Wall clock time and date at job start Tue Mar 31 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 119.99969 * 2 1 4 4 C 1.38210 * 120.00055 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99611 * 359.70198 * 4 3 2 6 6 C 1.38209 * 120.00308 * 0.55216 * 5 4 3 7 7 C 1.50703 * 120.00183 * 179.74270 * 6 5 4 8 8 H 1.08999 * 109.46442 * 159.72575 * 7 6 5 9 9 O 1.42900 * 109.46939 * 39.72850 * 7 6 5 10 10 C 1.52996 * 109.46916 * 279.72643 * 7 6 5 11 11 N 1.46903 * 109.46653 * 178.51440 * 10 7 6 12 12 C 1.47436 * 111.00109 * 55.72382 * 11 10 7 13 13 C 1.54323 * 107.23354 * 123.25331 * 12 11 10 14 14 C 1.55135 * 103.01655 * 22.28688 * 13 12 11 15 15 O 1.42904 * 110.99326 * 82.43880 * 14 13 12 16 16 C 1.50704 * 110.99004 * 206.25441 * 14 13 12 17 17 H 1.08003 * 120.00197 * 112.26578 * 16 14 13 18 18 C 1.37878 * 119.99723 * 292.26725 * 16 14 13 19 19 N 1.31513 * 120.00164 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99749 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47198 * 89.99916 * 20 18 16 22 22 H 1.48505 * 109.46591 * 210.00076 * 20 18 16 23 23 H 1.48494 * 109.46903 * 329.99465 * 20 18 16 24 24 C 1.47847 * 110.99728 * 176.56726 * 11 10 7 25 25 C 1.38212 * 119.99937 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.47595 * 270.02289 * 1 2 3 27 27 H 1.09002 * 109.47348 * 30.02855 * 1 2 3 28 28 H 1.08999 * 109.47205 * 150.01959 * 1 2 3 29 29 H 1.08002 * 120.00107 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.99868 * 179.97438 * 4 3 2 31 31 H 1.08006 * 119.99822 * 180.30113 * 5 4 3 32 32 H 0.96698 * 113.99653 * 299.99882 * 9 7 6 33 33 H 1.09004 * 109.47291 * 58.51690 * 10 7 6 34 34 H 1.09000 * 109.47113 * 298.51190 * 10 7 6 35 35 H 1.08998 * 109.88997 * 242.66056 * 12 11 10 36 36 H 1.09006 * 109.88937 * 3.85530 * 12 11 10 37 37 H 1.08999 * 110.70491 * 140.66798 * 13 12 11 38 38 H 1.08994 * 110.70771 * 263.72919 * 13 12 11 39 39 H 0.96697 * 113.99869 * 67.73093 * 15 14 13 40 40 H 0.96998 * 119.99937 * 180.02562 * 19 18 16 41 41 H 1.09001 * 110.37343 * 332.46242 * 24 11 10 42 42 H 1.08998 * 110.37269 * 94.80735 * 24 11 10 43 43 H 1.08004 * 119.99661 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0073 6 6 3.5806 -1.1970 0.0020 7 6 4.3341 -2.5021 0.0035 8 1 3.6791 -3.2993 0.3551 9 8 5.4654 -2.3979 0.8703 10 6 4.8070 -2.8196 -1.4165 11 7 5.5719 -4.0737 -1.4089 12 6 4.7785 -5.1731 -0.8296 13 6 4.7124 -6.2955 -1.8866 14 6 5.9450 -6.0047 -2.7826 15 8 7.1363 -6.5423 -2.2048 16 6 5.7364 -6.5367 -4.1771 17 1 5.6321 -5.8525 -5.0062 18 6 5.6785 -7.8971 -4.3944 19 7 5.8059 -8.7302 -3.3849 20 14 5.4206 -8.5566 -6.1230 21 1 6.7382 -8.7590 -6.7773 22 1 4.6971 -9.8518 -6.0557 23 1 4.6213 -7.5835 -6.9099 24 6 5.9764 -4.4559 -2.7786 25 6 2.1981 -1.1970 0.0005 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3633 -0.8901 -0.5135 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1327 0.0001 31 1 5.3517 -0.0001 0.0126 32 1 6.0925 -1.7067 0.6171 33 1 5.4407 -2.0097 -1.7780 34 1 3.9427 -2.9251 -2.0722 35 1 5.2620 -5.5431 0.0745 36 1 3.7727 -4.8224 -0.5979 37 1 4.8009 -7.2744 -1.4154 38 1 3.7896 -6.2287 -2.4626 39 1 7.1625 -7.5087 -2.1853 40 1 5.7656 -9.6872 -3.5378 41 1 5.2690 -4.0602 -3.5075 42 1 6.9830 -4.0961 -2.9914 43 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930819155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:23 Heat of formation + Delta-G solvation = -95.544824 kcal Electronic energy + Delta-G solvation = -23446.966689 eV Core-core repulsion = 20069.667594 eV Total energy + Delta-G solvation = -3377.299095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.95132 -39.94793 -38.02803 -36.20885 -34.11633 -33.61832 -32.78658 -31.52387 -29.98032 -28.48478 -27.74028 -26.22073 -24.43289 -23.14590 -21.83215 -21.40345 -20.94542 -19.14708 -18.20923 -17.22459 -17.02779 -16.90831 -16.57680 -16.16033 -15.95818 -15.63342 -15.24321 -14.81123 -14.58220 -14.29469 -14.08420 -13.94856 -13.88185 -13.52720 -13.14098 -13.10773 -13.02075 -12.91204 -12.67913 -12.60687 -12.41703 -12.27121 -12.20452 -12.05021 -11.75629 -11.73170 -11.21458 -10.91408 -10.60302 -10.07491 -9.73811 -9.51856 -9.14572 -8.23911 -6.40114 0.37497 0.46092 1.39736 1.41586 1.51016 2.36524 2.74720 2.99588 3.07406 3.54255 3.70813 3.86892 3.96057 4.01011 4.06055 4.09847 4.20599 4.24420 4.31092 4.40415 4.49911 4.53537 4.62990 4.71918 4.75859 4.82220 4.88166 4.90178 4.99462 5.06007 5.12346 5.25094 5.29492 5.46213 5.52169 5.54381 5.63410 5.67846 5.77989 5.93224 6.09957 6.17865 6.25450 6.65674 6.83615 7.32065 7.50948 8.81821 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.003448 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.241336 B = 8118.856540 C = 8594.521356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.117 4.117 5 C -0.127 4.127 6 C -0.119 4.119 7 C 0.160 3.840 8 H 0.095 0.905 9 O -0.555 6.555 10 C 0.028 3.972 11 N -0.520 5.520 12 C 0.056 3.944 13 C -0.140 4.140 14 C 0.235 3.765 15 O -0.591 6.591 16 C -0.563 4.563 17 H 0.057 0.943 18 C 0.028 3.972 19 N -0.914 5.914 20 Si 0.963 3.037 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.065 3.935 25 C -0.129 4.129 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.382 0.618 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.375 0.625 40 H 0.270 0.730 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.945 18.253 6.501 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.135 4.135 5 C -0.144 4.144 6 C -0.120 4.120 7 C 0.100 3.900 8 H 0.113 0.887 9 O -0.362 6.362 10 C -0.101 4.101 11 N -0.244 5.244 12 C -0.072 4.072 13 C -0.179 4.179 14 C 0.194 3.806 15 O -0.400 6.400 16 C -0.601 4.601 17 H 0.075 0.925 18 C -0.172 4.172 19 N -0.554 5.554 20 Si 0.788 3.212 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.194 1.194 24 C -0.062 4.062 25 C -0.147 4.147 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.152 0.848 32 H 0.232 0.768 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.661 18.310 7.229 21.507 hybrid contribution -0.588 -1.167 -1.757 2.190 sum -9.250 17.143 5.472 20.233 Atomic orbital electron populations 1.20839 0.89571 1.03548 1.03072 1.20228 0.97435 0.92889 0.98927 1.21387 0.94582 0.98163 1.00461 1.21429 0.94643 0.98439 0.99015 1.21127 1.00754 0.91935 1.00629 1.20522 0.94649 0.95636 1.01199 1.20736 0.86807 0.93712 0.88737 0.88695 1.86607 1.35078 1.60905 1.53582 1.22983 0.96761 0.93272 0.97050 1.63553 1.39277 1.02657 1.18924 1.22699 0.95680 0.91296 0.97499 1.23113 0.99628 0.97913 0.97279 1.19770 0.81770 0.89119 0.89899 1.86098 1.42774 1.26633 1.84448 1.21866 1.51163 0.92685 0.94395 0.92514 1.25735 0.93397 0.96952 1.01096 1.69675 1.50269 1.03430 1.32050 0.85486 0.78283 0.77673 0.79736 1.20159 1.20493 1.19421 1.22880 0.99487 0.95277 0.88561 1.21080 0.93455 0.98649 1.01565 0.90322 0.90171 0.91456 0.83868 0.83610 0.84757 0.76828 0.89668 0.94501 0.92249 0.92292 0.92976 0.93408 0.77446 0.92004 0.93243 0.91787 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.09 -1.79 5.88 -19.87 -0.12 -1.90 16 3 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 4 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 5 C -0.13 -2.53 9.32 22.27 0.21 -2.32 16 6 C -0.12 -2.80 4.97 -19.87 -0.10 -2.90 16 7 C 0.16 4.35 2.92 29.85 0.09 4.44 16 8 H 0.10 2.76 6.17 -2.39 -0.01 2.74 16 9 O -0.55 -15.84 13.02 -148.98 -1.94 -17.78 16 10 C 0.03 0.85 4.45 86.30 0.38 1.23 16 11 N -0.52 -20.28 5.11 -885.53 -4.52 -24.80 16 12 C 0.06 2.25 6.15 86.65 0.53 2.79 16 13 C -0.14 -6.66 5.63 31.77 0.18 -6.49 16 14 C 0.23 12.06 0.89 -10.16 -0.01 12.05 16 15 O -0.59 -32.69 13.18 -148.98 -1.96 -34.66 16 16 C -0.56 -30.73 8.25 25.60 0.21 -30.52 16 17 H 0.06 3.06 7.77 -2.91 -0.02 3.03 16 18 C 0.03 1.52 5.30 84.66 0.45 1.97 16 19 N -0.91 -49.79 10.77 21.45 0.23 -49.56 16 20 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C 0.07 2.90 5.90 86.77 0.51 3.42 16 25 C -0.13 -2.89 9.32 22.27 0.21 -2.69 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 28 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 29 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 30 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.13 2.19 6.78 -2.91 -0.02 2.17 16 32 H 0.38 8.31 7.50 -74.06 -0.56 7.75 16 33 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.04 1.16 8.01 -2.39 -0.02 1.14 16 35 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.06 2.07 6.05 -2.38 -0.01 2.05 16 37 H 0.05 2.66 7.83 -2.39 -0.02 2.64 16 38 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 39 H 0.38 21.23 6.93 -74.06 -0.51 20.72 16 40 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.05 2.11 7.59 -2.39 -0.02 2.09 16 42 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.12 2.59 8.04 -2.91 -0.02 2.57 16 Total: -1.00 -62.76 345.54 -2.52 -65.29 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: -0.05 Total: 42.58 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 3.70 Total: -25.46 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -4.29 Total: -74.36 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -3.90 Total: -52.44 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -62.76 -2.52 -65.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.259 kcal (2) G-P(sol) polarization free energy of solvation -62.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds