Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35903 * 117.00035 * 2 1 4 4 C 1.38760 * 120.05188 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94102 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05411 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.94122 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47205 * 265.00525 * 7 6 5 9 9 O 1.21279 * 119.99863 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99833 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00125 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00163 * 179.97438 * 10 8 7 13 13 H 1.08998 * 109.46845 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47473 * 240.00131 * 12 10 8 15 15 C 1.50706 * 109.47187 * 119.99734 * 12 10 8 16 16 H 1.07998 * 119.99629 * 0.02562 * 15 12 10 17 17 C 1.37875 * 119.99955 * 179.97438 * 15 12 10 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.46754 * 90.00468 * 19 17 15 21 21 H 1.48498 * 109.47278 * 210.00299 * 19 17 15 22 22 H 1.48498 * 109.47109 * 330.00728 * 19 17 15 23 23 C 1.38238 * 120.11731 * 0.26194 * 6 5 4 24 24 C 1.50694 * 119.97655 * 179.69951 * 23 6 5 25 25 C 1.38172 * 120.05081 * 359.44317 * 23 6 5 26 26 H 1.09002 * 109.47432 * 300.00223 * 1 2 3 27 27 H 1.09001 * 109.47051 * 60.00882 * 1 2 3 28 28 H 1.09001 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.02727 * 0.04251 * 4 3 2 30 30 H 1.07997 * 119.97106 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.46660 * 145.00808 * 7 6 5 32 32 H 1.08993 * 109.46759 * 25.00511 * 7 6 5 33 33 H 1.08993 * 109.47565 * 270.00429 * 11 10 8 34 34 H 1.09007 * 109.46761 * 30.00462 * 11 10 8 35 35 H 1.09002 * 109.46792 * 150.00115 * 11 10 8 36 36 H 1.09002 * 109.47153 * 59.99757 * 14 12 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 14 12 10 38 38 H 1.09004 * 109.47261 * 179.97438 * 14 12 10 39 39 H 0.96998 * 120.00365 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47189 * 90.00022 * 24 23 6 41 41 H 1.09002 * 109.47193 * 209.99319 * 24 23 6 42 42 H 1.08993 * 109.47217 * 329.99531 * 24 23 6 43 43 H 1.08005 * 120.03075 * 180.24969 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9860 5.0187 -0.0028 8 6 4.3238 5.4091 -1.4186 9 8 4.0376 4.6696 -2.3362 10 7 4.9447 6.5796 -1.6648 11 6 5.2909 7.4726 -0.5562 12 6 5.2736 6.9590 -3.0411 13 1 4.9412 6.1764 -3.7230 14 6 6.7871 7.1413 -3.1721 15 6 4.5802 8.2521 -3.3851 16 1 3.9572 8.7424 -2.6517 17 6 4.7420 8.8096 -4.6357 18 7 5.5011 8.2128 -5.5285 19 14 3.8831 10.4128 -5.0618 20 1 4.7650 11.5551 -4.7113 21 1 3.5869 10.4442 -6.5166 22 1 2.6148 10.5135 -4.2961 23 6 4.0559 2.5173 -0.0071 24 6 5.5607 2.5983 -0.0145 25 6 3.4311 1.2849 -0.0004 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.2128 2.3203 -0.0003 30 1 1.3339 4.5114 -0.0011 31 1 4.9013 4.9605 0.5863 32 1 3.3212 5.7654 0.4313 33 1 4.4648 8.1590 -0.3710 34 1 5.4808 6.8822 0.3402 35 1 6.1849 8.0409 -0.8131 36 1 7.2886 6.2060 -2.9233 37 1 7.1191 7.9242 -2.4902 38 1 7.0318 7.4232 -4.1963 39 1 5.6146 8.6049 -6.4085 40 1 5.9287 2.6164 1.0114 41 1 5.9688 1.7299 -0.5315 42 1 5.8730 3.5072 -0.5286 43 1 4.0206 0.3799 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931941562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = -52.099476 kcal Electronic energy + Delta-G solvation = -23419.030743 eV Core-core repulsion = 20043.615579 eV Total energy + Delta-G solvation = -3375.415163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28016 -39.09194 -37.56609 -35.23300 -32.95806 -32.49389 -31.91113 -29.58496 -28.34880 -26.55576 -26.29442 -25.90805 -25.17035 -22.31567 -21.36946 -20.30096 -18.20746 -17.69494 -16.60430 -16.47783 -16.21528 -15.76386 -15.39554 -14.94570 -14.76978 -14.21240 -14.01693 -13.67549 -13.43803 -13.18311 -12.78575 -12.56566 -12.46739 -12.17209 -12.14144 -11.92490 -11.65566 -11.58433 -11.47002 -11.14651 -11.02212 -10.82259 -10.78525 -10.69182 -10.63074 -10.23996 -10.14910 -9.15382 -8.90873 -8.64339 -8.41221 -7.91546 -7.53922 -6.05488 -4.13414 1.46441 1.55141 3.24723 3.26720 3.33780 3.36272 3.46220 3.75106 4.15266 4.42261 4.80971 4.88060 4.98668 5.01673 5.03965 5.24687 5.29779 5.32075 5.35512 5.39374 5.44491 5.63817 5.71543 5.76689 5.77551 5.90906 6.04309 6.09317 6.24361 6.31418 6.40322 6.50035 6.77826 6.80369 6.84084 6.88155 7.08288 7.43271 7.47847 7.55954 7.74065 8.04426 8.22538 8.57915 8.86432 9.12576 9.53300 10.99736 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022831 B = 0.003659 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.083902 B = 7651.337197 C = 8136.067287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.122 3.878 4 C -0.212 4.212 5 C -0.064 4.064 6 C -0.091 4.091 7 C -0.101 4.101 8 C 0.504 3.496 9 O -0.543 6.543 10 N -0.596 5.596 11 C 0.086 3.914 12 C 0.258 3.742 13 H 0.063 0.937 14 C -0.147 4.147 15 C -0.524 4.524 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.030 4.030 24 C -0.117 4.117 25 C -0.152 4.152 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.011 0.989 37 H 0.030 0.970 38 H 0.093 0.907 39 H 0.263 0.737 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 -10.237 14.853 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.077 3.923 4 C -0.231 4.231 5 C -0.083 4.083 6 C -0.091 4.091 7 C -0.141 4.141 8 C 0.290 3.710 9 O -0.421 6.421 10 N -0.328 5.328 11 C -0.058 4.058 12 C 0.158 3.842 13 H 0.081 0.919 14 C -0.205 4.205 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.030 4.030 24 C -0.173 4.173 25 C -0.171 4.171 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.030 0.970 37 H 0.049 0.951 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.465 -10.776 14.147 18.335 hybrid contribution -0.798 1.238 -0.306 1.504 sum -5.262 -9.538 13.841 17.613 Atomic orbital electron populations 1.23008 0.78742 1.03550 1.01356 1.86034 1.21122 1.27255 1.89076 1.18931 0.92252 0.83907 0.97208 1.21091 0.99646 0.92295 1.10039 1.20757 0.93808 0.97035 0.96661 1.19152 0.93212 0.93683 1.03078 1.20719 1.01672 0.95026 0.96669 1.20267 0.78663 0.81852 0.90186 1.90674 1.53646 1.51587 1.46194 1.48248 1.57073 1.17799 1.09685 1.21560 1.01254 0.94253 0.88736 1.18911 0.92114 0.96564 0.76622 0.91946 1.22095 0.97528 0.96983 1.03931 1.21333 1.29314 1.06989 0.98690 0.92347 1.24895 0.95247 0.97616 0.96077 1.69876 1.38152 1.39130 1.05486 0.86505 0.79875 0.83405 0.77656 1.20634 1.21120 1.19970 1.19455 0.95936 0.91561 0.96018 1.20838 0.90938 1.03605 1.01940 1.20164 0.91199 0.97857 1.07887 0.92834 0.92651 0.88541 0.85790 0.85913 0.88638 0.88805 0.93378 0.92957 0.90907 0.97008 0.95136 0.88854 0.92718 0.91061 0.91306 0.90937 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.14 10.50 -19.44 -0.20 -4.34 16 3 C 0.12 1.74 6.69 -39.22 -0.26 1.47 16 4 C -0.21 -2.89 9.04 -39.43 -0.36 -3.25 16 5 C -0.06 -0.95 9.67 -39.61 -0.38 -1.33 16 6 C -0.09 -1.41 4.37 -104.60 -0.46 -1.86 16 7 C -0.10 -1.51 3.70 -29.03 -0.11 -1.62 16 8 C 0.50 10.35 6.86 -10.99 -0.08 10.28 16 9 O -0.54 -13.56 15.36 5.56 0.09 -13.47 16 10 N -0.60 -12.61 2.75 -175.26 -0.48 -13.09 16 11 C 0.09 1.41 9.48 59.85 0.57 1.97 16 12 C 0.26 6.62 2.64 -69.08 -0.18 6.44 16 13 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 14 C -0.15 -3.52 8.95 37.16 0.33 -3.18 16 15 C -0.52 -14.27 8.37 -34.44 -0.29 -14.56 16 16 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 19 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.03 -0.44 5.88 -104.65 -0.62 -1.05 16 24 C -0.12 -1.50 9.21 36.00 0.33 -1.17 16 25 C -0.15 -2.20 9.64 -39.43 -0.38 -2.58 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.12 1.37 6.30 -52.49 -0.33 1.04 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.10 1.19 6.26 -51.93 -0.33 0.87 16 32 H 0.09 1.22 8.02 -51.93 -0.42 0.81 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.65 6.44 -51.92 -0.33 0.32 16 35 H 0.07 1.21 6.43 -51.93 -0.33 0.87 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 42 H 0.07 1.06 6.14 -51.93 -0.32 0.74 16 43 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -33.01 347.66 -7.10 -40.11 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.37 Total: 1.67 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.98 Total: -7.55 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.14 Total: -37.79 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.12 Total: -17.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.01 -7.10 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.988 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds