Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35903 * 117.00035 * 2 1 4 4 C 1.38760 * 120.05188 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94102 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05411 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.94122 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47205 * 265.00525 * 7 6 5 9 9 O 1.21279 * 119.99863 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99833 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00125 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00163 * 179.97438 * 10 8 7 13 13 H 1.08998 * 109.46845 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47473 * 240.00131 * 12 10 8 15 15 C 1.50706 * 109.47187 * 119.99734 * 12 10 8 16 16 H 1.07998 * 119.99629 * 0.02562 * 15 12 10 17 17 C 1.37875 * 119.99955 * 179.97438 * 15 12 10 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.46754 * 90.00468 * 19 17 15 21 21 H 1.48498 * 109.47278 * 210.00299 * 19 17 15 22 22 H 1.48498 * 109.47109 * 330.00728 * 19 17 15 23 23 C 1.38238 * 120.11731 * 0.26194 * 6 5 4 24 24 C 1.50694 * 119.97655 * 179.69951 * 23 6 5 25 25 C 1.38172 * 120.05081 * 359.44317 * 23 6 5 26 26 H 1.09002 * 109.47432 * 300.00223 * 1 2 3 27 27 H 1.09001 * 109.47051 * 60.00882 * 1 2 3 28 28 H 1.09001 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.02727 * 0.04251 * 4 3 2 30 30 H 1.07997 * 119.97106 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.46660 * 145.00808 * 7 6 5 32 32 H 1.08993 * 109.46759 * 25.00511 * 7 6 5 33 33 H 1.08993 * 109.47565 * 270.00429 * 11 10 8 34 34 H 1.09007 * 109.46761 * 30.00462 * 11 10 8 35 35 H 1.09002 * 109.46792 * 150.00115 * 11 10 8 36 36 H 1.09002 * 109.47153 * 59.99757 * 14 12 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 14 12 10 38 38 H 1.09004 * 109.47261 * 179.97438 * 14 12 10 39 39 H 0.96998 * 120.00365 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47189 * 90.00022 * 24 23 6 41 41 H 1.09002 * 109.47193 * 209.99319 * 24 23 6 42 42 H 1.08993 * 109.47217 * 329.99531 * 24 23 6 43 43 H 1.08005 * 120.03075 * 180.24969 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9860 5.0187 -0.0028 8 6 4.3238 5.4091 -1.4186 9 8 4.0376 4.6696 -2.3362 10 7 4.9447 6.5796 -1.6648 11 6 5.2909 7.4726 -0.5562 12 6 5.2736 6.9590 -3.0411 13 1 4.9412 6.1764 -3.7230 14 6 6.7871 7.1413 -3.1721 15 6 4.5802 8.2521 -3.3851 16 1 3.9572 8.7424 -2.6517 17 6 4.7420 8.8096 -4.6357 18 7 5.5011 8.2128 -5.5285 19 14 3.8831 10.4128 -5.0618 20 1 4.7650 11.5551 -4.7113 21 1 3.5869 10.4442 -6.5166 22 1 2.6148 10.5135 -4.2961 23 6 4.0559 2.5173 -0.0071 24 6 5.5607 2.5983 -0.0145 25 6 3.4311 1.2849 -0.0004 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.2128 2.3203 -0.0003 30 1 1.3339 4.5114 -0.0011 31 1 4.9013 4.9605 0.5863 32 1 3.3212 5.7654 0.4313 33 1 4.4648 8.1590 -0.3710 34 1 5.4808 6.8822 0.3402 35 1 6.1849 8.0409 -0.8131 36 1 7.2886 6.2060 -2.9233 37 1 7.1191 7.9242 -2.4902 38 1 7.0318 7.4232 -4.1963 39 1 5.6146 8.6049 -6.4085 40 1 5.9287 2.6164 1.0114 41 1 5.9688 1.7299 -0.5315 42 1 5.8730 3.5072 -0.5286 43 1 4.0206 0.3799 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = -72.091665 kcal Electronic energy + Delta-G solvation = -23419.897669 eV Core-core repulsion = 20043.615579 eV Total energy + Delta-G solvation = -3376.282090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40343 -40.50383 -38.68945 -37.01131 -34.82054 -33.60143 -33.14784 -31.32653 -29.39374 -27.59560 -27.44861 -27.35501 -27.10566 -23.58923 -22.81139 -21.56858 -19.80681 -18.66323 -18.49575 -17.86272 -17.52829 -17.08168 -16.62087 -16.40898 -16.15792 -15.78080 -15.14959 -14.78903 -14.69553 -14.43444 -14.19674 -14.10477 -13.88623 -13.46347 -13.22347 -13.05396 -12.99090 -12.95468 -12.89857 -12.73683 -12.60061 -12.53472 -12.20315 -12.16484 -12.10224 -11.78345 -11.68240 -11.15237 -10.63860 -10.44824 -9.70303 -9.26406 -8.99889 -8.13414 -6.30239 0.39877 0.44866 1.40777 1.42543 1.52320 1.89964 2.33520 2.38416 2.50961 2.86055 3.14099 3.76742 3.82614 3.95510 4.04050 4.20507 4.30956 4.38304 4.39050 4.43051 4.51164 4.60385 4.67609 4.73129 4.75232 4.80738 4.83566 4.86318 4.90820 5.03920 5.07877 5.11133 5.19794 5.35675 5.42758 5.48956 5.66016 5.70732 5.72192 5.84959 6.07593 6.18695 6.46874 6.78748 6.91382 7.35596 7.56511 8.90600 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022831 B = 0.003659 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.083902 B = 7651.337197 C = 8136.067287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.115 3.885 4 C -0.218 4.218 5 C -0.077 4.077 6 C -0.115 4.115 7 C -0.085 4.085 8 C 0.497 3.503 9 O -0.598 6.598 10 N -0.604 5.604 11 C 0.081 3.919 12 C 0.262 3.738 13 H 0.005 0.995 14 C -0.133 4.133 15 C -0.537 4.537 16 H 0.060 0.940 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.271 1.271 23 C -0.041 4.041 24 C -0.114 4.114 25 C -0.169 4.169 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.121 0.879 29 H 0.147 0.853 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.020 0.980 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.264 0.736 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 -9.628 17.149 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.070 3.930 4 C -0.236 4.236 5 C -0.095 4.095 6 C -0.115 4.115 7 C -0.124 4.124 8 C 0.286 3.714 9 O -0.480 6.480 10 N -0.335 5.335 11 C -0.062 4.062 12 C 0.160 3.840 13 H 0.023 0.977 14 C -0.191 4.191 15 C -0.576 4.576 16 H 0.079 0.921 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.195 1.195 23 C -0.041 4.041 24 C -0.170 4.170 25 C -0.188 4.188 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.165 0.835 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.159 -10.154 16.494 20.044 hybrid contribution -0.637 0.937 -1.023 1.527 sum -5.796 -9.217 15.470 18.917 Atomic orbital electron populations 1.23325 0.76616 1.05529 1.02081 1.86019 1.23368 1.26690 1.88831 1.19132 0.92525 0.84655 0.96695 1.21359 1.00914 0.91816 1.09515 1.21037 0.93939 0.97975 0.96564 1.19336 0.93782 0.94029 1.04377 1.20677 1.03557 0.95447 0.92723 1.21253 0.77248 0.80788 0.92082 1.90642 1.55697 1.53139 1.48534 1.48257 1.57191 1.18935 1.09092 1.21846 1.01305 0.94396 0.88610 1.18472 0.92768 0.94148 0.78602 0.97700 1.21877 0.96610 0.97951 1.02679 1.21609 1.29481 1.07475 0.99036 0.92144 1.25751 0.95881 1.00992 0.95998 1.70028 1.39318 1.40656 1.05787 0.85462 0.78950 0.79552 0.77082 1.19183 1.21276 1.19520 1.19740 0.96952 0.91690 0.95726 1.20854 0.89911 1.02708 1.03574 1.20409 0.91815 0.98272 1.08290 0.91413 0.92537 0.86077 0.83523 0.84795 0.85619 0.86265 0.92644 0.88359 0.91246 0.96101 0.93229 0.91610 0.92723 0.88059 0.90985 0.92887 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.25 10.50 -92.46 -0.97 -9.22 16 3 C 0.12 3.19 6.69 22.51 0.15 3.34 16 4 C -0.22 -5.69 9.04 22.37 0.20 -5.48 16 5 C -0.08 -2.18 9.67 22.25 0.22 -1.97 16 6 C -0.11 -3.43 4.37 -19.85 -0.09 -3.52 16 7 C -0.08 -2.36 3.70 29.10 0.11 -2.25 16 8 C 0.50 20.35 6.86 87.66 0.60 20.95 16 9 O -0.60 -30.98 15.36 -3.03 -0.05 -31.03 16 10 N -0.60 -25.28 2.75 -826.80 -2.28 -27.55 16 11 C 0.08 2.43 9.48 127.77 1.21 3.64 16 12 C 0.26 13.80 2.64 44.25 0.12 13.92 16 13 H 0.01 0.32 6.90 -2.39 -0.02 0.30 16 14 C -0.13 -6.44 8.95 71.98 0.64 -5.80 16 15 C -0.54 -29.51 8.37 25.60 0.21 -29.30 16 16 H 0.06 3.21 7.65 -2.91 -0.02 3.19 16 17 C 0.01 0.72 5.30 84.65 0.45 1.17 16 18 N -0.92 -53.73 11.32 21.45 0.24 -53.49 16 19 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 C -0.04 -1.19 5.88 -19.88 -0.12 -1.30 16 24 C -0.11 -2.81 9.21 71.23 0.66 -2.15 16 25 C -0.17 -4.80 9.64 22.37 0.22 -4.58 16 26 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 27 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 28 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.15 2.98 6.30 -2.91 -0.02 2.97 16 30 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 31 H 0.13 2.70 6.26 -2.39 -0.01 2.69 16 32 H 0.12 2.71 8.02 -2.39 -0.02 2.69 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 2.04 6.44 -2.38 -0.02 2.02 16 35 H 0.07 2.14 6.43 -2.39 -0.02 2.12 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 2.16 6.66 -2.39 -0.02 2.14 16 38 H 0.07 3.57 6.07 -2.38 -0.01 3.55 16 39 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.68 8.09 -2.39 -0.02 1.67 16 42 H 0.05 1.51 6.14 -2.39 -0.01 1.49 16 43 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -74.91 347.66 5.67 -69.24 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.00 Total: 18.57 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 5.69 Total: -11.93 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -2.03 Total: -81.04 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.02 Total: -40.25 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -74.91 5.67 -69.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.853 kcal (2) G-P(sol) polarization free energy of solvation -74.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds