Wall clock time and date at job start Tue Mar 31 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 119.99757 * 2 1 4 4 C 1.38210 * 119.99611 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00286 * 359.75187 * 4 3 2 6 6 C 1.38214 * 120.00162 * 0.50778 * 5 4 3 7 7 C 1.50695 * 120.00433 * 179.76786 * 6 5 4 8 8 H 1.09004 * 109.47438 * 199.72267 * 7 6 5 9 9 N 1.46506 * 109.47137 * 319.72169 * 7 6 5 10 10 C 1.36931 * 119.99939 * 275.00232 * 9 7 6 11 11 H 1.08000 * 120.00644 * 359.97438 * 10 9 7 12 12 C 1.38815 * 119.99715 * 179.97438 * 10 9 7 13 13 N 1.31621 * 119.99673 * 179.72262 * 12 10 9 14 14 Si 1.86795 * 120.00115 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47274 * 89.99913 * 14 12 10 16 16 H 1.48505 * 109.47015 * 209.99478 * 14 12 10 17 17 H 1.48498 * 109.47362 * 329.99904 * 14 12 10 18 18 C 1.50700 * 109.47346 * 79.72210 * 7 6 5 19 19 O 1.20823 * 119.99955 * 239.99887 * 18 7 6 20 20 O 1.34231 * 119.99570 * 60.00244 * 18 7 6 21 21 C 1.45207 * 116.99565 * 179.97438 * 20 18 7 22 22 C 1.53002 * 109.47150 * 60.00157 * 21 20 18 23 23 C 1.52993 * 109.46787 * 179.97438 * 21 20 18 24 24 C 1.53002 * 109.47322 * 299.99881 * 21 20 18 25 25 C 1.38213 * 120.00167 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.46911 * 270.01962 * 1 2 3 27 27 H 1.08998 * 109.47394 * 30.01784 * 1 2 3 28 28 H 1.09004 * 109.47224 * 150.01874 * 1 2 3 29 29 H 1.07994 * 120.00209 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.00019 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.00420 * 180.27046 * 5 4 3 32 32 H 0.97000 * 119.99307 * 95.00026 * 9 7 6 33 33 H 0.97000 * 120.00043 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47264 * 59.99698 * 22 21 20 35 35 H 1.08992 * 109.47105 * 180.02562 * 22 21 20 36 36 H 1.09005 * 109.46716 * 300.00095 * 22 21 20 37 37 H 1.08998 * 109.47340 * 60.00436 * 23 21 20 38 38 H 1.09003 * 109.47117 * 180.02562 * 23 21 20 39 39 H 1.09004 * 109.47644 * 300.00046 * 23 21 20 40 40 H 1.09004 * 109.46962 * 60.00228 * 24 21 20 41 41 H 1.09001 * 109.47283 * 179.97438 * 24 21 20 42 42 H 1.09000 * 109.46723 * 300.00342 * 24 21 20 43 43 H 1.07999 * 119.99781 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0001 0.0063 6 6 3.5806 -1.1969 0.0008 7 6 4.3341 -2.5019 0.0018 8 1 3.6796 -3.2997 -0.3495 9 7 5.4950 -2.3963 -0.8857 10 6 5.3542 -2.6294 -2.2277 11 1 4.3877 -2.8916 -2.6319 12 6 6.4541 -2.5288 -3.0687 13 7 6.3199 -2.7582 -4.3577 14 14 8.1260 -2.0760 -2.3696 15 1 8.8504 -3.3120 -1.9787 16 1 8.9112 -1.3463 -3.3974 17 1 7.9459 -1.2098 -1.1769 18 6 4.7985 -2.8129 1.4013 19 8 5.9780 -2.9339 1.6336 20 8 3.9016 -2.9556 2.3898 21 6 4.4206 -3.2551 3.7125 22 6 5.3522 -2.1278 4.1622 23 6 3.2586 -3.3801 4.6998 24 6 5.1977 -4.5724 3.6692 25 6 2.1981 -1.1969 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5136 29 1 1.6583 2.1327 0.0004 30 1 4.1204 2.1327 0.0010 31 1 5.3516 0.0001 0.0111 32 1 6.3631 -2.1611 -0.5226 33 1 7.0885 -2.6883 -4.9454 34 1 4.7985 -1.1894 4.1930 35 1 5.7420 -2.3529 5.1548 36 1 6.1800 -2.0383 3.4587 37 1 2.5945 -4.1830 4.3797 38 1 3.6481 -3.6046 5.6928 39 1 2.7052 -2.4415 4.7306 40 1 6.0256 -4.4828 2.9658 41 1 5.5876 -4.7970 4.6620 42 1 4.5339 -5.3754 3.3488 43 1 1.6580 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933892735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:18 Heat of formation + Delta-G solvation = -69.891362 kcal Electronic energy + Delta-G solvation = -24173.864631 eV Core-core repulsion = 20797.677953 eV Total energy + Delta-G solvation = -3376.186677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.02706 -40.24974 -38.33040 -36.69065 -35.11446 -34.15186 -33.15438 -31.90735 -28.63849 -28.39505 -28.28762 -27.60184 -25.03759 -23.56459 -22.86418 -21.49219 -20.56140 -20.03286 -18.01258 -17.64647 -17.52144 -17.08159 -16.66119 -16.11859 -15.97267 -15.62332 -15.23464 -14.89950 -14.59975 -14.53579 -14.34833 -13.90491 -13.84952 -13.59103 -13.33262 -13.11058 -13.02516 -12.93527 -12.89104 -12.86140 -12.80732 -12.48839 -12.30790 -12.22339 -11.97901 -11.90017 -11.79767 -11.39961 -11.24126 -11.00969 -9.68506 -9.57249 -9.34414 -8.09954 -5.46647 0.45440 0.56213 1.15597 1.31646 1.34823 1.40792 1.61797 2.40438 2.87319 3.21355 3.48738 3.63001 3.76329 3.79010 3.94057 3.97107 4.00568 4.11723 4.31856 4.36058 4.56427 4.58352 4.59357 4.70507 4.74404 4.80908 4.84168 4.87603 4.88458 4.94412 5.04122 5.11260 5.21604 5.25224 5.30020 5.37543 5.48357 5.61616 5.62912 5.73848 5.78482 6.11656 6.20168 6.75355 6.95033 7.64593 7.84382 9.10118 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.007348 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.735561 B = 3809.658721 C = 5642.892718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.126 4.126 5 C -0.121 4.121 6 C -0.097 4.097 7 C 0.221 3.779 8 H 0.102 0.898 9 N -0.730 5.730 10 C -0.229 4.229 11 H 0.070 0.930 12 C -0.043 4.043 13 N -0.970 5.970 14 Si 0.940 3.060 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.264 1.264 18 C 0.474 3.526 19 O -0.521 6.521 20 O -0.345 6.345 21 C 0.101 3.899 22 C -0.179 4.179 23 C -0.131 4.131 24 C -0.181 4.181 25 C -0.113 4.113 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.370 0.630 33 H 0.261 0.739 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 4.170 19.559 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.140 4.140 6 C -0.100 4.100 7 C 0.111 3.889 8 H 0.119 0.881 9 N -0.374 5.374 10 C -0.360 4.360 11 H 0.088 0.912 12 C -0.236 4.236 13 N -0.619 5.619 14 Si 0.768 3.232 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.190 1.190 18 C 0.317 3.683 19 O -0.409 6.409 20 O -0.261 6.261 21 C 0.066 3.934 22 C -0.236 4.236 23 C -0.188 4.188 24 C -0.238 4.238 25 C -0.132 4.132 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.112 0.888 32 H 0.205 0.795 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.761 4.042 19.470 22.610 hybrid contribution 1.854 0.027 -0.334 1.884 sum -8.907 4.069 19.136 21.496 Atomic orbital electron populations 1.20799 0.88684 1.03563 1.03280 1.20243 0.97751 0.92417 0.98879 1.21312 0.93599 0.98609 1.00610 1.21301 0.95303 0.97450 1.00379 1.20905 0.99231 0.93180 1.00643 1.20332 0.94583 0.94527 1.00569 1.18753 0.89822 0.96093 0.84243 0.88097 1.42506 1.06492 1.84342 1.04046 1.18885 0.96021 1.38820 0.82225 0.91188 1.25235 1.00853 1.02057 0.95443 1.69826 1.31169 1.57149 1.03804 0.85644 0.81387 0.78435 0.77728 1.20789 1.21353 1.18956 1.23829 0.84631 0.71969 0.87871 1.90519 1.19665 1.47198 1.83563 1.86565 1.39989 1.80702 1.18881 1.22590 0.96202 0.95456 0.79177 1.22442 0.99894 0.98001 1.03255 1.21845 0.96011 1.03611 0.97364 1.22466 1.00902 0.96015 1.04400 1.21056 0.92403 0.99090 1.00623 0.89770 0.90324 0.91201 0.83368 0.84660 0.88765 0.79477 0.93012 0.91968 0.88616 0.92891 0.91008 0.87935 0.91253 0.92890 0.88600 0.91630 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 10.01 71.23 0.71 -1.23 16 2 C -0.09 -2.47 5.88 -19.87 -0.12 -2.58 16 3 C -0.12 -3.24 9.70 22.27 0.22 -3.02 16 4 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 5 C -0.12 -4.58 9.32 22.27 0.21 -4.38 16 6 C -0.10 -3.66 4.84 -19.87 -0.10 -3.76 16 7 C 0.22 9.12 3.00 43.50 0.13 9.25 16 8 H 0.10 4.07 7.94 -2.38 -0.02 4.05 16 9 N -0.73 -36.27 4.05 -330.08 -1.34 -37.61 16 10 C -0.23 -13.22 10.40 84.04 0.87 -12.34 16 11 H 0.07 4.31 8.06 -2.91 -0.02 4.29 16 12 C -0.04 -2.58 5.50 84.86 0.47 -2.11 16 13 N -0.97 -62.10 13.97 21.65 0.30 -61.80 16 14 Si 0.94 47.87 27.74 68.60 1.90 49.77 16 15 H -0.28 -14.24 7.11 99.48 0.71 -13.54 16 16 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 17 H -0.26 -12.83 6.52 99.48 0.65 -12.18 16 18 C 0.47 17.97 6.61 71.24 0.47 18.44 16 19 O -0.52 -21.73 11.34 21.97 0.25 -21.48 16 20 O -0.34 -10.83 9.81 -51.43 -0.50 -11.34 16 21 C 0.10 2.49 1.13 -10.79 -0.01 2.48 16 22 C -0.18 -4.38 8.37 71.98 0.60 -3.78 16 23 C -0.13 -2.17 8.85 71.98 0.64 -1.53 16 24 C -0.18 -4.41 8.37 71.98 0.60 -3.80 16 25 C -0.11 -3.57 9.33 22.27 0.21 -3.36 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 28 H 0.07 1.23 8.09 -2.38 -0.02 1.21 16 29 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.09 3.91 7.73 -2.91 -0.02 3.89 16 32 H 0.37 18.81 4.85 -92.71 -0.45 18.36 16 33 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.65 5.89 -2.38 -0.01 1.64 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.66 5.89 -2.38 -0.01 1.65 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.13 3.70 8.04 -2.91 -0.02 3.67 16 Total: -1.00 -71.15 353.12 6.23 -64.92 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.48 Total: 32.91 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 5.13 Total: -15.39 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -1.03 Total: -99.40 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.26 Total: -32.82 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.90 Total: 49.77 kcal Total: -71.15 6.23 -64.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933892735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.968 kcal (2) G-P(sol) polarization free energy of solvation -71.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds