10 7 25 25 C 1.38212 * 119.99937 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47595 * 270.02289 * 1 2 3 27 27 H 1.09002 * 109.47348 * 30.02855 * 1 2 3 28 28 H 1.08999 * 109.47205 * 150.01959 * 1 2 3 29 29 H 1.08002 * 120.00107 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.99868 * 179.97438 * 4 3 2 31 31 H 1.08006 * 119.99822 * 180.30113 * 5 4 3 32 32 H 0.96698 * 113.99653 * 299.99882 * 9 7 6 33 33 H 1.09004 * 109.47291 * 58.51690 * 10 7 6 34 34 H 1.09000 * 109.47113 * 298.51190 * 10 7 6 35 35 H 1.08998 * 109.88997 * 242.66056 * 12 11 10 36 36 H 1.09006 * 109.88937 * 3.85530 * 12 11 10 37 37 H 1.08999 * 110.70491 * 140.66798 * 13 12 11 38 38 H 1.08994 * 110.70771 * 263.72919 * 13 12 11 39 39 H 0.96697 * 113.99869 * 67.73093 * 15 14 13 40 40 H 0.96998 * 119.99937 * 180.02562 * 19 18 16 41 41 H 1.09001 * 110.37343 * 332.46242 * 24 11 10 42 42 H 1.08998 * 110.37269 * 94.80735 * 24 11 10 43 43 H 1.08004 * 119.99661 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0073 6 6 3.5806 -1.1970 0.0020 7 6 4.3341 -2.5021 0.0035 8 1 3.6791 -3.2993 0.3551 9 8 5.4654 -2.3979 0.8703 10 6 4.8070 -2.8196 -1.4165 11 7 5.5719 -4.0737 -1.4089 12 6 4.7785 -5.1731 -0.8296 13 6 4.7124 -6.2955 -1.8866 14 6 5.9450 -6.0047 -2.7826 15 8 7.1363 -6.5423 -2.2048 16 6 5.7364 -6.5367 -4.1771 17 1 5.6321 -5.8525 -5.0062 18 6 5.6785 -7.8971 -4.3944 19 7 5.8059 -8.7302 -3.3849 20 14 5.4206 -8.5566 -6.1230 21 1 6.7382 -8.7590 -6.7773 22 1 4.6971 -9.8518 -6.0557 23 1 4.6213 -7.5835 -6.9099 24 6 5.9764 -4.4559 -2.7786 25 6 2.1981 -1.1970 0.0005 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3633 -0.8901 -0.5135 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1327 0.0001 31 1 5.3517 -0.0001 0.0126 32 1 6.0925 -1.7067 0.6171 33 1 5.4407 -2.0097 -1.7780 34 1 3.9427 -2.9251 -2.0722 35 1 5.2620 -5.5431 0.0745 36 1 3.7727 -4.8224 -0.5979 37 1 4.8009 -7.2744 -1.4154 38 1 3.7896 -6.2287 -2.4626 39 1 7.1625 -7.5087 -2.1853 40 1 5.7656 -9.6872 -3.5378 41 1 5.2690 -4.0602 -3.5075 42 1 6.9830 -4.0961 -2.9914 43 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930819155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:23 Heat of formation + Delta-G solvation = -74.220249 kcal Electronic energy + Delta-G solvation = -23446.041986 eV Core-core repulsion = 20069.667594 eV Total energy + Delta-G solvation = -3376.374392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95350 -38.45598 -36.76030 -34.43758 -32.83873 -32.04472 -31.77988 -30.00280 -28.19961 -27.16308 -26.89148 -24.46057 -23.08422 -22.32564 -20.66755 -19.69807 -19.39797 -17.40994 -16.99339 -16.02772 -15.99230 -15.10132 -14.96229 -14.90739 -14.62744 -14.21539 -14.00638 -13.72915 -13.60684 -13.24016 -12.60313 -12.46875 -12.46164 -12.30043 -12.16833 -11.72264 -11.63143 -11.24247 -11.22230 -11.17060 -11.03291 -10.84507 -10.60334 -10.43066 -10.27603 -9.91928 -9.80058 -9.21951 -8.91535 -8.72722 -8.57021 -8.03750 -7.54533 -6.21787 -4.29874 1.18681 1.24606 3.21769 3.28859 3.31601 3.57371 4.26613 4.38261 4.55560 4.66219 4.73027 4.91983 5.00277 5.07738 5.12310 5.14471 5.27844 5.36728 5.39602 5.52637 5.61007 5.69828 5.84991 5.88037 5.91574 5.99206 6.02625 6.15521 6.21657 6.31255 6.41938 6.48615 6.54520 6.70033 6.85909 6.89758 7.08950 7.45090 7.48334 7.64771 7.71870 7.82748 7.88112 8.15409 8.72048 9.39275 9.64431 10.85302 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.003448 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.241336 B = 8118.856540 C = 8594.521356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.104 4.104 7 C 0.148 3.852 8 H 0.106 0.894 9 O -0.539 6.539 10 C 0.025 3.975 11 N -0.515 5.515 12 C 0.046 3.954 13 C -0.148 4.148 14 C 0.254 3.746 15 O -0.580 6.580 16 C -0.537 4.537 17 H 0.061 0.939 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.057 3.943 25 C -0.111 4.111 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.369 0.631 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.382 0.618 40 H 0.268 0.732 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.963 16.334 6.725 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.132 4.132 5 C -0.135 4.135 6 C -0.105 4.105 7 C 0.089 3.911 8 H 0.124 0.876 9 O -0.343 6.343 10 C -0.104 4.104 11 N -0.239 5.239 12 C -0.082 4.082 13 C -0.187 4.187 14 C 0.213 3.787 15 O -0.389 6.389 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.728 3.272 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.070 4.070 25 C -0.129 4.129 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.217 0.783 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.233 0.767 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.679 16.367 7.446 19.552 hybrid contribution -0.894 -0.628 -1.858 2.155 sum -8.573 15.739 5.588 18.773 Atomic orbital electron populations 1.20797 0.91190 1.02833 1.02311 1.19909 0.96077 0.93112 0.99516 1.21013 0.94306 0.97390 1.01635 1.21087 0.94289 0.97862 0.99991 1.20891 0.99871 0.91979 1.00733 1.20676 0.94423 0.96151 0.99262 1.20964 0.87027 0.92780 0.90357 0.87592 1.86645 1.34438 1.60014 1.53218 1.22900 0.97005 0.95005 0.95497 1.63625 1.38167 1.01557 1.20564 1.22837 0.94249 0.92077 0.99016 1.23294 1.00720 0.97827 0.96908 1.19477 0.81802 0.87255 0.90163 1.86109 1.41519 1.27114 1.84183 1.21596 1.50236 0.92081 0.93611 0.92102 1.25006 0.93818 0.96807 0.97494 1.69587 1.50380 1.03210 1.30487 0.86461 0.78395 0.78246 0.84106 1.20392 1.21071 1.19867 1.23045 0.99527 0.97432 0.86994 1.20913 0.93414 0.97810 1.00771 0.91180 0.91599 0.91415 0.86264 0.86035 0.86086 0.78345 0.91011 0.94399 0.91362 0.94808 0.90813 0.92794 0.76720 0.92217 0.93787 0.91116 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.13 -1.22 9.70 -39.59 -0.38 -1.61 16 4 C -0.11 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.12 -1.28 9.32 -39.58 -0.37 -1.65 16 6 C -0.10 -1.29 4.97 -104.63 -0.52 -1.81 16 7 C 0.15 2.09 2.92 -27.88 -0.08 2.01 16 8 H 0.11 1.57 6.17 -51.93 -0.32 1.25 16 9 O -0.54 -7.97 13.02 -35.23 -0.46 -8.43 16 10 C 0.02 0.40 4.45 -3.82 -0.02 0.38 16 11 N -0.52 -10.17 5.11 -231.25 -1.18 -11.35 16 12 C 0.05 0.92 6.15 -2.84 -0.02 0.91 16 13 C -0.15 -3.47 5.63 -24.91 -0.14 -3.61 16 14 C 0.25 6.42 0.89 -89.63 -0.08 6.34 16 15 O -0.58 -15.69 13.18 -35.23 -0.46 -16.15 16 16 C -0.54 -14.50 8.25 -34.44 -0.28 -14.78 16 17 H 0.06 1.63 7.77 -52.48 -0.41 1.22 16 18 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 19 N -0.90 -24.13 10.77 55.43 0.60 -23.53 16 20 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.06 1.27 5.90 -2.30 -0.01 1.25 16 25 C -0.11 -1.30 9.32 -39.59 -0.37 -1.67 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.12 1.12 6.78 -52.48 -0.36 0.76 16 32 H 0.37 4.27 7.50 45.56 0.34 4.61 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.04 0.62 8.01 -51.93 -0.42 0.20 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.03 0.60 6.05 -51.93 -0.31 0.29 16 37 H 0.07 1.83 7.83 -51.93 -0.41 1.42 16 38 H 0.05 1.27 8.04 -51.93 -0.42 0.85 16 39 H 0.38 10.46 6.93 45.56 0.32 10.78 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.04 0.94 7.59 -51.93 -0.39 0.55 16 42 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.12 1.32 8.04 -52.48 -0.42 0.90 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -29.54 345.54 -9.65 -39.19 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -5.31 Total: 15.44 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -3.02 Total: -16.03 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.58 Total: -34.88 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.92 Total: -24.58 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.54 -9.65 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.026 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds