Wall clock time and date at job start Tue Mar 31 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38751 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05809 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94633 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47464 * 265.00532 * 7 6 5 9 9 O 1.21282 * 119.99932 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00051 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00106 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.46932 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47035 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00316 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99720 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00015 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99811 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47473 * 89.99583 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99640 * 18 16 14 21 21 H 1.48501 * 109.46963 * 329.99582 * 18 16 14 22 22 C 1.38246 * 120.11014 * 0.02562 * 6 5 4 23 23 C 1.50704 * 119.97128 * 180.02562 * 22 6 5 24 24 C 1.38162 * 120.05734 * 359.76698 * 22 6 5 25 25 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 27 27 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 28 28 H 1.08002 * 120.02961 * 0.02562 * 4 3 2 29 29 H 1.08007 * 119.96925 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.47297 * 25.00295 * 7 6 5 31 31 H 1.09002 * 109.47382 * 144.99782 * 7 6 5 32 32 H 0.96996 * 120.00088 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.46761 * 300.00220 * 11 10 8 34 34 H 1.08997 * 109.46865 * 59.99452 * 11 10 8 35 35 H 1.08999 * 109.47289 * 299.99906 * 12 11 10 36 36 H 1.09001 * 109.46836 * 60.00470 * 12 11 10 37 37 H 1.08999 * 109.47255 * 300.00169 * 13 12 11 38 38 H 1.08997 * 109.46720 * 59.99925 * 13 12 11 39 39 H 0.96999 * 119.99854 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.46973 * 90.00063 * 23 22 6 41 41 H 1.08992 * 109.47226 * 210.00189 * 23 22 6 42 42 H 1.09000 * 109.46823 * 330.00052 * 23 22 6 43 43 H 1.07998 * 120.02953 * 180.25220 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 6 4.3237 5.4103 -1.4159 9 8 4.0375 4.6717 -2.3343 10 7 4.9448 6.5811 -1.6612 11 6 5.2736 6.9617 -3.0372 12 6 5.9681 8.3250 -3.0371 13 6 6.3121 8.7222 -4.4741 14 6 6.9967 10.0647 -4.4739 15 1 7.1689 10.5830 -3.5422 16 6 7.4024 10.6317 -5.6635 17 7 7.1923 10.0008 -6.7980 18 14 8.2504 12.2962 -5.6634 19 1 9.7178 12.1042 -5.5413 20 1 7.9479 13.0059 -6.9323 21 1 7.7594 13.1017 -4.5165 22 6 4.0559 2.5172 -0.0011 23 6 5.5607 2.5983 -0.0011 24 6 3.4311 1.2849 0.0038 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2127 2.3204 0.0014 29 1 1.3339 4.5114 0.0008 30 1 3.3213 5.7651 0.4342 31 1 4.9012 4.9600 0.5886 32 1 5.1740 7.1717 -0.9267 33 1 5.9382 6.2149 -3.4717 34 1 4.3585 7.0205 -3.6264 35 1 5.3032 9.0715 -2.6027 36 1 6.8832 8.2665 -2.4477 37 1 6.9772 7.9756 -4.9081 38 1 5.3973 8.7804 -5.0637 39 1 7.4781 10.3996 -7.6348 40 1 5.9236 2.6173 1.0266 41 1 5.9714 1.7294 -0.5153 42 1 5.8756 3.5067 -0.5145 43 1 4.0206 0.3800 0.0075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931970442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:09 Heat of formation + Delta-G solvation = -75.589333 kcal Electronic energy + Delta-G solvation = -22059.363233 eV Core-core repulsion = 18682.929473 eV Total energy + Delta-G solvation = -3376.433760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55990 -39.45289 -37.83055 -35.35920 -33.31565 -32.83022 -32.35058 -31.12907 -28.90964 -27.22386 -26.77092 -25.94269 -23.16169 -22.32859 -21.07069 -20.67486 -19.74914 -17.93107 -16.87415 -16.73778 -16.47919 -15.95567 -15.85849 -15.37272 -14.90890 -14.50220 -14.44804 -14.10934 -13.90625 -13.70624 -13.39705 -13.20588 -12.45113 -12.39321 -12.28916 -12.22631 -12.07578 -11.84974 -11.60630 -11.46412 -11.08252 -10.94522 -10.90584 -10.73302 -10.60061 -9.86994 -9.85472 -9.37278 -9.12311 -8.90263 -8.74915 -8.37933 -8.20375 -6.02407 -4.05581 1.20141 1.27173 2.82259 3.04090 3.30180 3.33757 3.36783 3.39626 3.73773 4.43682 4.54587 4.56850 4.71160 4.79709 4.85839 5.01792 5.05831 5.08365 5.15690 5.18618 5.32667 5.33290 5.44802 5.49298 5.61048 5.74055 5.78149 5.80335 5.96617 6.14894 6.16672 6.22819 6.50295 6.50533 6.59978 6.61922 6.84253 7.00471 7.20546 7.62965 7.74361 7.75582 7.96353 8.36892 8.44946 9.01160 9.58571 11.08863 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.039462 B = 0.002222 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.381192 B =12598.322077 C =12741.104217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.127 3.873 4 C -0.213 4.213 5 C -0.064 4.064 6 C -0.099 4.099 7 C -0.101 4.101 8 C 0.506 3.494 9 O -0.534 6.534 10 N -0.729 5.729 11 C 0.117 3.883 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.028 4.028 23 C -0.118 4.118 24 C -0.152 4.152 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.398 0.602 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 -16.647 18.917 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.082 3.918 4 C -0.231 4.231 5 C -0.082 4.082 6 C -0.100 4.100 7 C -0.141 4.141 8 C 0.291 3.709 9 O -0.410 6.410 10 N -0.380 5.380 11 C -0.006 4.006 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.029 4.029 23 C -0.174 4.174 24 C -0.171 4.171 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.119 -17.357 18.031 27.386 hybrid contribution 0.234 1.411 0.133 1.436 sum -10.885 -15.946 18.164 26.508 Atomic orbital electron populations 1.23035 0.78514 1.03783 1.01391 1.86053 1.21305 1.27127 1.88867 1.18969 0.92272 0.84019 0.96539 1.21118 0.99813 0.92273 1.09939 1.20746 0.93682 0.97104 0.96637 1.19045 0.93224 0.93372 1.04361 1.20652 1.02427 0.95636 0.95348 1.20521 0.77951 0.81426 0.90956 1.90729 1.52704 1.51360 1.46233 1.46240 1.60464 1.20783 1.10541 1.21624 0.99997 0.97862 0.81103 1.21883 0.98752 0.92910 1.02291 1.19032 0.96935 0.96403 0.89062 1.21203 1.38277 1.03844 0.92747 0.92642 1.25041 0.96084 0.97735 0.95673 1.69964 1.47095 1.38493 0.97697 0.86576 0.79833 0.84047 0.77422 1.20657 1.21211 1.19899 1.19474 0.95960 0.91587 0.95838 1.20856 0.90829 1.03540 1.02217 1.20200 0.91263 0.97961 1.07657 0.88359 0.92724 0.92604 0.85619 0.85858 0.88245 0.88036 0.76865 0.91863 0.91908 0.92756 0.92739 0.96294 0.96306 0.92918 0.90797 0.91125 0.91141 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.45 10.50 -19.44 -0.20 -3.65 16 3 C 0.13 1.49 6.69 -39.22 -0.26 1.23 16 4 C -0.21 -2.30 9.04 -39.43 -0.36 -2.65 16 5 C -0.06 -0.71 9.67 -39.61 -0.38 -1.09 16 6 C -0.10 -1.17 4.37 -104.60 -0.46 -1.62 16 7 C -0.10 -1.02 5.15 -29.04 -0.15 -1.17 16 8 C 0.51 7.23 7.04 -10.99 -0.08 7.15 16 9 O -0.53 -10.05 16.03 5.56 0.09 -9.96 16 10 N -0.73 -10.06 5.56 -60.29 -0.33 -10.39 16 11 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 12 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.03 -0.33 5.88 -104.64 -0.62 -0.95 16 23 C -0.12 -1.16 9.21 36.01 0.33 -0.83 16 24 C -0.15 -1.79 9.64 -39.43 -0.38 -2.17 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 27 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 29 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 30 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.10 0.80 6.98 -51.93 -0.36 0.44 16 32 H 0.40 4.25 8.47 -40.82 -0.35 3.90 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 42 H 0.07 0.76 6.15 -51.93 -0.32 0.44 16 43 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -34.34 359.89 -8.14 -42.48 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.76 Total: 0.07 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.07 Total: -14.29 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.40 Total: -36.51 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.11 Total: -13.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.34 -8.14 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931970442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.106 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds