Wall clock time and date at job start Tue Mar 31 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00224 * 2 1 4 4 C 1.38209 * 119.99888 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00215 * 359.70951 * 4 3 2 6 6 C 1.38217 * 119.99785 * 0.54693 * 5 4 3 7 7 C 1.50700 * 119.99811 * 179.74469 * 6 5 4 8 8 H 1.08998 * 109.46905 * 159.72539 * 7 6 5 9 9 O 1.42899 * 109.47185 * 39.73084 * 7 6 5 10 10 C 1.53003 * 109.47349 * 279.72598 * 7 6 5 11 11 N 1.46892 * 109.47113 * 180.32879 * 10 7 6 12 12 C 1.47904 * 111.00030 * 175.82811 * 11 10 7 13 13 C 1.53991 * 107.05765 * 214.15530 * 12 11 10 14 14 C 1.54588 * 105.14133 * 1.22463 * 13 12 11 15 15 O 1.42901 * 110.72618 * 263.41927 * 14 13 12 16 16 C 1.50698 * 110.72485 * 140.31548 * 14 13 12 17 17 H 1.07999 * 120.00110 * 242.37442 * 16 14 13 18 18 C 1.37881 * 120.00099 * 62.37485 * 16 14 13 19 19 N 1.31513 * 119.99921 * 354.83086 * 18 16 14 20 20 Si 1.86802 * 120.00348 * 174.82405 * 18 16 14 21 21 H 1.48502 * 109.46919 * 94.99536 * 20 18 16 22 22 H 1.48498 * 109.47306 * 214.99968 * 20 18 16 23 23 H 1.48503 * 109.46975 * 335.00243 * 20 18 16 24 24 C 1.48537 * 111.00411 * 58.43038 * 11 10 7 25 25 C 1.38217 * 119.99796 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46445 * 270.02061 * 1 2 3 27 27 H 1.08999 * 109.46940 * 30.01345 * 1 2 3 28 28 H 1.08999 * 109.47324 * 150.02018 * 1 2 3 29 29 H 1.07995 * 119.99658 * 359.97438 * 3 2 1 30 30 H 1.08007 * 119.99713 * 179.97438 * 4 3 2 31 31 H 1.07996 * 119.99976 * 180.29151 * 5 4 3 32 32 H 0.96707 * 113.99494 * 299.99824 * 9 7 6 33 33 H 1.08998 * 109.46822 * 300.32942 * 10 7 6 34 34 H 1.09002 * 109.46506 * 60.32587 * 10 7 6 35 35 H 1.08997 * 109.91656 * 333.51149 * 12 11 10 36 36 H 1.09004 * 109.91389 * 94.80142 * 12 11 10 37 37 H 1.09000 * 110.31097 * 120.14252 * 13 12 11 38 38 H 1.09003 * 110.30745 * 242.30680 * 13 12 11 39 39 H 0.96701 * 114.00256 * 298.55401 * 15 14 13 40 40 H 0.97001 * 120.00192 * 180.02562 * 19 18 16 41 41 H 1.08997 * 110.66770 * 278.16176 * 24 11 10 42 42 H 1.09001 * 110.66064 * 41.28701 * 24 11 10 43 43 H 1.07997 * 119.99675 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0050 6 6 3.5806 -1.1970 -0.0004 7 6 4.3341 -2.5021 -0.0001 8 1 3.6795 -3.2995 0.3516 9 8 5.4661 -2.3985 0.8658 10 6 4.8059 -2.8190 -1.4207 11 7 5.5336 -4.0950 -1.4218 12 6 5.9194 -4.4839 -2.7957 13 6 5.8475 -6.0205 -2.8672 14 6 5.3696 -6.4679 -1.4667 15 8 6.4805 -6.8386 -0.6478 16 6 4.3877 -7.6058 -1.5767 17 1 3.3747 -7.4808 -1.2238 18 6 4.7825 -8.8063 -2.1279 19 7 5.9836 -8.9269 -2.6498 20 14 3.6116 -10.2618 -2.1331 21 1 2.8880 -10.3103 -3.4291 22 1 4.3822 -11.5178 -1.9491 23 1 2.6335 -10.1142 -1.0255 24 6 4.6765 -5.1970 -0.9146 25 6 2.1981 -1.1970 0.0005 26 1 -0.3632 0.0004 1.0278 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6584 2.1326 -0.0004 30 1 4.1205 2.1326 -0.0010 31 1 5.3517 -0.0001 0.0093 32 1 6.0930 -1.7070 0.6125 33 1 3.9428 -2.8923 -2.0823 34 1 5.4651 -2.0243 -1.7702 35 1 5.2265 -4.0459 -3.5140 36 1 6.9357 -4.1496 -3.0046 37 1 5.1315 -6.3307 -3.6282 38 1 6.8323 -6.4357 -3.0814 39 1 6.9927 -7.5826 -0.9930 40 1 6.2613 -9.7714 -3.0380 41 1 4.6670 -5.2066 0.1753 42 1 3.6640 -5.1092 -1.3085 43 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930819157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:30 Heat of formation + Delta-G solvation = -75.056958 kcal Electronic energy + Delta-G solvation = -23509.638069 eV Core-core repulsion = 20133.227395 eV Total energy + Delta-G solvation = -3376.410675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91391 -38.40758 -36.73210 -34.45567 -32.81570 -32.08647 -31.79540 -30.07994 -28.03913 -27.11703 -26.70958 -24.82521 -22.80529 -22.22549 -20.46747 -20.10629 -19.32518 -17.35600 -16.91052 -15.97430 -15.90478 -15.42961 -14.85853 -14.72591 -14.54860 -14.09241 -13.89690 -13.78030 -13.68191 -13.22206 -12.84379 -12.52720 -12.37936 -12.20699 -12.06018 -11.77575 -11.59476 -11.32084 -11.23268 -11.15641 -11.00305 -10.74364 -10.53414 -10.46190 -10.29014 -9.86882 -9.67580 -9.07706 -8.89810 -8.70896 -8.58598 -8.04064 -7.66104 -6.17526 -4.25573 1.20410 1.26514 3.22968 3.31166 3.35642 3.59211 4.30208 4.38526 4.58768 4.68674 4.75791 4.93687 5.04315 5.09622 5.13655 5.16390 5.30909 5.38626 5.41484 5.54133 5.62474 5.75509 5.84138 5.85553 5.91144 5.99015 6.03177 6.11519 6.21019 6.32614 6.43907 6.48893 6.54585 6.66797 6.87746 6.94822 7.09932 7.42595 7.56027 7.59531 7.69650 7.85038 7.88617 8.22938 8.76576 9.43353 9.58064 10.88936 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.003674 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.267366 B = 7619.127434 C = 8328.689687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.104 4.104 7 C 0.150 3.850 8 H 0.107 0.893 9 O -0.536 6.536 10 C 0.022 3.978 11 N -0.503 5.503 12 C 0.034 3.966 13 C -0.127 4.127 14 C 0.257 3.743 15 O -0.577 6.577 16 C -0.538 4.538 17 H 0.060 0.940 18 C 0.071 3.929 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.281 1.281 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.052 3.948 25 C -0.110 4.110 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.367 0.633 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.374 0.626 40 H 0.266 0.734 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.976 18.018 2.020 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.133 4.133 5 C -0.135 4.135 6 C -0.105 4.105 7 C 0.091 3.909 8 H 0.125 0.875 9 O -0.340 6.340 10 C -0.107 4.107 11 N -0.226 5.226 12 C -0.093 4.093 13 C -0.166 4.166 14 C 0.216 3.784 15 O -0.384 6.384 16 C -0.577 4.577 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.075 4.075 25 C -0.128 4.128 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.214 0.786 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.223 0.777 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.921 17.975 2.927 19.150 hybrid contribution -0.898 -0.830 -1.441 1.890 sum -6.819 17.145 1.486 18.511 Atomic orbital electron populations 1.20800 0.91185 1.02801 1.02355 1.19917 0.96086 0.93104 0.99498 1.21008 0.94297 0.97379 1.01697 1.21077 0.94290 0.97827 1.00099 1.20884 0.99828 0.91987 1.00837 1.20692 0.94449 0.96142 0.99188 1.20859 0.87094 0.92798 0.90198 0.87496 1.86692 1.34315 1.59819 1.53198 1.22924 0.97201 0.94790 0.95827 1.64788 1.37405 1.00941 1.19499 1.22951 0.99191 0.98618 0.88569 1.22925 1.01992 0.90453 1.01236 1.19305 0.84439 0.89624 0.84999 1.86175 1.44647 1.54881 1.52707 1.21616 0.97758 0.97625 1.40660 0.92210 1.24996 0.95478 0.98780 0.93869 1.69797 1.18681 1.26071 1.38643 0.86502 0.80844 0.81870 0.78311 1.20744 1.20971 1.19725 1.23198 0.93566 0.90579 1.00161 1.20940 0.93435 0.97871 1.00591 0.91151 0.91636 0.91386 0.86288 0.86078 0.86136 0.78559 0.94445 0.91145 0.95523 0.91902 0.92098 0.91454 0.77720 0.92462 0.90630 0.94053 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.09 -0.91 5.88 -104.62 -0.62 -1.53 16 3 C -0.13 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.11 -1.14 10.05 -39.59 -0.40 -1.54 16 5 C -0.12 -1.30 9.32 -39.58 -0.37 -1.67 16 6 C -0.10 -1.32 4.97 -104.62 -0.52 -1.84 16 7 C 0.15 2.22 2.98 -27.88 -0.08 2.13 16 8 H 0.11 1.72 6.74 -51.93 -0.35 1.37 16 9 O -0.54 -8.38 13.06 -35.23 -0.46 -8.84 16 10 C 0.02 0.34 4.48 -3.83 -0.02 0.33 16 11 N -0.50 -9.93 5.22 -230.46 -1.20 -11.14 16 12 C 0.03 0.69 6.70 -2.75 -0.02 0.67 16 13 C -0.13 -3.00 5.20 -25.38 -0.13 -3.13 16 14 C 0.26 6.51 0.95 -89.92 -0.09 6.42 16 15 O -0.58 -15.57 13.09 -35.23 -0.46 -16.03 16 16 C -0.54 -14.58 8.13 -34.44 -0.28 -14.86 16 17 H 0.06 1.61 7.79 -52.49 -0.41 1.20 16 18 C 0.07 1.90 5.27 -17.82 -0.09 1.81 16 19 N -0.89 -24.07 11.02 55.43 0.61 -23.46 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.05 1.16 4.48 -1.90 -0.01 1.15 16 25 C -0.11 -1.33 9.33 -39.58 -0.37 -1.70 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.12 1.12 6.78 -52.49 -0.36 0.76 16 32 H 0.37 4.39 7.50 45.56 0.34 4.74 16 33 H 0.04 0.59 7.97 -51.93 -0.41 0.18 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.03 0.49 7.67 -51.93 -0.40 0.09 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.49 7.84 -51.93 -0.41 1.09 16 38 H 0.07 1.66 7.95 -51.93 -0.41 1.25 16 39 H 0.37 10.09 7.58 45.56 0.35 10.44 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.08 1.74 7.65 -51.93 -0.40 1.35 16 42 H 0.04 0.88 7.92 -51.93 -0.41 0.47 16 43 H 0.12 1.40 8.04 -52.49 -0.42 0.98 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -29.86 347.15 -9.70 -39.56 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -5.38 Total: 14.89 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -3.01 Total: -15.97 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.59 Total: -34.59 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.92 Total: -24.86 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.86 -9.70 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.502 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds