Wall clock time and date at job start Tue Mar 31 2020 07:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33456 * 126.82373 * 2 1 4 4 N 1.28520 * 109.36598 * 180.27628 * 3 2 1 5 5 N 1.28709 * 110.62525 * 359.72711 * 4 3 2 6 6 H 0.96993 * 126.00831 * 179.97438 * 5 4 3 7 7 C 1.36847 * 107.98965 * 359.97438 * 5 4 3 8 8 C 1.47399 * 127.16533 * 179.97438 * 7 5 4 9 9 N 1.31402 * 126.48560 * 185.70286 * 8 7 5 10 10 N 1.28511 * 109.92068 * 180.02562 * 9 8 7 11 11 C 1.31378 * 110.11625 * 0.02562 * 10 9 8 12 12 N 1.38408 * 126.35987 * 179.97438 * 11 10 9 13 13 C 1.46907 * 110.99731 * 250.76342 * 12 11 10 14 14 C 1.46896 * 111.00023 * 14.70880 * 12 11 10 15 15 H 1.09003 * 109.47271 * 55.00612 * 14 12 11 16 16 C 1.52998 * 109.47628 * 295.00527 * 14 12 11 17 17 C 1.50707 * 109.47337 * 175.00572 * 14 12 11 18 18 H 1.08000 * 119.99683 * 359.97438 * 17 14 12 19 19 C 1.37872 * 120.00002 * 180.02562 * 17 14 12 20 20 N 1.31517 * 120.00147 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 119.99865 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.47040 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47417 * 119.99417 * 21 19 17 24 24 H 1.48498 * 109.47267 * 239.99484 * 21 19 17 25 25 N 1.36509 * 107.28349 * 0.22287 * 11 10 9 26 26 C 1.46506 * 127.17445 * 179.77440 * 25 11 10 27 27 H 1.08998 * 109.46878 * 270.17669 * 1 2 3 28 28 H 1.08997 * 109.47440 * 30.18307 * 1 2 3 29 29 H 1.09000 * 109.47089 * 150.18356 * 1 2 3 30 30 H 1.09001 * 109.47276 * 177.55868 * 13 12 11 31 31 H 1.08999 * 109.46814 * 297.55674 * 13 12 11 32 32 H 1.08997 * 109.46994 * 57.55195 * 13 12 11 33 33 H 1.08995 * 109.47433 * 300.00170 * 16 14 12 34 34 H 1.09005 * 109.47008 * 59.99881 * 16 14 12 35 35 H 1.09002 * 109.47557 * 179.97438 * 16 14 12 36 36 H 0.97001 * 119.99361 * 180.02562 * 20 19 17 37 37 H 1.08998 * 109.47182 * 86.79951 * 26 25 11 38 38 H 1.08994 * 109.46987 * 206.80120 * 26 25 11 39 39 H 1.09003 * 109.46727 * 326.80670 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3069 1.0683 0.0000 4 7 3.5329 0.6827 -0.0058 5 7 3.6041 -0.6024 -0.0041 6 1 4.4190 -1.1284 -0.0079 7 6 2.3279 -1.0963 0.0041 8 6 1.9214 -2.5131 0.0082 9 7 0.6948 -2.9744 -0.0889 10 7 0.7058 -4.2589 -0.0504 11 6 1.9382 -4.6968 0.0741 12 7 2.3350 -6.0206 0.1492 13 6 2.8002 -6.3547 1.5020 14 6 1.2522 -6.9195 -0.2719 15 1 0.9138 -6.6384 -1.2693 16 6 0.0859 -6.8092 0.7122 17 6 1.7578 -8.3390 -0.2946 18 1 2.7813 -8.5520 -0.0236 19 6 0.9140 -9.3655 -0.6622 20 7 -0.3323 -9.1061 -0.9926 21 14 1.5405 -11.1251 -0.6895 22 1 2.9672 -11.1490 -0.2781 23 1 0.7400 -11.9503 0.2505 24 1 1.4126 -11.6748 -2.0630 25 7 2.7542 -3.6034 0.1212 26 6 4.2127 -3.5926 0.2597 27 1 -0.3633 0.0032 1.0277 28 1 -0.3634 0.8883 -0.5166 29 1 -0.3633 -0.8916 -0.5110 30 1 3.0651 -7.4112 1.5446 31 1 3.6746 -5.7509 1.7450 32 1 2.0063 -6.1499 2.2202 33 1 0.4241 -7.0903 1.7094 34 1 -0.2799 -5.7825 0.7285 35 1 -0.7178 -7.4759 0.3994 36 1 -0.9259 -9.8284 -1.2509 37 1 4.6718 -3.6758 -0.7254 38 1 4.5261 -2.6603 0.7291 39 1 4.5251 -4.4340 0.8783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121372795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:30 Heat of formation + Delta-G solvation = 203.299129 kcal Electronic energy + Delta-G solvation = -23610.972765 eV Core-core repulsion = 20207.677675 eV Total energy + Delta-G solvation = -3403.295090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.54475 -42.60050 -37.54605 -35.27542 -33.96968 -33.29887 -32.59345 -29.56111 -28.87577 -28.13119 -27.42458 -25.48476 -25.27901 -23.65194 -22.78563 -21.69340 -20.80819 -19.63695 -18.32224 -16.96297 -16.72434 -16.27088 -16.00506 -15.87079 -15.24417 -14.70901 -14.11361 -13.80758 -13.67973 -13.40163 -13.12918 -13.05593 -12.62104 -12.52331 -11.99354 -11.79826 -11.59585 -11.38315 -11.12784 -11.02715 -10.88021 -10.85015 -10.63490 -10.40820 -10.23220 -10.12274 -10.00349 -9.83773 -8.93948 -8.72863 -8.49688 -7.61760 -6.13184 -4.21326 0.74384 2.00049 2.09831 2.25613 2.41959 3.14860 3.21771 3.30038 3.32042 3.83967 4.17167 4.19559 4.33725 4.42176 4.66500 4.73889 4.85538 5.00699 5.18629 5.34354 5.52851 5.66392 5.72250 5.79998 5.87134 5.87711 5.95510 6.25739 6.34893 6.38695 6.52765 6.75631 6.98548 7.17520 7.27053 7.48113 7.61865 7.82258 8.15146 8.18969 8.29475 8.78316 8.95403 9.43865 10.92951 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.034936 B = 0.003842 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.266549 B = 7286.555888 C = 7829.594266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.035 3.965 3 N -0.261 5.261 4 N -0.064 5.064 5 N -0.395 5.395 6 H 0.444 0.556 7 C 0.071 3.929 8 C 0.200 3.800 9 N -0.238 5.238 10 N -0.299 5.299 11 C 0.404 3.596 12 N -0.456 5.456 13 C 0.034 3.966 14 C 0.227 3.773 15 H 0.051 0.949 16 C -0.180 4.180 17 C -0.517 4.517 18 H 0.065 0.935 19 C 0.065 3.935 20 N -0.882 5.882 21 Si 0.900 3.100 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 N -0.489 5.489 26 C 0.074 3.926 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.022 0.978 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.263 0.737 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.358 12.152 4.040 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 N -0.129 5.129 4 N -0.044 5.044 5 N -0.122 5.122 6 H 0.293 0.707 7 C -0.063 4.063 8 C -0.064 4.064 9 N -0.082 5.082 10 N -0.145 5.145 11 C 0.050 3.950 12 N -0.180 5.180 13 C -0.113 4.113 14 C 0.123 3.877 15 H 0.069 0.931 16 C -0.239 4.239 17 C -0.556 4.556 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.520 5.520 21 Si 0.728 3.272 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 N -0.186 5.186 26 C -0.069 4.069 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.832 13.315 3.520 15.843 hybrid contribution 1.427 -2.348 0.495 2.792 sum 9.259 10.967 4.015 14.904 Atomic orbital electron populations 1.20275 0.84653 1.04584 1.03683 1.22164 0.98572 0.86445 1.03350 1.74919 0.95188 1.25955 1.16817 1.78175 1.16072 0.91545 1.18622 1.45492 1.08329 1.07103 1.51241 0.70746 1.18701 0.84801 0.90407 1.12364 1.20799 0.88276 0.84989 1.12373 1.74365 1.15245 1.03952 1.14602 1.75062 1.15015 1.01221 1.23233 1.23268 0.85187 0.88386 0.98181 1.59363 1.39533 0.94995 1.24131 1.22411 0.98171 1.03763 0.86916 1.19448 0.83827 0.88918 0.95470 0.93132 1.22568 1.02203 1.01521 0.97626 1.21028 0.97604 0.89882 1.47058 0.91722 1.24890 0.94789 0.99199 0.94933 1.69925 1.04953 1.32373 1.44718 0.86417 0.78844 0.84212 0.77758 1.19763 1.20959 1.20922 1.46173 1.08455 1.06063 1.57909 1.22152 0.76569 1.03828 1.04368 0.90219 0.90454 0.88368 0.88137 0.93581 0.94341 0.95932 0.92880 0.89128 0.92694 0.89418 0.91340 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.11 36.01 0.36 -0.48 16 2 C 0.03 0.47 7.30 -82.35 -0.60 -0.13 16 3 N -0.26 -3.67 12.36 33.53 0.41 -3.25 16 4 N -0.06 -0.82 13.35 60.35 0.81 -0.02 16 5 N -0.40 -4.22 6.72 33.31 0.22 -3.99 16 6 H 0.44 3.10 6.30 -190.34 -1.20 1.90 16 7 C 0.07 0.94 7.09 -82.37 -0.58 0.35 16 8 C 0.20 3.09 7.89 -153.77 -1.21 1.87 16 9 N -0.24 -4.38 10.53 32.52 0.34 -4.04 16 10 N -0.30 -6.21 8.92 30.32 0.27 -5.94 16 11 C 0.40 7.60 6.67 -318.85 -2.13 5.47 16 12 N -0.46 -9.00 4.77 -176.07 -0.84 -9.84 16 13 C 0.03 0.57 8.62 60.07 0.52 1.09 16 14 C 0.23 5.46 2.08 -68.86 -0.14 5.31 16 15 H 0.05 1.40 8.11 -51.93 -0.42 0.97 16 16 C -0.18 -4.29 8.27 37.16 0.31 -3.99 16 17 C -0.52 -13.11 7.85 -34.44 -0.27 -13.38 16 18 H 0.06 1.59 6.79 -52.49 -0.36 1.23 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.88 -24.20 11.32 55.43 0.63 -23.57 16 21 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 N -0.49 -7.14 3.24 -122.15 -0.40 -7.54 16 26 C 0.07 0.67 10.56 59.85 0.63 1.31 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.25 6.71 -51.93 -0.35 0.90 16 30 H 0.10 1.75 6.35 -51.93 -0.33 1.42 16 31 H 0.05 0.59 5.89 -51.93 -0.31 0.29 16 32 H 0.04 0.67 6.64 -51.93 -0.34 0.32 16 33 H 0.02 0.50 6.53 -51.93 -0.34 0.16 16 34 H 0.05 1.24 5.38 -51.93 -0.28 0.96 16 35 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.41 5.66 -51.93 -0.29 0.12 16 39 H 0.10 0.90 5.84 -51.93 -0.30 0.60 16 LS Contribution 312.81 15.07 4.71 4.71 Total: -1.00 -30.99 312.81 -7.31 -38.30 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.24 Total: 1.06 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -3.21 Total: -0.97 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 1.45 Total: -58.19 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.99 -7.31 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121372795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.601 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 203.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds