Wall clock time and date at job start Tue Mar 31 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00224 * 2 1 4 4 C 1.38209 * 119.99888 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00215 * 359.70951 * 4 3 2 6 6 C 1.38217 * 119.99785 * 0.54693 * 5 4 3 7 7 C 1.50700 * 119.99811 * 179.74469 * 6 5 4 8 8 H 1.08998 * 109.46905 * 159.72539 * 7 6 5 9 9 O 1.42899 * 109.47185 * 39.73084 * 7 6 5 10 10 C 1.53003 * 109.47349 * 279.72598 * 7 6 5 11 11 N 1.46892 * 109.47113 * 180.32879 * 10 7 6 12 12 C 1.47904 * 111.00030 * 175.82811 * 11 10 7 13 13 C 1.53991 * 107.05765 * 214.15530 * 12 11 10 14 14 C 1.54588 * 105.14133 * 1.22463 * 13 12 11 15 15 O 1.42901 * 110.72618 * 263.41927 * 14 13 12 16 16 C 1.50698 * 110.72485 * 140.31548 * 14 13 12 17 17 H 1.07999 * 120.00110 * 242.37442 * 16 14 13 18 18 C 1.37881 * 120.00099 * 62.37485 * 16 14 13 19 19 N 1.31513 * 119.99921 * 354.83086 * 18 16 14 20 20 Si 1.86802 * 120.00348 * 174.82405 * 18 16 14 21 21 H 1.48502 * 109.46919 * 94.99536 * 20 18 16 22 22 H 1.48498 * 109.47306 * 214.99968 * 20 18 16 23 23 H 1.48503 * 109.46975 * 335.00243 * 20 18 16 24 24 C 1.48537 * 111.00411 * 58.43038 * 11 10 7 25 25 C 1.38217 * 119.99796 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46445 * 270.02061 * 1 2 3 27 27 H 1.08999 * 109.46940 * 30.01345 * 1 2 3 28 28 H 1.08999 * 109.47324 * 150.02018 * 1 2 3 29 29 H 1.07995 * 119.99658 * 359.97438 * 3 2 1 30 30 H 1.08007 * 119.99713 * 179.97438 * 4 3 2 31 31 H 1.07996 * 119.99976 * 180.29151 * 5 4 3 32 32 H 0.96707 * 113.99494 * 299.99824 * 9 7 6 33 33 H 1.08998 * 109.46822 * 300.32942 * 10 7 6 34 34 H 1.09002 * 109.46506 * 60.32587 * 10 7 6 35 35 H 1.08997 * 109.91656 * 333.51149 * 12 11 10 36 36 H 1.09004 * 109.91389 * 94.80142 * 12 11 10 37 37 H 1.09000 * 110.31097 * 120.14252 * 13 12 11 38 38 H 1.09003 * 110.30745 * 242.30680 * 13 12 11 39 39 H 0.96701 * 114.00256 * 298.55401 * 15 14 13 40 40 H 0.97001 * 120.00192 * 180.02562 * 19 18 16 41 41 H 1.08997 * 110.66770 * 278.16176 * 24 11 10 42 42 H 1.09001 * 110.66064 * 41.28701 * 24 11 10 43 43 H 1.07997 * 119.99675 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0050 6 6 3.5806 -1.1970 -0.0004 7 6 4.3341 -2.5021 -0.0001 8 1 3.6795 -3.2995 0.3516 9 8 5.4661 -2.3985 0.8658 10 6 4.8059 -2.8190 -1.4207 11 7 5.5336 -4.0950 -1.4218 12 6 5.9194 -4.4839 -2.7957 13 6 5.8475 -6.0205 -2.8672 14 6 5.3696 -6.4679 -1.4667 15 8 6.4805 -6.8386 -0.6478 16 6 4.3877 -7.6058 -1.5767 17 1 3.3747 -7.4808 -1.2238 18 6 4.7825 -8.8063 -2.1279 19 7 5.9836 -8.9269 -2.6498 20 14 3.6116 -10.2618 -2.1331 21 1 2.8880 -10.3103 -3.4291 22 1 4.3822 -11.5178 -1.9491 23 1 2.6335 -10.1142 -1.0255 24 6 4.6765 -5.1970 -0.9146 25 6 2.1981 -1.1970 0.0005 26 1 -0.3632 0.0004 1.0278 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6584 2.1326 -0.0004 30 1 4.1205 2.1326 -0.0010 31 1 5.3517 -0.0001 0.0093 32 1 6.0930 -1.7070 0.6125 33 1 3.9428 -2.8923 -2.0823 34 1 5.4651 -2.0243 -1.7702 35 1 5.2265 -4.0459 -3.5140 36 1 6.9357 -4.1496 -3.0046 37 1 5.1315 -6.3307 -3.6282 38 1 6.8323 -6.4357 -3.0814 39 1 6.9927 -7.5826 -0.9930 40 1 6.2613 -9.7714 -3.0380 41 1 4.6670 -5.2066 0.1753 42 1 3.6640 -5.1092 -1.3085 43 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930819157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:29 Heat of formation + Delta-G solvation = -96.965426 kcal Electronic energy + Delta-G solvation = -23510.588092 eV Core-core repulsion = 20133.227395 eV Total energy + Delta-G solvation = -3377.360697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91888 -39.92521 -38.02000 -36.24473 -34.17765 -33.62555 -32.83824 -31.55266 -29.87259 -28.25202 -27.70896 -26.62818 -24.10260 -23.10165 -21.77749 -21.62635 -20.98559 -19.04415 -18.22875 -17.14470 -17.03918 -16.91648 -16.74227 -15.93860 -15.77860 -15.66678 -15.30524 -14.88684 -14.60243 -14.40182 -14.21756 -13.98087 -13.79165 -13.35660 -13.28910 -13.13951 -13.01007 -12.89241 -12.65736 -12.52787 -12.43550 -12.30175 -12.20561 -12.02433 -11.73120 -11.70460 -11.03408 -10.91475 -10.63536 -10.08232 -9.74207 -9.52134 -9.24466 -8.21475 -6.37372 0.37378 0.45847 1.38439 1.41761 1.51815 2.37737 2.74846 3.01733 3.08446 3.53976 3.71242 3.88486 3.94045 4.00574 4.04203 4.08819 4.22390 4.24259 4.36008 4.42128 4.49288 4.52857 4.61992 4.73137 4.74335 4.81583 4.87595 4.88412 4.98355 5.10797 5.11912 5.22574 5.29289 5.47629 5.54186 5.58102 5.63537 5.67917 5.75517 5.89413 6.09816 6.16123 6.27928 6.68034 6.85691 7.34470 7.46390 8.83591 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.003674 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.267366 B = 7619.127434 C = 8328.689687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.118 4.118 7 C 0.159 3.841 8 H 0.084 0.916 9 O -0.556 6.556 10 C 0.025 3.975 11 N -0.510 5.510 12 C 0.041 3.959 13 C -0.118 4.118 14 C 0.238 3.762 15 O -0.588 6.588 16 C -0.565 4.565 17 H 0.053 0.947 18 C 0.031 3.969 19 N -0.909 5.909 20 Si 0.958 3.042 21 H -0.274 1.274 22 H -0.279 1.279 23 H -0.273 1.273 24 C 0.065 3.935 25 C -0.131 4.131 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.137 0.863 32 H 0.382 0.618 33 H 0.040 0.960 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.369 0.631 40 H 0.268 0.732 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 20.079 1.691 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.143 4.143 6 C -0.119 4.119 7 C 0.099 3.901 8 H 0.102 0.898 9 O -0.363 6.363 10 C -0.103 4.103 11 N -0.234 5.234 12 C -0.086 4.086 13 C -0.157 4.157 14 C 0.198 3.802 15 O -0.395 6.395 16 C -0.604 4.604 17 H 0.071 0.929 18 C -0.170 4.170 19 N -0.548 5.548 20 Si 0.784 3.216 21 H -0.200 1.200 22 H -0.205 1.205 23 H -0.198 1.198 24 C -0.062 4.062 25 C -0.149 4.149 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.232 0.768 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.217 0.783 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.664 20.059 2.592 21.296 hybrid contribution -0.660 -1.414 -1.318 2.042 sum -7.324 18.646 1.274 20.073 Atomic orbital electron populations 1.20842 0.89617 1.03555 1.03039 1.20223 0.97411 0.92856 0.98940 1.21391 0.94626 0.98078 1.00414 1.21437 0.94590 0.98441 0.98909 1.21123 1.00791 0.91784 1.00599 1.20503 0.94586 0.95591 1.01236 1.20630 0.86764 0.93572 0.89123 0.89786 1.86648 1.35058 1.60836 1.53748 1.23000 0.97370 0.93115 0.96814 1.64739 1.37697 1.01656 1.19288 1.22878 1.00664 0.95835 0.89237 1.22704 1.00166 0.93236 0.99610 1.19585 0.83987 0.90526 0.86084 1.86167 1.45166 1.54665 1.53461 1.21875 0.97959 0.99055 1.41473 0.92919 1.25689 0.97020 1.00959 0.93345 1.69881 1.19725 1.26647 1.38521 0.85549 0.78941 0.78764 0.78371 1.19964 1.20465 1.19787 1.22948 0.93768 0.90371 0.99162 1.21071 0.93558 0.98585 1.01706 0.90432 0.89984 0.91566 0.83747 0.83408 0.84570 0.76821 0.94230 0.88893 0.93568 0.90456 0.93776 0.93276 0.78290 0.92232 0.92137 0.93756 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.92 16 2 C -0.09 -1.84 5.88 -19.86 -0.12 -1.96 16 3 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 4 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 5 C -0.13 -2.51 9.32 22.27 0.21 -2.30 16 6 C -0.12 -2.90 4.97 -19.87 -0.10 -3.00 16 7 C 0.16 4.65 2.98 29.85 0.09 4.73 16 8 H 0.08 2.80 6.74 -2.39 -0.02 2.79 16 9 O -0.56 -17.11 13.06 -148.98 -1.95 -19.05 16 10 C 0.03 0.77 4.48 86.31 0.39 1.16 16 11 N -0.51 -19.86 5.22 -883.03 -4.61 -24.48 16 12 C 0.04 1.61 6.70 86.44 0.58 2.19 16 13 C -0.12 -5.65 5.20 31.47 0.16 -5.48 16 14 C 0.24 12.34 0.95 -10.34 -0.01 12.33 16 15 O -0.59 -32.55 13.09 -148.98 -1.95 -34.50 16 16 C -0.57 -31.28 8.13 25.60 0.21 -31.07 16 17 H 0.05 2.90 7.79 -2.91 -0.02 2.88 16 18 C 0.03 1.66 5.27 84.66 0.45 2.10 16 19 N -0.91 -49.59 11.02 21.45 0.24 -49.36 16 20 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.07 2.95 4.48 86.65 0.39 3.34 16 25 C -0.13 -3.11 9.33 22.27 0.21 -2.90 16 26 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 28 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 29 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 31 H 0.14 2.18 6.78 -2.91 -0.02 2.16 16 32 H 0.38 8.64 7.50 -74.05 -0.56 8.09 16 33 H 0.04 1.20 7.97 -2.39 -0.02 1.19 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.05 1.61 7.67 -2.39 -0.02 1.60 16 36 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 37 H 0.04 2.20 7.84 -2.39 -0.02 2.18 16 38 H 0.05 2.47 7.95 -2.39 -0.02 2.45 16 39 H 0.37 20.58 7.58 -74.06 -0.56 20.02 16 40 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.06 2.88 7.65 -2.39 -0.02 2.86 16 42 H 0.04 1.94 7.92 -2.39 -0.02 1.92 16 43 H 0.12 2.78 8.04 -2.91 -0.02 2.76 16 Total: -1.00 -64.09 347.15 -2.75 -66.83 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.10 Total: 41.17 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 3.60 Total: -25.47 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -4.38 Total: -73.83 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -3.90 Total: -53.55 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -64.09 -2.75 -66.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.133 kcal (2) G-P(sol) polarization free energy of solvation -64.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds