Wall clock time and date at job start Tue Mar 31 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38751 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05809 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94633 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47464 * 265.00532 * 7 6 5 9 9 O 1.21282 * 119.99932 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00051 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00106 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.46932 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47035 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00316 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99720 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00015 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99811 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47473 * 89.99583 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99640 * 18 16 14 21 21 H 1.48501 * 109.46963 * 329.99582 * 18 16 14 22 22 C 1.38246 * 120.11014 * 0.02562 * 6 5 4 23 23 C 1.50704 * 119.97128 * 180.02562 * 22 6 5 24 24 C 1.38162 * 120.05734 * 359.76698 * 22 6 5 25 25 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 27 27 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 28 28 H 1.08002 * 120.02961 * 0.02562 * 4 3 2 29 29 H 1.08007 * 119.96925 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.47297 * 25.00295 * 7 6 5 31 31 H 1.09002 * 109.47382 * 144.99782 * 7 6 5 32 32 H 0.96996 * 120.00088 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.46761 * 300.00220 * 11 10 8 34 34 H 1.08997 * 109.46865 * 59.99452 * 11 10 8 35 35 H 1.08999 * 109.47289 * 299.99906 * 12 11 10 36 36 H 1.09001 * 109.46836 * 60.00470 * 12 11 10 37 37 H 1.08999 * 109.47255 * 300.00169 * 13 12 11 38 38 H 1.08997 * 109.46720 * 59.99925 * 13 12 11 39 39 H 0.96999 * 119.99854 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.46973 * 90.00063 * 23 22 6 41 41 H 1.08992 * 109.47226 * 210.00189 * 23 22 6 42 42 H 1.09000 * 109.46823 * 330.00052 * 23 22 6 43 43 H 1.07998 * 120.02953 * 180.25220 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 6 4.3237 5.4103 -1.4159 9 8 4.0375 4.6717 -2.3343 10 7 4.9448 6.5811 -1.6612 11 6 5.2736 6.9617 -3.0372 12 6 5.9681 8.3250 -3.0371 13 6 6.3121 8.7222 -4.4741 14 6 6.9967 10.0647 -4.4739 15 1 7.1689 10.5830 -3.5422 16 6 7.4024 10.6317 -5.6635 17 7 7.1923 10.0008 -6.7980 18 14 8.2504 12.2962 -5.6634 19 1 9.7178 12.1042 -5.5413 20 1 7.9479 13.0059 -6.9323 21 1 7.7594 13.1017 -4.5165 22 6 4.0559 2.5172 -0.0011 23 6 5.5607 2.5983 -0.0011 24 6 3.4311 1.2849 0.0038 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2127 2.3204 0.0014 29 1 1.3339 4.5114 0.0008 30 1 3.3213 5.7651 0.4342 31 1 4.9012 4.9600 0.5886 32 1 5.1740 7.1717 -0.9267 33 1 5.9382 6.2149 -3.4717 34 1 4.3585 7.0205 -3.6264 35 1 5.3032 9.0715 -2.6027 36 1 6.8832 8.2665 -2.4477 37 1 6.9772 7.9756 -4.9081 38 1 5.3973 8.7804 -5.0637 39 1 7.4781 10.3996 -7.6348 40 1 5.9236 2.6173 1.0266 41 1 5.9714 1.7294 -0.5153 42 1 5.8756 3.5067 -0.5145 43 1 4.0206 0.3800 0.0075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931970442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:09 Heat of formation + Delta-G solvation = -97.636273 kcal Electronic energy + Delta-G solvation = -22060.319260 eV Core-core repulsion = 18682.929473 eV Total energy + Delta-G solvation = -3377.389787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41774 -40.50117 -38.68049 -36.89225 -35.15867 -33.69572 -33.33090 -32.72346 -29.77691 -28.61145 -27.46147 -27.14931 -24.86765 -23.23189 -22.28742 -21.99312 -20.93362 -18.68716 -18.55358 -17.90796 -17.56127 -17.06916 -16.64503 -16.62088 -16.48431 -15.88655 -15.58481 -15.06393 -14.89260 -14.66995 -14.32053 -14.19018 -14.08996 -13.75573 -13.58831 -13.15954 -13.06095 -12.90834 -12.75009 -12.67006 -12.53895 -12.38349 -12.25301 -11.81537 -11.69523 -11.65902 -11.57037 -11.23411 -10.80635 -10.55483 -10.04243 -9.71954 -9.02808 -8.19352 -6.30975 0.38016 0.42719 1.41986 1.43428 1.54393 1.71425 2.25904 2.37629 2.43220 2.82892 3.14329 3.72543 3.82101 3.94577 4.07154 4.18005 4.23127 4.25520 4.32264 4.37639 4.37941 4.43038 4.56780 4.60497 4.67487 4.73373 4.79987 4.83817 4.95731 5.02278 5.04352 5.17932 5.19172 5.34842 5.41275 5.47610 5.55332 5.68321 5.71145 5.84313 5.84518 6.22332 6.45438 6.66616 6.87004 7.35411 7.38789 8.92766 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.039462 B = 0.002222 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.381192 B =12598.322077 C =12741.104217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.115 3.885 4 C -0.220 4.220 5 C -0.073 4.073 6 C -0.118 4.118 7 C -0.089 4.089 8 C 0.506 3.494 9 O -0.584 6.584 10 N -0.716 5.716 11 C 0.131 3.869 12 C -0.101 4.101 13 C 0.022 3.978 14 C -0.540 4.540 15 H 0.068 0.932 16 C -0.006 4.006 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.259 1.259 22 C -0.041 4.041 23 C -0.116 4.116 24 C -0.173 4.173 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.417 0.583 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.069 0.931 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.160 -15.545 21.347 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.070 3.930 4 C -0.238 4.238 5 C -0.091 4.091 6 C -0.119 4.119 7 C -0.129 4.129 8 C 0.294 3.706 9 O -0.464 6.464 10 N -0.369 5.369 11 C 0.006 3.994 12 C -0.139 4.139 13 C -0.016 4.016 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.183 1.183 22 C -0.041 4.041 23 C -0.172 4.172 24 C -0.191 4.191 25 H 0.137 0.863 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.164 0.836 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.254 0.746 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.009 0.991 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.262 -16.241 20.517 28.488 hybrid contribution 0.213 0.975 -0.641 1.186 sum -11.049 -15.266 19.876 27.390 Atomic orbital electron populations 1.23321 0.76560 1.05513 1.02136 1.86028 1.23422 1.26942 1.88789 1.19189 0.92569 0.84725 0.96556 1.21394 1.00954 0.91961 1.09524 1.21080 0.93917 0.97966 0.96178 1.19312 0.93714 0.94028 1.04816 1.20680 1.04262 0.95562 0.92355 1.21284 0.76543 0.80448 0.92302 1.90715 1.54660 1.52799 1.48239 1.46002 1.60227 1.21289 1.09386 1.21170 0.98557 0.96462 0.83176 1.21588 0.99898 0.94020 0.98353 1.18957 0.94848 0.95284 0.92466 1.21689 1.38057 1.04711 0.93318 0.91391 1.26058 0.96895 1.02093 0.95280 1.70116 1.48457 1.40577 0.98472 0.85397 0.78720 0.78849 0.77765 1.19816 1.21134 1.18311 1.19764 0.96948 0.91746 0.95669 1.20876 0.89851 1.02922 1.03587 1.20423 0.91822 0.98431 1.08432 0.86267 0.91413 0.92341 0.83605 0.84087 0.85095 0.85322 0.74577 0.93635 0.93716 0.91265 0.91209 0.99131 0.99154 0.92845 0.88358 0.91223 0.92175 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.14 10.50 -92.48 -0.97 -8.11 16 3 C 0.11 2.66 6.69 22.51 0.15 2.81 16 4 C -0.22 -4.52 9.04 22.36 0.20 -4.32 16 5 C -0.07 -1.53 9.67 22.25 0.22 -1.32 16 6 C -0.12 -2.60 4.37 -19.85 -0.09 -2.68 16 7 C -0.09 -1.56 5.15 29.10 0.15 -1.41 16 8 C 0.51 13.78 7.04 87.66 0.62 14.40 16 9 O -0.58 -22.12 16.03 -3.04 -0.05 -22.17 16 10 N -0.72 -18.52 5.56 -463.06 -2.57 -21.09 16 11 C 0.13 4.58 5.67 86.38 0.49 5.07 16 12 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 13 C 0.02 1.15 4.97 29.85 0.15 1.30 16 14 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 16 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 17 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 18 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 22 C -0.04 -0.94 5.88 -19.88 -0.12 -1.05 16 23 C -0.12 -2.16 9.21 71.24 0.66 -1.51 16 24 C -0.17 -4.07 9.64 22.37 0.22 -3.85 16 25 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 27 H 0.06 0.67 7.66 -2.39 -0.02 0.66 16 28 H 0.15 2.23 6.30 -2.91 -0.02 2.21 16 29 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.13 1.49 8.05 -2.39 -0.02 1.47 16 31 H 0.13 1.57 6.98 -2.39 -0.02 1.55 16 32 H 0.42 7.59 8.47 -92.71 -0.79 6.80 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 37 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 42 H 0.06 1.24 6.15 -2.39 -0.01 1.22 16 43 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -76.31 359.89 3.54 -72.77 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.22 Total: 14.55 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 4.61 Total: -24.54 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -2.29 Total: -78.21 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.02 Total: -30.28 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -76.31 3.54 -72.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931970442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.868 kcal (2) G-P(sol) polarization free energy of solvation -76.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds