Wall clock time and date at job start Tue Mar 31 2020 07:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33456 * 126.82373 * 2 1 4 4 N 1.28520 * 109.36598 * 180.27628 * 3 2 1 5 5 N 1.28709 * 110.62525 * 359.72711 * 4 3 2 6 6 H 0.96993 * 126.00831 * 179.97438 * 5 4 3 7 7 C 1.36847 * 107.98965 * 359.97438 * 5 4 3 8 8 C 1.47399 * 127.16533 * 179.97438 * 7 5 4 9 9 N 1.31402 * 126.48560 * 185.70286 * 8 7 5 10 10 N 1.28511 * 109.92068 * 180.02562 * 9 8 7 11 11 C 1.31378 * 110.11625 * 0.02562 * 10 9 8 12 12 N 1.38408 * 126.35987 * 179.97438 * 11 10 9 13 13 C 1.46907 * 110.99731 * 250.76342 * 12 11 10 14 14 C 1.46896 * 111.00023 * 14.70880 * 12 11 10 15 15 H 1.09003 * 109.47271 * 55.00612 * 14 12 11 16 16 C 1.52998 * 109.47628 * 295.00527 * 14 12 11 17 17 C 1.50707 * 109.47337 * 175.00572 * 14 12 11 18 18 H 1.08000 * 119.99683 * 359.97438 * 17 14 12 19 19 C 1.37872 * 120.00002 * 180.02562 * 17 14 12 20 20 N 1.31517 * 120.00147 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 119.99865 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.47040 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47417 * 119.99417 * 21 19 17 24 24 H 1.48498 * 109.47267 * 239.99484 * 21 19 17 25 25 N 1.36509 * 107.28349 * 0.22287 * 11 10 9 26 26 C 1.46506 * 127.17445 * 179.77440 * 25 11 10 27 27 H 1.08998 * 109.46878 * 270.17669 * 1 2 3 28 28 H 1.08997 * 109.47440 * 30.18307 * 1 2 3 29 29 H 1.09000 * 109.47089 * 150.18356 * 1 2 3 30 30 H 1.09001 * 109.47276 * 177.55868 * 13 12 11 31 31 H 1.08999 * 109.46814 * 297.55674 * 13 12 11 32 32 H 1.08997 * 109.46994 * 57.55195 * 13 12 11 33 33 H 1.08995 * 109.47433 * 300.00170 * 16 14 12 34 34 H 1.09005 * 109.47008 * 59.99881 * 16 14 12 35 35 H 1.09002 * 109.47557 * 179.97438 * 16 14 12 36 36 H 0.97001 * 119.99361 * 180.02562 * 20 19 17 37 37 H 1.08998 * 109.47182 * 86.79951 * 26 25 11 38 38 H 1.08994 * 109.46987 * 206.80120 * 26 25 11 39 39 H 1.09003 * 109.46727 * 326.80670 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3069 1.0683 0.0000 4 7 3.5329 0.6827 -0.0058 5 7 3.6041 -0.6024 -0.0041 6 1 4.4190 -1.1284 -0.0079 7 6 2.3279 -1.0963 0.0041 8 6 1.9214 -2.5131 0.0082 9 7 0.6948 -2.9744 -0.0889 10 7 0.7058 -4.2589 -0.0504 11 6 1.9382 -4.6968 0.0741 12 7 2.3350 -6.0206 0.1492 13 6 2.8002 -6.3547 1.5020 14 6 1.2522 -6.9195 -0.2719 15 1 0.9138 -6.6384 -1.2693 16 6 0.0859 -6.8092 0.7122 17 6 1.7578 -8.3390 -0.2946 18 1 2.7813 -8.5520 -0.0236 19 6 0.9140 -9.3655 -0.6622 20 7 -0.3323 -9.1061 -0.9926 21 14 1.5405 -11.1251 -0.6895 22 1 2.9672 -11.1490 -0.2781 23 1 0.7400 -11.9503 0.2505 24 1 1.4126 -11.6748 -2.0630 25 7 2.7542 -3.6034 0.1212 26 6 4.2127 -3.5926 0.2597 27 1 -0.3633 0.0032 1.0277 28 1 -0.3634 0.8883 -0.5166 29 1 -0.3633 -0.8916 -0.5110 30 1 3.0651 -7.4112 1.5446 31 1 3.6746 -5.7509 1.7450 32 1 2.0063 -6.1499 2.2202 33 1 0.4241 -7.0903 1.7094 34 1 -0.2799 -5.7825 0.7285 35 1 -0.7178 -7.4759 0.3994 36 1 -0.9259 -9.8284 -1.2509 37 1 4.6718 -3.6758 -0.7254 38 1 4.5261 -2.6603 0.7291 39 1 4.5251 -4.4340 0.8783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121372795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:29 Heat of formation + Delta-G solvation = 183.274755 kcal Electronic energy + Delta-G solvation = -23611.841087 eV Core-core repulsion = 20207.677675 eV Total energy + Delta-G solvation = -3404.163412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.61022 -43.87327 -39.14190 -36.42409 -35.01973 -34.91597 -33.94908 -31.02151 -30.47753 -29.16021 -28.43181 -27.24728 -26.85819 -24.77455 -23.98461 -23.20014 -21.93333 -21.15230 -19.36040 -18.42356 -17.88465 -17.83979 -17.32483 -17.13604 -16.57384 -16.42525 -15.50552 -15.10786 -14.79126 -14.59654 -14.35559 -14.04755 -13.93172 -13.61399 -13.41714 -13.17525 -13.02939 -12.96633 -12.72020 -12.51037 -12.39557 -12.20892 -12.02644 -11.95043 -11.90411 -11.56515 -11.34410 -11.08718 -10.82080 -10.49806 -10.03882 -9.08351 -8.11051 -6.25848 -0.35292 0.84536 0.95989 1.25098 1.29472 1.45872 1.47920 1.58786 1.84478 2.42183 2.78035 2.97193 3.19332 3.27680 3.38189 3.66851 3.80766 3.92641 4.07720 4.25556 4.36955 4.51272 4.59981 4.65385 4.66410 4.79123 4.83471 4.97445 5.02030 5.12539 5.21923 5.31391 5.41244 5.53978 5.60356 5.64132 5.75668 5.97681 6.23534 6.51887 6.83535 7.12110 7.43129 7.59401 8.95361 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.034936 B = 0.003842 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.266549 B = 7286.555888 C = 7829.594266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.036 3.964 3 N -0.281 5.281 4 N -0.058 5.058 5 N -0.368 5.368 6 H 0.461 0.539 7 C 0.057 3.943 8 C 0.225 3.775 9 N -0.270 5.270 10 N -0.344 5.344 11 C 0.386 3.614 12 N -0.455 5.455 13 C 0.035 3.965 14 C 0.239 3.761 15 H 0.004 0.996 16 C -0.163 4.163 17 C -0.523 4.523 18 H 0.074 0.926 19 C 0.014 3.986 20 N -0.918 5.918 21 Si 0.966 3.034 22 H -0.259 1.259 23 H -0.283 1.283 24 H -0.286 1.286 25 N -0.477 5.477 26 C 0.058 3.942 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.262 0.738 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.114 12.976 4.846 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 N -0.148 5.148 4 N -0.038 5.038 5 N -0.098 5.098 6 H 0.313 0.687 7 C -0.077 4.077 8 C -0.042 4.042 9 N -0.112 5.112 10 N -0.189 5.189 11 C 0.030 3.970 12 N -0.179 5.179 13 C -0.112 4.112 14 C 0.133 3.867 15 H 0.022 0.978 16 C -0.223 4.223 17 C -0.561 4.561 18 H 0.092 0.908 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.792 3.208 22 H -0.182 1.182 23 H -0.209 1.209 24 H -0.212 1.212 25 N -0.173 5.173 26 C -0.083 4.083 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.651 14.157 4.341 18.240 hybrid contribution 0.656 -2.404 0.245 2.504 sum 11.307 11.754 4.586 16.942 Atomic orbital electron populations 1.20315 0.83842 1.04664 1.04343 1.22484 0.99356 0.86425 1.02160 1.74955 0.95538 1.26288 1.18061 1.78129 1.15763 0.92112 1.17822 1.45438 1.08279 1.06578 1.49463 0.68655 1.18468 0.85834 0.89174 1.14194 1.21021 0.87731 0.85875 1.09578 1.74285 1.17038 1.03093 1.16819 1.74895 1.16980 1.02587 1.24471 1.23054 0.85691 0.88699 0.99576 1.59216 1.37689 0.95049 1.25907 1.22498 0.99377 1.04205 0.85080 1.19000 0.85032 0.89486 0.93194 0.97810 1.22359 1.01373 1.00741 0.97799 1.21345 0.97912 0.90548 1.46299 0.90820 1.25739 0.94886 1.03290 0.94683 1.70084 1.06243 1.33437 1.45876 0.85382 0.78894 0.79200 0.77366 1.18243 1.20892 1.21201 1.46291 1.10226 1.04275 1.56481 1.22663 0.73138 1.06217 1.06262 0.89254 0.88797 0.89797 0.88897 0.89168 0.95419 0.95277 0.92795 0.92209 0.92880 0.87507 0.87882 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.11 71.24 0.72 -0.89 16 2 C 0.04 0.92 7.30 42.01 0.31 1.22 16 3 N -0.28 -7.28 12.36 -47.84 -0.59 -7.87 16 4 N -0.06 -1.31 13.35 37.02 0.49 -0.82 16 5 N -0.37 -6.61 6.72 -48.54 -0.33 -6.94 16 6 H 0.46 4.48 6.30 -219.91 -1.39 3.09 16 7 C 0.06 1.39 7.09 40.47 0.29 1.67 16 8 C 0.22 6.62 7.89 136.01 1.07 7.69 16 9 N -0.27 -10.01 10.53 -51.01 -0.54 -10.55 16 10 N -0.34 -14.62 8.92 -57.99 -0.52 -15.14 16 11 C 0.39 14.41 6.67 260.10 1.74 16.14 16 12 N -0.46 -17.82 4.77 -710.96 -3.39 -21.21 16 13 C 0.03 1.10 8.62 127.69 1.10 2.20 16 14 C 0.24 11.80 2.08 44.17 0.09 11.89 16 15 H 0.00 0.23 8.11 -2.39 -0.02 0.21 16 16 C -0.16 -8.10 8.27 71.98 0.60 -7.51 16 17 C -0.52 -26.70 7.85 25.60 0.20 -26.50 16 18 H 0.07 3.55 6.79 -2.91 -0.02 3.53 16 19 C 0.01 0.72 5.30 84.65 0.45 1.16 16 20 N -0.92 -52.01 11.32 21.45 0.24 -51.76 16 21 Si 0.97 41.30 29.54 68.60 2.03 43.33 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 25 N -0.48 -13.00 3.24 -540.36 -1.75 -14.75 16 26 C 0.06 0.83 10.56 127.77 1.35 2.18 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 2.14 6.71 -2.39 -0.02 2.12 16 30 H 0.09 3.10 6.35 -2.39 -0.02 3.08 16 31 H 0.09 2.03 5.89 -2.39 -0.01 2.02 16 32 H 0.03 0.93 6.64 -2.39 -0.02 0.91 16 33 H 0.03 1.34 6.53 -2.39 -0.02 1.32 16 34 H 0.05 2.65 5.38 -2.38 -0.01 2.63 16 35 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 36 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 0.73 5.66 -2.39 -0.01 0.72 16 39 H 0.11 1.48 5.84 -2.39 -0.01 1.46 16 Total: -1.00 -69.76 312.81 3.30 -66.47 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -0.26 Total: 9.97 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 7.91 Total: 9.27 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -6.37 Total: -129.04 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -69.76 3.30 -66.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121372795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.741 kcal (2) G-P(sol) polarization free energy of solvation -69.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds