Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 119.99757 * 2 1 4 4 C 1.38210 * 119.99611 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00286 * 359.75187 * 4 3 2 6 6 C 1.38214 * 120.00162 * 0.50778 * 5 4 3 7 7 C 1.50695 * 120.00433 * 179.76786 * 6 5 4 8 8 H 1.09004 * 109.47438 * 199.72267 * 7 6 5 9 9 N 1.46506 * 109.47137 * 319.72169 * 7 6 5 10 10 C 1.36931 * 119.99939 * 275.00232 * 9 7 6 11 11 H 1.08000 * 120.00644 * 359.97438 * 10 9 7 12 12 C 1.38815 * 119.99715 * 179.97438 * 10 9 7 13 13 N 1.31621 * 119.99673 * 179.72262 * 12 10 9 14 14 Si 1.86795 * 120.00115 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47274 * 89.99913 * 14 12 10 16 16 H 1.48505 * 109.47015 * 209.99478 * 14 12 10 17 17 H 1.48498 * 109.47362 * 329.99904 * 14 12 10 18 18 C 1.50700 * 109.47346 * 79.72210 * 7 6 5 19 19 O 1.20823 * 119.99955 * 239.99887 * 18 7 6 20 20 O 1.34231 * 119.99570 * 60.00244 * 18 7 6 21 21 C 1.45207 * 116.99565 * 179.97438 * 20 18 7 22 22 C 1.53002 * 109.47150 * 60.00157 * 21 20 18 23 23 C 1.52993 * 109.46787 * 179.97438 * 21 20 18 24 24 C 1.53002 * 109.47322 * 299.99881 * 21 20 18 25 25 C 1.38213 * 120.00167 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.46911 * 270.01962 * 1 2 3 27 27 H 1.08998 * 109.47394 * 30.01784 * 1 2 3 28 28 H 1.09004 * 109.47224 * 150.01874 * 1 2 3 29 29 H 1.07994 * 120.00209 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.00019 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.00420 * 180.27046 * 5 4 3 32 32 H 0.97000 * 119.99307 * 95.00026 * 9 7 6 33 33 H 0.97000 * 120.00043 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47264 * 59.99698 * 22 21 20 35 35 H 1.08992 * 109.47105 * 180.02562 * 22 21 20 36 36 H 1.09005 * 109.46716 * 300.00095 * 22 21 20 37 37 H 1.08998 * 109.47340 * 60.00436 * 23 21 20 38 38 H 1.09003 * 109.47117 * 180.02562 * 23 21 20 39 39 H 1.09004 * 109.47644 * 300.00046 * 23 21 20 40 40 H 1.09004 * 109.46962 * 60.00228 * 24 21 20 41 41 H 1.09001 * 109.47283 * 179.97438 * 24 21 20 42 42 H 1.09000 * 109.46723 * 300.00342 * 24 21 20 43 43 H 1.07999 * 119.99781 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0001 0.0063 6 6 3.5806 -1.1969 0.0008 7 6 4.3341 -2.5019 0.0018 8 1 3.6796 -3.2997 -0.3495 9 7 5.4950 -2.3963 -0.8857 10 6 5.3542 -2.6294 -2.2277 11 1 4.3877 -2.8916 -2.6319 12 6 6.4541 -2.5288 -3.0687 13 7 6.3199 -2.7582 -4.3577 14 14 8.1260 -2.0760 -2.3696 15 1 8.8504 -3.3120 -1.9787 16 1 8.9112 -1.3463 -3.3974 17 1 7.9459 -1.2098 -1.1769 18 6 4.7985 -2.8129 1.4013 19 8 5.9780 -2.9339 1.6336 20 8 3.9016 -2.9556 2.3898 21 6 4.4206 -3.2551 3.7125 22 6 5.3522 -2.1278 4.1622 23 6 3.2586 -3.3801 4.6998 24 6 5.1977 -4.5724 3.6692 25 6 2.1981 -1.1969 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5136 29 1 1.6583 2.1327 0.0004 30 1 4.1204 2.1327 0.0010 31 1 5.3516 0.0001 0.0111 32 1 6.3631 -2.1611 -0.5226 33 1 7.0885 -2.6883 -4.9454 34 1 4.7985 -1.1894 4.1930 35 1 5.7420 -2.3529 5.1548 36 1 6.1800 -2.0383 3.4587 37 1 2.5945 -4.1830 4.3797 38 1 3.6481 -3.6046 5.6928 39 1 2.7052 -2.4415 4.7306 40 1 6.0256 -4.4828 2.9658 41 1 5.5876 -4.7970 4.6620 42 1 4.5339 -5.3754 3.3488 43 1 1.6580 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933892735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -52.680202 kcal Electronic energy + Delta-G solvation = -24173.118299 eV Core-core repulsion = 20797.677953 eV Total energy + Delta-G solvation = -3375.440346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65118 -38.97881 -36.97191 -34.97961 -33.91512 -32.48907 -31.70889 -30.24172 -27.42286 -27.36891 -27.04154 -26.49319 -23.14848 -22.17427 -21.59124 -20.18979 -19.10559 -18.16763 -16.63844 -16.35919 -16.00099 -15.73242 -15.09071 -14.65409 -14.36646 -14.31323 -14.05653 -13.58878 -13.49257 -13.12391 -12.80503 -12.65333 -12.53406 -12.34328 -12.12128 -11.94354 -11.87363 -11.81949 -11.72627 -11.46272 -11.32893 -11.04870 -10.99549 -10.75355 -10.60220 -10.23546 -10.20685 -9.79549 -9.60741 -9.10481 -8.36175 -8.15955 -7.45542 -5.85188 -3.24487 1.74727 1.82800 2.61768 2.92596 3.38160 3.43586 3.45826 4.16930 4.54518 4.73267 4.77068 4.90440 4.97390 5.12814 5.14453 5.24826 5.38252 5.44046 5.48704 5.51395 5.54697 5.63858 5.66444 5.72017 5.73766 5.85216 5.86823 5.88359 5.96111 6.00785 6.03991 6.04911 6.28643 6.34410 6.42452 6.51757 6.77299 6.89646 6.92857 7.12156 7.43575 7.84198 8.18970 8.32145 9.07542 9.78676 9.95665 11.31537 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.007348 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.735561 B = 3809.658721 C = 5642.892718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.091 4.091 6 C -0.079 4.079 7 C 0.228 3.772 8 H 0.101 0.899 9 N -0.723 5.723 10 C -0.252 4.252 11 H 0.095 0.905 12 C 0.017 3.983 13 N -0.924 5.924 14 Si 0.881 3.119 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.275 1.275 18 C 0.466 3.534 19 O -0.500 6.500 20 O -0.347 6.347 21 C 0.114 3.886 22 C -0.182 4.182 23 C -0.138 4.138 24 C -0.183 4.183 25 C -0.102 4.102 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.374 0.626 33 H 0.262 0.738 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.166 3.125 16.913 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.109 4.109 6 C -0.082 4.082 7 C 0.115 3.885 8 H 0.119 0.881 9 N -0.366 5.366 10 C -0.380 4.380 11 H 0.113 0.887 12 C -0.180 4.180 13 N -0.570 5.570 14 Si 0.710 3.290 15 H -0.207 1.207 16 H -0.215 1.215 17 H -0.201 1.201 18 C 0.308 3.692 19 O -0.387 6.387 20 O -0.264 6.264 21 C 0.078 3.922 22 C -0.239 4.239 23 C -0.195 4.195 24 C -0.240 4.240 25 C -0.121 4.121 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.210 0.790 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.852 2.990 16.761 19.189 hybrid contribution 1.447 0.343 0.357 1.529 sum -7.405 3.334 17.118 18.947 Atomic orbital electron populations 1.20725 0.91675 1.02428 1.01717 1.19773 0.95593 0.93203 1.01054 1.20882 0.94168 0.97068 1.02362 1.21027 0.94226 0.97711 1.01119 1.20920 1.00090 0.91795 0.98142 1.20530 0.93557 0.95741 0.98421 1.18621 0.91133 0.95005 0.83697 0.88111 1.42618 1.05291 1.83876 1.04859 1.18953 0.97280 1.41256 0.80557 0.88724 1.24593 0.97436 1.00792 0.95140 1.69692 1.30285 1.54562 1.02504 0.86606 0.85496 0.78704 0.78146 1.20737 1.21547 1.20054 1.24336 0.84832 0.72295 0.87764 1.90515 1.18818 1.46215 1.83152 1.86599 1.40671 1.81228 1.17943 1.22105 0.94471 0.95343 0.80285 1.22472 1.00963 0.97879 1.02593 1.21819 0.97288 1.03140 0.97277 1.22489 1.01947 0.95970 1.03606 1.20826 0.93308 0.97419 1.00507 0.91709 0.92011 0.91690 0.86844 0.86656 0.86436 0.79019 0.92788 0.92089 0.91481 0.89752 0.91547 0.90762 0.91575 0.89623 0.91464 0.92025 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.00 0.36 -0.84 16 2 C -0.10 -1.40 5.88 -104.62 -0.62 -2.02 16 3 C -0.13 -1.84 9.70 -39.58 -0.38 -2.23 16 4 C -0.12 -1.97 10.05 -39.59 -0.40 -2.36 16 5 C -0.09 -1.70 9.32 -39.59 -0.37 -2.07 16 6 C -0.08 -1.47 4.84 -104.63 -0.51 -1.98 16 7 C 0.23 4.56 3.00 -70.23 -0.21 4.35 16 8 H 0.10 1.96 7.94 -51.93 -0.41 1.54 16 9 N -0.72 -17.38 4.05 -55.68 -0.23 -17.61 16 10 C -0.25 -6.99 10.40 -15.06 -0.16 -7.15 16 11 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 12 C 0.02 0.51 5.50 -17.43 -0.10 0.41 16 13 N -0.92 -28.64 13.97 55.49 0.78 -27.86 16 14 Si 0.88 22.50 27.74 -169.99 -4.71 17.78 16 15 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.27 -6.74 6.52 56.52 0.37 -6.37 16 18 C 0.47 8.65 6.61 36.01 0.24 8.89 16 19 O -0.50 -10.14 11.34 -18.75 -0.21 -10.35 16 20 O -0.35 -5.55 9.81 -39.26 -0.38 -5.93 16 21 C 0.11 1.50 1.13 -90.62 -0.10 1.40 16 22 C -0.18 -2.35 8.37 37.16 0.31 -2.04 16 23 C -0.14 -1.37 8.85 37.15 0.33 -1.04 16 24 C -0.18 -2.35 8.37 37.16 0.31 -2.04 16 25 C -0.10 -1.66 9.33 -39.58 -0.37 -2.03 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.12 2.33 7.73 -52.49 -0.41 1.92 16 32 H 0.37 9.23 4.85 -40.82 -0.20 9.04 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.31 5.89 -51.93 -0.31 1.01 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.34 5.89 -51.93 -0.31 1.04 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.12 1.73 8.04 -52.49 -0.42 1.31 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -31.60 353.12 -7.81 -39.40 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.71 Total: 9.98 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -1.66 Total: -10.74 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.55 Total: -45.47 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.60 Total: -16.28 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.60 -7.81 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933892735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.277 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds