Wall clock time and date at job start Tue Mar 31 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 119.99875 * 2 1 4 4 C 1.38221 * 119.99891 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00080 * 0.02562 * 4 3 2 6 6 C 1.38215 * 119.99981 * 359.95503 * 5 4 3 7 7 C 1.50701 * 119.99864 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 205.00246 * 7 6 5 9 9 O 1.42896 * 109.47417 * 325.00219 * 7 6 5 10 10 C 1.52997 * 109.47212 * 85.00191 * 7 6 5 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 7 6 12 12 C 1.47848 * 111.00001 * 290.84537 * 11 10 7 13 13 C 1.54910 * 104.79561 * 213.63301 * 12 11 10 14 14 C 1.55138 * 101.65178 * 37.06877 * 13 12 11 15 15 O 1.42901 * 110.85701 * 82.80100 * 14 13 12 16 16 C 1.50707 * 110.70828 * 205.96423 * 14 13 12 17 17 H 1.07994 * 120.00025 * 113.59261 * 16 14 13 18 18 C 1.37882 * 119.99713 * 293.60359 * 16 14 13 19 19 N 1.31510 * 120.00064 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99625 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47213 * 90.00125 * 20 18 16 22 22 H 1.48502 * 109.47099 * 209.99463 * 20 18 16 23 23 H 1.48500 * 109.47569 * 329.99555 * 20 18 16 24 24 C 1.47440 * 111.00292 * 170.00127 * 11 10 7 25 25 C 1.38217 * 120.00187 * 180.21391 * 2 1 3 26 26 H 1.09005 * 109.47063 * 90.00164 * 1 2 3 27 27 H 1.09000 * 109.47197 * 209.99654 * 1 2 3 28 28 H 1.08997 * 109.47368 * 330.00035 * 1 2 3 29 29 H 1.07997 * 120.00351 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.99877 * 179.97438 * 4 3 2 31 31 H 1.08004 * 120.00146 * 179.97438 * 5 4 3 32 32 H 0.96708 * 114.00101 * 59.99427 * 9 7 6 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 7 6 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 7 6 35 35 H 1.08997 * 110.37280 * 332.45799 * 12 11 10 36 36 H 1.08999 * 110.36961 * 94.80867 * 12 11 10 37 37 H 1.08999 * 110.99079 * 278.98208 * 13 12 11 38 38 H 1.08994 * 111.02258 * 155.17751 * 13 12 11 39 39 H 0.96696 * 113.99943 * 66.31369 * 15 14 13 40 40 H 0.97002 * 120.00148 * 179.97438 * 19 18 16 41 41 H 1.09009 * 109.88750 * 242.66203 * 24 11 10 42 42 H 1.09000 * 109.89064 * 3.68759 * 24 11 10 43 43 H 1.07997 * 119.99896 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5806 -1.1969 -0.0012 7 6 4.3342 -2.5020 -0.0018 8 1 3.7090 -3.2824 -0.4358 9 8 5.5276 -2.3627 -0.7753 10 6 4.6990 -2.8809 1.4349 11 7 5.4330 -4.1534 1.4345 12 6 4.5473 -5.2758 1.0584 13 6 5.0689 -6.4829 1.8773 14 6 5.4654 -5.8057 3.2155 15 8 4.3254 -5.6455 4.0621 16 6 6.5396 -6.5976 3.9158 17 1 7.5270 -6.1778 4.0380 18 6 6.2615 -7.8583 4.4002 19 7 5.0589 -8.3694 4.2516 20 14 7.5931 -8.8401 5.2675 21 1 7.5582 -8.5441 6.7223 22 1 7.3585 -10.2905 5.0518 23 1 8.9211 -8.4664 4.7179 24 6 6.0066 -4.4330 2.7636 25 6 2.1981 -1.1970 -0.0045 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1327 -0.0010 31 1 5.3517 0.0000 -0.0024 32 1 6.1327 -1.6839 -0.4461 33 1 5.3242 -2.1006 1.8689 34 1 3.7888 -2.9872 2.0250 35 1 3.5153 -5.0517 1.3282 36 1 4.6257 -5.4795 -0.0096 37 1 5.9363 -6.9353 1.3966 38 1 4.2814 -7.2205 2.0312 39 1 3.9468 -6.4789 4.3739 40 1 4.8634 -9.2564 4.5920 41 1 7.0942 -4.4664 2.6986 42 1 5.7010 -3.6606 3.4694 43 1 1.6581 -2.1322 -0.0084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930819156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:26 Heat of formation + Delta-G solvation = -98.301984 kcal Electronic energy + Delta-G solvation = -23454.534726 eV Core-core repulsion = 20077.116072 eV Total energy + Delta-G solvation = -3377.418655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.90809 -39.97673 -38.02241 -36.22301 -34.13662 -33.60080 -32.83188 -31.55622 -29.97232 -28.42972 -27.74270 -26.22511 -24.29569 -23.10883 -21.90517 -21.32778 -21.17836 -19.15257 -18.30336 -17.16836 -16.99063 -16.86649 -16.49685 -16.35238 -15.79069 -15.53455 -15.33476 -14.84100 -14.69874 -14.39876 -13.98962 -13.93591 -13.79738 -13.48705 -13.21117 -13.10632 -13.02612 -12.95193 -12.69993 -12.51468 -12.34450 -12.30106 -12.12484 -12.05391 -11.88780 -11.77046 -11.23866 -10.91502 -10.63280 -10.11105 -9.73151 -9.51974 -9.22464 -8.23222 -6.38043 0.37872 0.46253 1.40362 1.42172 1.52099 2.38007 2.73973 3.00315 3.05542 3.53560 3.74170 3.88540 3.90354 3.99353 4.03419 4.17400 4.24101 4.28307 4.37726 4.48523 4.49629 4.52298 4.58920 4.70888 4.75146 4.81389 4.81994 4.89022 4.99558 5.10345 5.12505 5.25673 5.29390 5.46808 5.52345 5.54467 5.63491 5.67935 5.79175 5.92972 6.10205 6.16854 6.20053 6.66228 6.84513 7.32532 7.41984 8.82348 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.003332 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.769890 B = 8401.730339 C = 8738.698561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.117 4.117 5 C -0.127 4.127 6 C -0.121 4.121 7 C 0.167 3.833 8 H 0.093 0.907 9 O -0.553 6.553 10 C 0.032 3.968 11 N -0.516 5.516 12 C 0.051 3.949 13 C -0.124 4.124 14 C 0.220 3.780 15 O -0.600 6.600 16 C -0.558 4.558 17 H 0.057 0.943 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 0.962 3.038 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.065 3.935 25 C -0.130 4.130 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.382 0.618 33 H 0.081 0.919 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.377 0.623 40 H 0.270 0.730 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 17.033 -8.912 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.121 4.121 7 C 0.107 3.893 8 H 0.111 0.889 9 O -0.360 6.360 10 C -0.097 4.097 11 N -0.240 5.240 12 C -0.076 4.076 13 C -0.163 4.163 14 C 0.180 3.820 15 O -0.409 6.409 16 C -0.596 4.596 17 H 0.075 0.925 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.788 3.212 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.063 4.063 25 C -0.149 4.149 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.232 0.768 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.951 17.094 -9.703 20.537 hybrid contribution 0.038 -1.240 1.714 2.116 sum -5.913 15.854 -7.988 18.711 Atomic orbital electron populations 1.20838 0.89600 1.03493 1.03098 1.20231 0.97440 0.92907 0.98947 1.21389 0.94618 0.98119 1.00510 1.21437 0.94622 0.98470 0.98994 1.21131 1.00816 0.91873 1.00655 1.20560 0.94655 0.95803 1.01126 1.20539 0.85683 0.93198 0.89863 0.88926 1.86597 1.31681 1.62566 1.55120 1.22961 0.97061 0.92607 0.97069 1.63657 1.32376 1.01925 1.26016 1.22994 0.94043 0.91004 0.99565 1.22965 0.99540 0.96446 0.97305 1.19961 0.83748 0.91280 0.86989 1.86061 1.48257 1.37039 1.69566 1.21899 0.97942 1.01424 1.38383 0.92498 1.25722 0.97877 0.98008 0.95654 1.69671 1.21267 1.17965 1.46700 0.85493 0.79474 0.77580 0.78678 1.20220 1.20566 1.19453 1.22714 0.99247 0.96025 0.88300 1.21064 0.93546 0.98597 1.01646 0.90219 0.91602 0.90154 0.83831 0.83519 0.84582 0.76844 0.90025 0.95204 0.94626 0.90267 0.93027 0.92771 0.77193 0.92087 0.90432 0.93908 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 71.23 0.71 -0.94 16 2 C -0.10 -1.89 5.88 -19.87 -0.12 -2.01 16 3 C -0.13 -2.25 9.70 22.27 0.22 -2.03 16 4 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 5 C -0.13 -2.60 9.33 22.27 0.21 -2.39 16 6 C -0.12 -2.94 5.00 -19.87 -0.10 -3.04 16 7 C 0.17 4.63 3.20 29.85 0.10 4.73 16 8 H 0.09 2.74 7.40 -2.39 -0.02 2.73 16 9 O -0.55 -15.34 13.00 -148.98 -1.94 -17.27 16 10 C 0.03 1.02 4.21 86.30 0.36 1.38 16 11 N -0.52 -19.90 5.03 -885.55 -4.45 -24.36 16 12 C 0.05 2.06 5.78 86.77 0.50 2.56 16 13 C -0.12 -5.90 5.67 31.98 0.18 -5.72 16 14 C 0.22 11.20 0.85 -10.36 -0.01 11.19 16 15 O -0.60 -32.13 13.09 -148.98 -1.95 -34.09 16 16 C -0.56 -30.53 8.21 25.60 0.21 -30.31 16 17 H 0.06 3.09 7.53 -2.91 -0.02 3.06 16 18 C 0.03 1.46 5.28 84.66 0.45 1.91 16 19 N -0.92 -49.62 10.69 21.45 0.23 -49.39 16 20 Si 0.96 42.62 29.54 68.60 2.03 44.65 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 C 0.06 2.87 6.21 86.65 0.54 3.41 16 25 C -0.13 -3.08 9.34 22.27 0.21 -2.87 16 26 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 28 H 0.08 0.92 8.09 -2.39 -0.02 0.91 16 29 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.14 2.23 6.61 -2.91 -0.02 2.22 16 32 H 0.38 7.93 7.39 -74.05 -0.55 7.38 16 33 H 0.08 2.42 8.03 -2.39 -0.02 2.40 16 34 H 0.03 1.05 7.85 -2.39 -0.02 1.03 16 35 H 0.04 1.42 7.62 -2.39 -0.02 1.40 16 36 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.05 2.54 8.04 -2.39 -0.02 2.52 16 38 H 0.05 2.74 7.76 -2.39 -0.02 2.72 16 39 H 0.38 20.79 6.98 -74.06 -0.52 20.28 16 40 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 41 H 0.08 3.43 7.63 -2.38 -0.02 3.41 16 42 H 0.04 1.88 7.48 -2.39 -0.02 1.86 16 43 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -61.73 346.66 -2.46 -64.19 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -0.05 Total: 42.25 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 3.68 Total: -25.98 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -4.22 Total: -73.75 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -3.89 Total: -51.36 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -61.73 -2.46 -64.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.117 kcal (2) G-P(sol) polarization free energy of solvation -61.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds