Wall clock time and date at job start Tue Mar 31 2020 07:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33459 * 126.82740 * 2 1 4 4 N 1.28527 * 109.36952 * 180.31553 * 3 2 1 5 5 N 1.28711 * 110.61891 * 359.72790 * 4 3 2 6 6 H 0.97001 * 126.00092 * 179.97438 * 5 4 3 7 7 C 1.36835 * 107.99208 * 0.02562 * 5 4 3 8 8 C 1.47405 * 127.16452 * 179.97438 * 7 5 4 9 9 N 1.31400 * 126.48961 * 174.75588 * 8 7 5 10 10 N 1.28511 * 109.92538 * 179.82337 * 9 8 7 11 11 C 1.31375 * 110.11279 * 0.44948 * 10 9 8 12 12 N 1.38408 * 126.35576 * 179.74728 * 11 10 9 13 13 C 1.46907 * 110.99750 * 236.02230 * 12 11 10 14 14 C 1.46895 * 111.00466 * 359.97438 * 12 11 10 15 15 H 1.09001 * 109.47336 * 300.00417 * 14 12 11 16 16 C 1.53003 * 109.46966 * 59.99515 * 14 12 11 17 17 C 1.50703 * 109.47459 * 179.97438 * 14 12 11 18 18 H 1.07995 * 119.99456 * 0.02562 * 17 14 12 19 19 C 1.37876 * 120.00054 * 180.02562 * 17 14 12 20 20 N 1.31512 * 120.00153 * 180.02562 * 19 17 14 21 21 Si 1.86809 * 119.99994 * 359.97438 * 19 17 14 22 22 H 1.48493 * 109.46899 * 89.99961 * 21 19 17 23 23 H 1.48496 * 109.47074 * 210.00150 * 21 19 17 24 24 H 1.48504 * 109.46775 * 329.99907 * 21 19 17 25 25 N 1.36505 * 107.28395 * 359.73054 * 11 10 9 26 26 C 1.46504 * 127.17419 * 180.02562 * 25 11 10 27 27 H 1.08997 * 109.46734 * 270.13792 * 1 2 3 28 28 H 1.09000 * 109.47016 * 30.13547 * 1 2 3 29 29 H 1.09000 * 109.47598 * 150.13877 * 1 2 3 30 30 H 1.08999 * 109.47198 * 60.00812 * 13 12 11 31 31 H 1.09004 * 109.46513 * 180.02562 * 13 12 11 32 32 H 1.08996 * 109.47228 * 299.99945 * 13 12 11 33 33 H 1.09009 * 109.46633 * 60.00414 * 16 14 12 34 34 H 1.08993 * 109.47322 * 179.97438 * 16 14 12 35 35 H 1.08996 * 109.47528 * 300.00369 * 16 14 12 36 36 H 0.96996 * 120.00230 * 180.02562 * 20 19 17 37 37 H 1.08999 * 109.47118 * 264.26338 * 26 25 11 38 38 H 1.09004 * 109.46628 * 24.25728 * 26 25 11 39 39 H 1.08992 * 109.47463 * 144.25455 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3069 1.0683 0.0000 4 7 3.5330 0.6827 -0.0067 5 7 3.6040 -0.6025 -0.0055 6 1 4.4190 -1.1285 -0.0100 7 6 2.3279 -1.0963 0.0020 8 6 1.9213 -2.5131 0.0053 9 7 0.6952 -2.9740 0.1090 10 7 0.7056 -4.2585 0.0728 11 6 1.9382 -4.6971 -0.0465 12 7 2.3350 -6.0215 -0.1125 13 6 3.3174 -6.3295 0.9355 14 6 1.1779 -6.9226 -0.0305 15 1 0.6572 -6.7604 0.9132 16 6 0.2258 -6.6371 -1.1937 17 6 1.6482 -8.3524 -0.1062 18 1 2.7014 -8.5698 -0.2048 19 6 0.7338 -9.3828 -0.0494 20 7 1.1443 -10.6305 -0.1149 21 14 -1.0879 -9.0066 0.1219 22 1 -1.6948 -8.8734 -1.2268 23 1 -1.7543 -10.1109 0.8578 24 1 -1.2627 -7.7363 0.8710 25 7 2.7548 -3.6043 -0.0936 26 6 4.2140 -3.5945 -0.2232 27 1 -0.3633 0.0025 1.0277 28 1 -0.3633 0.8888 -0.5159 29 1 -0.3634 -0.8912 -0.5117 30 1 2.8742 -6.1459 1.9142 31 1 3.6125 -7.3761 0.8604 32 1 4.1946 -5.6950 0.8090 33 1 0.7465 -6.7993 -2.1376 34 1 -0.6326 -7.3061 -1.1332 35 1 -0.1144 -5.6031 -1.1395 36 1 0.5010 -11.3554 -0.0754 37 1 4.6660 -3.5131 0.7653 38 1 4.5428 -4.5190 -0.6980 39 1 4.5190 -2.7444 -0.8333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121372796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:33 Heat of formation + Delta-G solvation = 209.189203 kcal Electronic energy + Delta-G solvation = -23696.262777 eV Core-core repulsion = 20293.223100 eV Total energy + Delta-G solvation = -3403.039677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.61195 -42.73807 -37.66238 -35.41719 -34.05510 -33.33812 -32.60295 -30.35561 -29.62970 -28.31419 -27.51714 -25.68330 -24.62603 -23.72030 -22.95515 -21.85092 -20.94049 -19.70412 -18.39972 -17.34291 -16.84535 -16.67520 -16.12498 -15.87439 -15.29639 -14.90783 -14.27781 -13.89171 -13.81864 -13.61351 -13.14484 -13.11551 -12.87953 -12.68172 -12.35886 -12.05716 -11.91806 -11.48128 -11.30646 -11.11753 -11.02671 -10.85224 -10.74592 -10.49732 -10.34015 -10.21655 -10.09358 -9.52998 -9.34990 -8.84946 -8.69490 -7.71584 -6.23562 -4.26478 0.67188 1.91884 2.00558 2.17173 2.33084 3.01932 3.24406 3.35170 3.39741 3.77267 4.03187 4.13621 4.26947 4.30032 4.57696 4.61422 4.76218 4.94390 5.10092 5.16100 5.35548 5.59557 5.62897 5.67361 5.69806 5.78809 5.84297 6.12022 6.25970 6.31669 6.36726 6.40795 6.46918 6.65810 6.83822 7.03145 7.30388 7.40823 7.67900 8.09311 8.35007 8.72978 8.81342 9.35986 10.87704 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.030821 B = 0.004263 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.262357 B = 6566.245758 C = 7316.273307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.035 3.965 3 N -0.261 5.261 4 N -0.063 5.063 5 N -0.395 5.395 6 H 0.445 0.555 7 C 0.070 3.930 8 C 0.202 3.798 9 N -0.234 5.234 10 N -0.312 5.312 11 C 0.406 3.594 12 N -0.441 5.441 13 C 0.029 3.971 14 C 0.200 3.800 15 H 0.024 0.976 16 C -0.158 4.158 17 C -0.524 4.524 18 H 0.085 0.915 19 C 0.080 3.920 20 N -0.892 5.892 21 Si 0.882 3.118 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.261 1.261 25 N -0.492 5.492 26 C 0.068 3.932 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.035 0.965 31 H 0.110 0.890 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.268 0.732 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.186 16.162 0.904 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 N -0.128 5.128 4 N -0.043 5.043 5 N -0.120 5.120 6 H 0.292 0.708 7 C -0.063 4.063 8 C -0.063 4.063 9 N -0.077 5.077 10 N -0.159 5.159 11 C 0.051 3.949 12 N -0.164 5.164 13 C -0.118 4.118 14 C 0.095 3.905 15 H 0.042 0.958 16 C -0.216 4.216 17 C -0.561 4.561 18 H 0.103 0.897 19 C -0.124 4.124 20 N -0.529 5.529 21 Si 0.712 3.288 22 H -0.202 1.202 23 H -0.223 1.223 24 H -0.185 1.185 25 N -0.190 5.190 26 C -0.076 4.076 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.614 17.190 0.597 18.093 hybrid contribution 0.428 -1.338 0.397 1.460 sum 6.041 15.852 0.994 16.993 Atomic orbital electron populations 1.20238 0.84657 1.04252 1.03794 1.22160 0.98562 0.86461 1.03345 1.74929 0.95178 1.25923 1.16800 1.78190 1.16054 0.91494 1.18530 1.45430 1.08288 1.07107 1.51214 0.70787 1.18673 0.84847 0.90323 1.12506 1.20760 0.87990 0.85024 1.12563 1.74346 1.15269 1.03518 1.14527 1.74910 1.15318 1.01622 1.24053 1.23276 0.86139 0.88156 0.97311 1.58779 1.17904 0.95018 1.44662 1.22562 0.93090 1.05011 0.91090 1.19835 0.84550 0.90778 0.95373 0.95822 1.22353 0.98756 1.01047 0.99465 1.20827 0.96183 0.86655 1.52475 0.89713 1.24811 0.98885 0.94748 0.93931 1.69848 1.35042 0.98672 1.49332 0.86910 0.85433 0.77931 0.78518 1.20179 1.22301 1.18544 1.46060 1.08427 1.05730 1.58824 1.22238 0.76377 1.05653 1.03285 0.90009 0.90483 0.88803 0.94634 0.87205 0.92768 0.92937 0.93513 0.91730 0.92244 0.89874 0.86948 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.03 36.00 0.36 -0.41 16 2 C 0.04 0.45 7.30 -82.35 -0.60 -0.15 16 3 N -0.26 -3.52 12.36 33.53 0.41 -3.10 16 4 N -0.06 -0.77 13.35 60.35 0.81 0.04 16 5 N -0.39 -3.94 6.76 33.31 0.23 -3.72 16 6 H 0.44 2.79 6.44 -190.33 -1.23 1.56 16 7 C 0.07 0.87 7.12 -82.37 -0.59 0.29 16 8 C 0.20 2.92 7.89 -153.77 -1.21 1.71 16 9 N -0.23 -4.06 10.64 32.53 0.35 -3.71 16 10 N -0.31 -6.11 8.97 30.32 0.27 -5.84 16 11 C 0.41 7.20 6.75 -318.85 -2.15 5.05 16 12 N -0.44 -8.34 4.64 -176.07 -0.82 -9.15 16 13 C 0.03 0.46 9.03 60.07 0.54 1.00 16 14 C 0.20 4.54 1.32 -68.86 -0.09 4.45 16 15 H 0.02 0.58 7.17 -51.93 -0.37 0.21 16 16 C -0.16 -3.56 8.47 37.16 0.31 -3.24 16 17 C -0.52 -13.52 8.46 -34.44 -0.29 -13.81 16 18 H 0.08 2.30 6.65 -52.49 -0.35 1.95 16 19 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 20 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 21 Si 0.88 21.31 24.37 -169.99 -4.14 17.17 16 22 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 23 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 25 N -0.49 -6.70 3.23 -122.15 -0.39 -7.10 16 26 C 0.07 0.55 8.62 59.85 0.52 1.07 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.11 6.90 -51.93 -0.36 0.76 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.11 1.91 6.10 -51.93 -0.32 1.59 16 32 H 0.05 0.63 5.38 -51.93 -0.28 0.35 16 33 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 34 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 35 H 0.06 1.40 5.42 -51.93 -0.28 1.12 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 38 H 0.11 0.93 7.15 -51.93 -0.37 0.56 16 39 H 0.07 0.41 6.31 -51.93 -0.33 0.08 16 LS Contribution 308.94 15.07 4.66 4.66 Total: -1.00 -32.21 308.94 -6.50 -38.71 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.34 Total: -1.06 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -3.30 Total: -1.97 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 1.62 Total: -57.50 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.14 Total: 17.17 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.21 -6.50 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121372796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.898 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 215.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 209.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds