Wall clock time and date at job start Tue Mar 31 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 119.99875 * 2 1 4 4 C 1.38221 * 119.99891 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00080 * 0.02562 * 4 3 2 6 6 C 1.38215 * 119.99981 * 359.95503 * 5 4 3 7 7 C 1.50701 * 119.99864 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 205.00246 * 7 6 5 9 9 O 1.42896 * 109.47417 * 325.00219 * 7 6 5 10 10 C 1.52997 * 109.47212 * 85.00191 * 7 6 5 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 7 6 12 12 C 1.47848 * 111.00001 * 290.84537 * 11 10 7 13 13 C 1.54910 * 104.79561 * 213.63301 * 12 11 10 14 14 C 1.55138 * 101.65178 * 37.06877 * 13 12 11 15 15 O 1.42901 * 110.85701 * 82.80100 * 14 13 12 16 16 C 1.50707 * 110.70828 * 205.96423 * 14 13 12 17 17 H 1.07994 * 120.00025 * 113.59261 * 16 14 13 18 18 C 1.37882 * 119.99713 * 293.60359 * 16 14 13 19 19 N 1.31510 * 120.00064 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99625 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47213 * 90.00125 * 20 18 16 22 22 H 1.48502 * 109.47099 * 209.99463 * 20 18 16 23 23 H 1.48500 * 109.47569 * 329.99555 * 20 18 16 24 24 C 1.47440 * 111.00292 * 170.00127 * 11 10 7 25 25 C 1.38217 * 120.00187 * 180.21391 * 2 1 3 26 26 H 1.09005 * 109.47063 * 90.00164 * 1 2 3 27 27 H 1.09000 * 109.47197 * 209.99654 * 1 2 3 28 28 H 1.08997 * 109.47368 * 330.00035 * 1 2 3 29 29 H 1.07997 * 120.00351 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.99877 * 179.97438 * 4 3 2 31 31 H 1.08004 * 120.00146 * 179.97438 * 5 4 3 32 32 H 0.96708 * 114.00101 * 59.99427 * 9 7 6 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 7 6 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 7 6 35 35 H 1.08997 * 110.37280 * 332.45799 * 12 11 10 36 36 H 1.08999 * 110.36961 * 94.80867 * 12 11 10 37 37 H 1.08999 * 110.99079 * 278.98208 * 13 12 11 38 38 H 1.08994 * 111.02258 * 155.17751 * 13 12 11 39 39 H 0.96696 * 113.99943 * 66.31369 * 15 14 13 40 40 H 0.97002 * 120.00148 * 179.97438 * 19 18 16 41 41 H 1.09009 * 109.88750 * 242.66203 * 24 11 10 42 42 H 1.09000 * 109.89064 * 3.68759 * 24 11 10 43 43 H 1.07997 * 119.99896 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5806 -1.1969 -0.0012 7 6 4.3342 -2.5020 -0.0018 8 1 3.7090 -3.2824 -0.4358 9 8 5.5276 -2.3627 -0.7753 10 6 4.6990 -2.8809 1.4349 11 7 5.4330 -4.1534 1.4345 12 6 4.5473 -5.2758 1.0584 13 6 5.0689 -6.4829 1.8773 14 6 5.4654 -5.8057 3.2155 15 8 4.3254 -5.6455 4.0621 16 6 6.5396 -6.5976 3.9158 17 1 7.5270 -6.1778 4.0380 18 6 6.2615 -7.8583 4.4002 19 7 5.0589 -8.3694 4.2516 20 14 7.5931 -8.8401 5.2675 21 1 7.5582 -8.5441 6.7223 22 1 7.3585 -10.2905 5.0518 23 1 8.9211 -8.4664 4.7179 24 6 6.0066 -4.4330 2.7636 25 6 2.1981 -1.1970 -0.0045 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1327 -0.0010 31 1 5.3517 0.0000 -0.0024 32 1 6.1327 -1.6839 -0.4461 33 1 5.3242 -2.1006 1.8689 34 1 3.7888 -2.9872 2.0250 35 1 3.5153 -5.0517 1.3282 36 1 4.6257 -5.4795 -0.0096 37 1 5.9363 -6.9353 1.3966 38 1 4.2814 -7.2205 2.0312 39 1 3.9468 -6.4789 4.3739 40 1 4.8634 -9.2564 4.5920 41 1 7.0942 -4.4664 2.6986 42 1 5.7010 -3.6606 3.4694 43 1 1.6581 -2.1322 -0.0084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930819156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:26 Heat of formation + Delta-G solvation = -77.506009 kcal Electronic energy + Delta-G solvation = -23453.632945 eV Core-core repulsion = 20077.116072 eV Total energy + Delta-G solvation = -3376.516873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90099 -38.43364 -36.78312 -34.45338 -32.79793 -32.06704 -31.79611 -30.04761 -28.16976 -27.10686 -26.87562 -24.44215 -22.95771 -22.25245 -20.56980 -19.94275 -19.42367 -17.31296 -17.12195 -16.06664 -15.90324 -15.13121 -14.90454 -14.89847 -14.52256 -14.09011 -13.96120 -13.85294 -13.49624 -13.22589 -13.01493 -12.42955 -12.33690 -12.17643 -11.90018 -11.77690 -11.68030 -11.28936 -11.25543 -11.18986 -10.96739 -10.70099 -10.57124 -10.44167 -10.32285 -10.02227 -9.75165 -9.26218 -8.87847 -8.69464 -8.60018 -8.09095 -7.59776 -6.20806 -4.27614 1.21828 1.27681 3.23433 3.30472 3.34274 3.60298 4.30029 4.38398 4.56846 4.69314 4.75940 4.94498 5.05004 5.05593 5.15963 5.19025 5.31624 5.40217 5.43943 5.54586 5.63328 5.73532 5.86332 5.92492 5.99388 6.02404 6.14926 6.17517 6.30423 6.34100 6.43831 6.45209 6.54132 6.57172 6.89057 6.95740 7.08960 7.43306 7.49267 7.65953 7.73860 7.83045 7.86884 8.15231 8.73667 9.40117 9.52624 10.86514 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.003332 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.769890 B = 8401.730339 C = 8738.698561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.104 4.104 7 C 0.153 3.847 8 H 0.104 0.896 9 O -0.540 6.540 10 C 0.028 3.972 11 N -0.519 5.519 12 C 0.040 3.960 13 C -0.130 4.130 14 C 0.236 3.764 15 O -0.593 6.593 16 C -0.531 4.531 17 H 0.062 0.938 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.058 3.942 25 C -0.111 4.111 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.368 0.632 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.383 0.617 40 H 0.267 0.733 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.199 15.393 -8.433 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.133 4.133 5 C -0.135 4.135 6 C -0.105 4.105 7 C 0.094 3.906 8 H 0.122 0.878 9 O -0.345 6.345 10 C -0.101 4.101 11 N -0.243 5.243 12 C -0.087 4.087 13 C -0.169 4.169 14 C 0.196 3.804 15 O -0.403 6.403 16 C -0.569 4.569 17 H 0.081 0.919 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.070 4.070 25 C -0.129 4.129 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.215 0.785 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.054 15.433 -9.214 18.967 hybrid contribution 0.100 -0.787 1.570 1.759 sum -5.954 14.646 -7.644 17.561 Atomic orbital electron populations 1.20797 0.91195 1.02863 1.02280 1.19909 0.96081 0.93109 0.99482 1.21010 0.94299 0.97383 1.01701 1.21080 0.94293 0.97838 1.00043 1.20873 0.99832 0.91980 1.00859 1.20684 0.94447 0.96173 0.99196 1.20809 0.85681 0.92340 0.91810 0.87832 1.86634 1.31241 1.61706 1.54896 1.22899 0.97876 0.94030 0.95316 1.63633 1.31893 1.00908 1.27837 1.23100 0.94127 0.92249 0.99254 1.23152 1.00649 0.95732 0.97358 1.19712 0.84386 0.89545 0.86782 1.86068 1.47753 1.37391 1.69119 1.21623 0.97582 1.00502 1.37231 0.91948 1.25013 0.95865 0.97227 0.95165 1.69588 1.20104 1.17738 1.46610 0.86448 0.81935 0.78917 0.79838 1.20548 1.21110 1.19728 1.22853 0.99321 0.97663 0.87122 1.20905 0.93422 0.97827 1.00720 0.91204 0.91381 0.91604 0.86281 0.86069 0.86126 0.78463 0.91211 0.93871 0.94741 0.91921 0.91753 0.90966 0.76490 0.92303 0.90246 0.93745 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 2 C -0.09 -0.92 5.88 -104.63 -0.62 -1.54 16 3 C -0.13 -1.27 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 5 C -0.12 -1.32 9.33 -39.59 -0.37 -1.69 16 6 C -0.10 -1.32 5.00 -104.62 -0.52 -1.84 16 7 C 0.15 2.18 3.20 -27.88 -0.09 2.09 16 8 H 0.10 1.55 7.40 -51.93 -0.38 1.16 16 9 O -0.54 -7.86 13.00 -35.23 -0.46 -8.31 16 10 C 0.03 0.46 4.21 -3.83 -0.02 0.44 16 11 N -0.52 -10.12 5.03 -231.25 -1.16 -11.29 16 12 C 0.04 0.81 5.78 -2.29 -0.01 0.79 16 13 C -0.13 -3.05 5.67 -24.59 -0.14 -3.19 16 14 C 0.24 5.92 0.85 -89.95 -0.08 5.84 16 15 O -0.59 -15.60 13.09 -35.23 -0.46 -16.06 16 16 C -0.53 -14.34 8.21 -34.44 -0.28 -14.63 16 17 H 0.06 1.67 7.53 -52.49 -0.40 1.28 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 19 N -0.90 -24.15 10.69 55.43 0.59 -23.56 16 20 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.06 1.27 6.21 -2.84 -0.02 1.26 16 25 C -0.11 -1.34 9.34 -39.58 -0.37 -1.71 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 31 H 0.12 1.13 6.61 -52.48 -0.35 0.78 16 32 H 0.37 4.14 7.39 45.56 0.34 4.48 16 33 H 0.07 1.07 8.03 -51.93 -0.42 0.66 16 34 H 0.04 0.76 7.85 -51.93 -0.41 0.35 16 35 H 0.03 0.68 7.62 -51.93 -0.40 0.29 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.56 8.04 -51.93 -0.42 1.14 16 38 H 0.07 1.78 7.76 -51.93 -0.40 1.38 16 39 H 0.38 10.30 6.98 45.56 0.32 10.61 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.08 1.75 7.63 -51.92 -0.40 1.36 16 42 H 0.04 0.97 7.48 -51.93 -0.39 0.58 16 43 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 346.66 15.07 5.22 5.22 Total: -1.00 -29.18 346.66 -9.70 -38.88 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -5.39 Total: 15.56 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -3.03 Total: -16.21 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: -0.57 Total: -34.84 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.92 Total: -24.37 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.18 -9.70 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.626 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds